FvH4_1g02041

f-box protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
1078394 .. 1080386
1993 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02041.t1

Sequence Viewer

Length: 1665 bp
ATGGATTTGCAGGCGGATCATAAAACAAAGATGACAGATGAAAGGGAGAAAGTAAACAAGAGACCAAGAACGGCCACAGACCATAAAAGAAAGAGGGTAGACGAAGGGAAGAAAGAAAAGAAGAGACCACGAACGGCGGCCGTCGACGAGGCGTTTCAGTTTCAGTCAAAAGATGTTGCCTCCGGCGGTCATCCTCGAAAAGAGAAAAGAAGAAGGCCTGACGTGGGGAACAGGGAAAGTTCGAGGAAAAGGAAAGTCGACCTTATCAAAGACGATAATATGTTTGATAGGTCAACTGAAGCTAGCGTCGACGACGGAGCTCGTAAGATTCACGCCATGCAGCGCCTCATGTCCGCTGTAGATGGTCTCATGTCCGTTGTAGATGGTGAAAGTAACCCTGAAGATCTGATAAGTTTGACCGATGAGATTGAGTACTTTAACAAGATTCAGAACAAGATTGTTGAGCTGAAACAGAAGGTGGTTGAACTGAAACAAAAGAGTCTCAAAAAGAGAGAAGCAAATTGGTCTGAGCTTCCTAATGAGCTTCTAGAGTCGATCTTGAAAAAGCTTATACCTTCTGAATTTGACATCATTGGATTCAGACGTATCCGAGAGTTTAAAGCCGTTTGTCAATCCTGGAGAGCCGCTGCAAAATCTTGTAGCTCGTACGTTCCTTTACCTCGGAGTCCATGTCTCTTGCTTCACGGAGAAACACAAAATTCCTTCCTGTTTGATCCCATTGGAAAGAAGAAGCACGAAATCAGGAACGTCCATGACTACACTCCTCGTGCCAGATGTGTTGGTTCATCATATGGGTGGATTGTCATGTTTTACGAAGACAATGAGTTGAAAGAATCGAAATCGAAAGCACATCTCTTTAACCCGATTACAAGAGGCCGCATTTCAATCCCAGGCGCTCAGAACCTTCCTAGCTATTGTCGCACACCTCGTAAAGCTATTATTTCATCCAATCCCTCTTTCAACAAGAACTTTGTTGTGGTAGTGCAATTCGGAGTAAGACTAGCATACTATAAACATGGAGACGAAGACATGTCCTGGAAGATGTTGAAAGTTGATGTTGATGGTGCGGATTATAATGATGAGGATTATTATGGTGATAAGGGTTTTGTGTTTCATGATAACCTTTTAGTGGCATTGGCAAATAAATTTACCAATGTTTGGGACTTCAAGAAATACCCTCCTTTACACCGTAGCTCTACGAAGAATTCATCTACTGCAAAGTTTTTTACCTATTTGATGGAGTCATCATTGACGGGTGACATCTTAGGTCTAACAAAAGAGGGGGAAAACAACAAGACTTTAAAGTTTGGTGTGGAAAAGCTAGATTTACAAAAGGGAAAATGGGAGAACCTACAAAGTTTAGGCGACCAAAGTCTATTCTTTTTTTCTTTTTTTGGCGGACGGAGACAATGGCAACTAATGTCGATGGTGAACCCATGTTTCTTAGGATGTGAAAAGAACTCCATCTACTTCGCAATGACAGAATTGGTTGAATCTGCAGCATTGGATAAATATGCAATATACGACCTTGAAAAAGGAAAAATAAAAAGCCTGGGTGAAGAAGGTATGATAAAGTCATTTTGTGAAGATGTACACATTAATTTTGGTAATGAACCCTTATGGATTATTCCTAATCCATGGTGA

Protein Analysis

555

Amino Acids

63.79

Weight (kDa)

9.11

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 255 - 508 2.8e-32 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1095
AccB7I CCANNNNNTGG 1 cut(s) 1179
AccI GTMKAC 4 cut(s) 99, 144, 258, 309
AciI CCGC 8 cut(s) 14, 137, 186, 354, 645, 898, 1088, 1419
AclWI GGATC 2 cut(s) 24, 728
AcoI YGGCCR 2 cut(s) 72, 138
AcsI RAATTY 4 cut(s) 581, 718, 1166, 1225
AcuI CTGAAG 2 cut(s) 318, 420
AfaI GTAC 3 cut(s) 434, 668, 1614
AfiI CCNNNNNNNGG 3 cut(s) 224, 1150, 1179
AflIII ACRYGT 1 cut(s) 1050
AgsI TTSAA 9 cut(s) 485, 562, 850, 906, 982, 1069, 1189, 1514, 1553
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 4 cut(s) 635, 910, 1055, 1572
AjuI GAANNNNNNNTTGG 2 cut(s) 962, 994
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 7 cut(s) 55, 118, 371, 506, 698, