Rh6AG069500

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
10036772 .. 10038617
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG069500.1

Sequence Viewer

Length: 1755 bp
ATGAATCATGTCAAAGTGTCACCAAAATTGACTCCAGTTACTGCAAGTTTTCCTTTTCAAGACCTTTTCATATTGGAAAAGCCTGGTCCAGAAAACAACGATGCCAGCGATACAGATGATTACAATGATGAGTATTGTGGTGATGATGATGTGCCTGAGGAGGAAAACGACGCAATGGATGAGGACTTTCCAGTGAAACAAGGGGAAGACGGGGATCCTGAGGATGACCCTGAAGCTAATGGTGATGGAGGAGGTGATGATGGGGATGGGGATGGCAACAACGATGATGATGATAATGAGGATACAAAGAATGAAGAAGAGGAAGAAGCAGAGAATGAAGACGAGGAAGAAGCAGAGAATGAACAAGAGGAAGAAGCAGAAAACCGGCTCAGAACCCTTGATCTACTCTTATCCAGGGTCTCCTGTTTGCATGAAGAGATGGGAGAGTCACTTACGGATTATCAGAAATTAATGATTCTCGAGTTTTTCACACAAGCCAAGGACTTCATCTCCAACTTTGTCACTGGTCATAGGGATGAAGATATACTCAGGCTTATTCATGGTGGAGTCCATTTTGTAGTGAACCATGACCCTATATGCCTCGTGTATTTTAATGGTATATATGACCAGATGGTTGAGCTGAAACAACTGATTGATCACACATATTCAGCTGTGATGAGGACATCCAAGAGTAGATGGTCTGAACTGCCAACTGACATTGGTGAGTCGATATTGAAAAAGTTTGTACCGCCCGTCTTCGACGACATCCTTATTTTCAAACACATTCTTAGCTTTAGAGCTGTTTACCACACATGGAGAACTGCTGCAAAAGCGTTTTGTTCGTACACTCGGTTTCCTCAAACTCCATGGCTCTTGGTTCATACTCGTTGCAAATCGTCCATTGTTGATCCAGAACAGAAAAAGGTTTACGAGATTCAAAATGTATATGGCAATCATCATCATGATTTTTCTGATGTAAGGTGTAAGGGATCATCACATGGTTGGATGGTTGTCTTTCACATGAACTGGGATGTGAGAGAATCTTTAGCATATGTTGTTAATCCGATTACTAGAGCTAGGACTGAAATCCCAGGTAAGGCCGCTCTTTCTGACTCTGAATGGCATTCAGTTGAAATTACTAAAGTTGTTTTGTCCTCCAATCCATCTAGCAATAACTTTTCTGTCATAGTGGCATATTATACACAAACAAGATTTGTTACTGGAGCACTTGCATTCTGCAAGTATGGAGACACATCTTGGAGTAAGCTGGACTATCCACACAAGTATATCTTTCATGACATACTGTTTCACCATGATCACTTATTCGCATTGACCAAGAAACAGTCACTATATGTGTGGGATTTCACAGAATCCTACCCGAAAATGATCTTTAATATTGCTGACACCACTCCTCTGAGATCAGTTGGTCGTAGCTATTTGGTGGAGTCAATGGGTGAAGTTCTACGTGTGGTCAGAGGTGGTGAGAATACAAACAGTGCACACTTTCTGGTGGAAAAGCTGAATGTGAAGGATAAGAAGTGGGAGAAAGTGCAAAATTTGGGTGACCAGAGTTTATTTTTGTTTCATGATCAGTCAATGTCTTTGCCCAAGACATGTTTCTTAGGATCTGAAGACAATTCAATCTACTTTCTACAAGGTGGATGGCTTGCTAGAGGTGTGATTAACAGATACAATCTTGAAACCACTGAGGTACGTAGGATAAACTCATTGTCTGACCTAATTGGCAAAGAGTAA

Protein Analysis

584

Amino Acids

66.98

Weight (kDa)

4.73

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 305 - 552 5.6e-50 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1103
AciI CCGC 2 cut(s) 749, 1101
AclWI GGATC 5 cut(s) 209, 222, 902, 997, 1633
AcsI RAATTY 1 cut(s) 1555
AcuI CTGAAG 2 cut(s) 252, 1650
AfaI GTAC 3 cut(s) 747, 845, 1713
AfiI CCNNNNNNNGG 1 cut(s) 1096
AflIII ACRYGT 2 cut(s) 1465, 1613
AgsI TTSAA 7 cut(s) 59, 736, 778, 938, 1133, 1641, 1700
AjnI CCWGG 3 cut(s) 82, 413, 1090
AjuI GAANNNNNNNTTGG 2 cut(s) 1601, 1633
AluBI AGCT 9 cut(s) 236, 640, 671, 792, 800, 1076, 1267, 1434, 1519
AluI AGCT 9 cut(s) 236, 640, 671, 792, 800, 1076, 1267, 1434, 1519
Alw21I GWGCWC 2 cut(s) 1228, 1501
Alw26I GTCTC 2 cut(s) 424, 1242
Alw44I GTGCAC 1 cut(s) 1497
AlwI GGATC 5 cut(s) 209, 222, 902, 997, 1633
AlwNI CAGNNNCTG 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 479
AoxI GGCC 1 cut(s) 1098
ApaLI GTGCAC 1 cut(s) 1497
ApeKI GCWGC 1 cut(s) 824
ApoI RAATTY 1 cut(s) 1555
AseI ATTAAT 1 cut(s) 470
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 9 cut(s) 12, 152, 254, 266, 734, 1301, 1466, 1493, 1574
AvaI CYCGRG 1 cut(s) 479
AvaII GGWCC 1 cut(s) 86
AxyI CCTNAGG 2 cut(s) 156, 219
BaeGI GKGCMC 1 cut(s) 1501
BamHI GGATCC 1 cut(s) 214
BauI CACGAG 1 cut(s) 602
BbsI GAAGAC 4 cut(s) 213, 345, 748, 1638
Bbv12I GWGCWC 2 cut(s) 1228, 1501
BbvI GCAGC 1 cut(s) 811
BciT130I CCWGG 3 cut(s) 84, 415, 1092
BciVI GTATCC 1 cut(s) 295
BclI TGATCA 3 cut(s) 655, 1315, 1588
BcoDI GTCTC 2 cut(s) 424, 1242
BfaI CTAG 4 cut(s) 1071, 1077, 1167, 1671
BfuI GTATCC 1 cut(s) 295
BisI GCNGC 2 cut(s) 825, 1101
BlsI GCNGC 2 cut(s) 826, 1102
Bme1390I CCNGG 3 cut(s) 84, 415, 1092
Bme18I GGWCC 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 3 cut(s) 84, 415, 1092
BmrI ACTGGG 1 cut(s) 1036
BmsI GCATC 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 1036
BpiI GAAGAC 4 cut(s) 213, 345, 748, 1638
BpmI CTGGAG 2 cut(s) 18, 1242
BsaAI YACGTR 2 cut(s) 1466, 1715
BsaI GGTCTC 1 cut(s) 424
BsaJI CCNNGG 4 cut(s) 414, 498, 866, 1090
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bsc4I CCNNNNNNNGG 1 cut(s) 1096
Bse118I RCCGGY 1 cut(s) 384
Bse1I ACTGG 5 cut(s) 35, 191, 529, 1031, 1225
Bse21I CCTNAGG 2 cut(s) 156, 219
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 3 cut(s) 84, 415, 1092
BseDI CCNNGG 4 cut(s) 414, 498, 866, 1090
BseLI CCNNNNNNNGG 1 cut(s) 1096
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 6 cut(s) 147, 210, 403, 562, 1406, 1698
BseNI ACTGG 5 cut(s) 35, 191, 529, 1031, 1225
BseRI GAGGAG 3 cut(s) 173, 264, 1401
BseSI GKGCMC 1 cut(s) 1501
BseXI GCAGC 1 cut(s) 811
BshFI GGCC 1 cut(s) 1100
BsiHKAI GWGCWC 2 cut(s) 1228, 1501
BsiHKCI CYCGRG 1 cut(s) 479
BsiSI CCGG 1 cut(s) 385
BslI CCNNNNNNNGG 1 cut(s) 1096
BsmAI GTCTC 2 cut(s) 424, 1242
BsmI GAATGC 2 cut(s) 1123, 1232
BsnI GGCC 1 cut(s) 1100
Bso31I GGTCTC 1 cut(s) 424
BsoBI CYCGRG 1 cut(s) 479
Bsp1286I GDGCHC 2 cut(s) 1228, 1501
Bsp19I CCATGG 1 cut(s) 866
BspACI CCGC 2 cut(s) 749, 1101
BspANI GGCC 1 cut(s) 1100
BspCNI CTCAG 6 cut(s) 148, 211, 402, 561, 1407, 1699
BspHI TCATGA 3 cut(s) 961, 1294, 1585
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 5 cut(s) 209, 222, 902, 997, 1633
BspTNI GGTCTC 1 cut(s) 424
BsrBI CCGCTC 1 cut(s) 1103
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 384
BsrI ACTGG 5 cut(s) 35, 191, 529, 1031, 1225
BssAI RCCGGY 1 cut(s) 384
BssECI CCNNGG 4 cut(s) 414, 498, 866, 1090
BssSI CACGAG 1 cut(s) 602
BssT1I CCWWGG 2 cut(s) 498, 866
Bst2BI CACGAG 1 cut(s) 602
Bst2UI CCWGG 3 cut(s) 84, 415, 1092
Bst4CI ACNGT 3 cut(s) 1305, 1344, 1496
Bst6I CTCTTC 2 cut(s) 312, 429
BstBAI YACGTR 2 cut(s) 1466, 1715
BstC8I GCNNGC 2 cut(s) 106, 1668
BstDEI CTNAG 8 cut(s) 156, 219, 389, 548, 788, 1415, 1621, 1707
BstDSI CCRYGG 1 cut(s) 866
BstEII GGTNACC 1 cut(s) 1562
BstMAI GTCTC 2 cut(s) 424, 1242
BstMWI GCNNNNNNNGC 1 cut(s) 830
BstNI CCWGG 3 cut(s) 84, 415, 1092
BstNSI RCATGY 1 cut(s) 1617
BstPI GGTNACC 1 cut(s) 1562
BstSCI CCNGG 3 cut(s) 82, 413, 1090
BstSLI GKGCMC 1 cut(s) 1501
BstSNI TACGTA 1 cut(s) 1715
BstV1I GCAGC 1 cut(s) 811
BstV2I GAAGAC 4 cut(s) 213, 345, 748, 1638
BstX2I RGATCY 2 cut(s) 214, 1625
BstYI RGATCY 2 cut(s) 214, 1625
Bsu36I CCTNAGG 2 cut(s) 156, 219
BsuI GTATCC 1 cut(s) 295
BsuRI GGCC 1 cut(s) 1100
BtgI CCRYGG 1 cut(s) 866
BtsIMutI CAGTG 4 cut(s) 198, 522, 1501, 1704
Cac8I GCNNGC 2 cut(s) 106, 1668
CaiI CAGNNNCTG 1 cut(s) 41
CciI TCATGA 3 cut(s) 961, 1294, 1585
Cfr10I RCCGGY 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 86
CseI GACGC 1 cut(s) 179
Csp6I GTAC 3 cut(s) 746, 844, 1712
CviQI GTAC 3 cut(s) 746, 844, 1712
DdeI CTNAG 8 cut(s) 156, 219, 389, 548, 788, 1415, 1621, 1707
Eam1104I CTCTTC 2 cut(s) 312, 429
EarI CTCTTC 2 cut(s) 312, 429
Eco105I TACGTA 1 cut(s) 1715
Eco130I CCWWGG 2 cut(s) 498, 866
Eco31I GGTCTC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 2 cut(s) 252, 1650
Eco81I CCTNAGG 2 cut(s) 156, 219
Eco88I CYCGRG 1 cut(s) 479
Eco91I GGTNACC 1 cut(s) 1562
EcoO65I GGTNACC 1 cut(s) 1562
EcoRII CCWGG 3 cut(s) 82, 413, 1090
EcoT14I CCWWGG 2 cut(s) 498, 866
ErhI CCWWGG 2 cut(s) 498, 866
FalI AAGNNNNNCTT 4 cut(s) 37, 69, 1274, 1306
FauNDI CATATG 1 cut(s) 1051
FbaI TGATCA 3 cut(s) 655, 1315, 1588
Fnu4HI GCNGC 2 cut(s) 825, 1101
Fsp4HI GCNGC 2 cut(s) 825, 1101
FspBI CTAG 4 cut(s) 1071, 1077, 1167, 1671
GluI GCNGC 2 cut(s) 825, 1101
GsuI CTGGAG 2 cut(s) 18, 1242
HaeIII GGCC 1 cut(s) 1100
HapII CCGG 1 cut(s) 385
HgaI GACGC 1 cut(s) 179
HpaII CCGG 1 cut(s) 385
HphI GGTGA 9 cut(s) 12, 152, 254, 266, 734, 1301, 1466, 1493, 1574
Hpy166II GTNNAC 5 cut(s) 583, 805, 846, 928, 1499
Hpy188III TCNNGA 9 cut(s) 59, 89, 218, 479, 911, 962, 1295, 1586, 1697
Hpy8I GTNNAC 5 cut(s) 583, 805, 846, 928, 1499
Hpy99I CGWCG 2 cut(s) 173, 764
HpyAV CCTTC 1 cut(s) 1522
HpyCH4III ACNGT 3 cut(s) 1305, 1344, 1496
HpyCH4IV ACGT 2 cut(s) 1465, 1714
HpyCH4V TGCA 8 cut(s) 44, 430, 827, 891, 1232, 1239, 1499, 1552
HpyF10VI GCNNNNNNNGC 1 cut(s) 830
HpyF3I CTNAG 8 cut(s) 156, 219, 389, 548, 788, 1415, 1621, 1707
HpySE526I ACGT 2 cut(s) 1465, 1714
Ksp22I TGATCA 3 cut(s) 655, 1315, 1588
LmnI GCTCC 1 cut(s) 1223
Lsp1109I GCAGC 1 cut(s) 811
LweI GCATC 1 cut(s) 91
MaeI CTAG 4 cut(s) 1071, 1077, 1167, 1671
MaeII ACGT 2 cut(s) 1465, 1714
MaeIII GTNAC 7 cut(s) 18, 37, 447, 520, 1216, 1344, 1562
MbiI CCGCTC 1 cut(s) 1103
MflI RGATCY 2 cut(s) 214, 1625
MhlI GDGCHC 2 cut(s) 1228, 1501
MluCI AATT 6 cut(s) 26, 467, 1134, 1555, 1636, 1740
MlyI GAGTC 6 cut(s) 25, 455, 576, 734, 1106, 1454
MmeI TCCRAC 2 cut(s) 537, 983
MseI TTAA 5 cut(s) 470, 612, 1059, 1392, 1683
MslI CAYNNNNRTG 2 cut(s) 534, 960
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 1 cut(s) 385
MspR9I CCNGG 3 cut(s) 84, 415, 1092
Mva1269I GAATGC 2 cut(s) 1123, 1232
MvaI CCWGG 3 cut(s) 84, 415, 1092
MwoI GCNNNNNNNGC 1 cut(s) 830
NcoI CCATGG 1 cut(s) 866
NdeI CATATG 1 cut(s) 1051
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 5 cut(s) 18, 447, 520, 1344, 1562
NspI RCATGY 1 cut(s) 1617
PaeR7I CTCGAG 1 cut(s) 479
PagI TCATGA 3 cut(s) 961, 1294, 1585
PciI ACATGT 1 cut(s) 1613
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 2 cut(s) 1123, 1232
PfeI GAWTC 5 cut(s) 4, 475, 934, 1040, 1370
PkrI GCNGC 2 cut(s) 826, 1102
PleI GAGTC 6 cut(s) 25, 454, 575, 733, 1106, 1453
PpsI GAGTC 6 cut(s) 25, 454, 575, 733, 1106, 1453
Ppu21I YACGTR 2 cut(s) 1466, 1715
PscI ACATGT 1 cut(s) 1613
PshBI ATTAAT 1 cut(s) 470
Psp6I CCWGG 3 cut(s) 82, 413, 1090
PspEI GGTNACC 1 cut(s) 1562
PspGI CCWGG 3 cut(s) 82, 413, 1090
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 86
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 2 cut(s) 214, 1625
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 3 cut(s) 747, 845, 1713
RsaNI GTAC 3 cut(s) 746, 844, 1712
RseI CAYNNNNRTG 2 cut(s) 534, 960
SaqAI TTAA 5 cut(s) 470, 612, 1059, 1392, 1683
SatI GCNGC 2 cut(s) 825, 1101
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 6 cut(s) 25, 455, 576, 734, 1106, 1454
ScrFI CCNGG 3 cut(s) 84, 415, 1092
SduI GDGCHC 2 cut(s) 1228, 1501
SfaNI GCATC 1 cut(s) 91
Sfr274I CTCGAG 1 cut(s) 479
SinI GGWCC 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 479
SmiMI CAYNNNNRTG 2 cut(s) 534, 960
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
SnaBI TACGTA 1 cut(s) 1715
Sse9I AATT 6 cut(s) 26, 467, 1134, 1555, 1636, 1740
SsiI CCGC 2 cut(s) 749, 1101
SspI AATATT 1 cut(s) 1396
SspMI CTAG 4 cut(s) 1071, 1077, 1167, 1671
StyD4I CCNGG 3 cut(s) 82, 413, 1090
StyI CCWWGG 2 cut(s) 498, 866
TaaI ACNGT 3 cut(s) 1305, 1344, 1496
TaiI ACGT 2 cut(s) 1468, 1717
TaqI TCGA 3 cut(s) 480, 728, 759
TasI AATT 6 cut(s) 26, 467, 1134, 1555, 1636, 1740
TauI GCSGC 1 cut(s) 1103
TfiI GAWTC 5 cut(s) 4, 475, 934, 1040, 1370
Tru1I TTAA 5 cut(s) 470, 612, 1059, 1392, 1683
Tru9I TTAA 5 cut(s) 470, 612, 1059, 1392, 1683
TscAI CASTG 4 cut(s) 198, 529, 1501, 1711
TseFI GTSAC 5 cut(s) 18, 447, 520, 1344, 1562
TseI GCWGC 1 cut(s) 824
Tsp45I GTSAC 5 cut(s) 18, 447, 520, 1344, 1562
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 4 cut(s) 198, 529, 1501, 1711
VneI GTGCAC 1 cut(s) 1497
VpaK11BI GGWCC 1 cut(s) 86
VspI ATTAAT 1 cut(s) 470
XapI RAATTY 1 cut(s) 1555
XceI RCATGY 1 cut(s) 1617
XhoI CTCGAG 1 cut(s) 479
XspI CTAG 4 cut(s) 1071, 1077, 1167, 1671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.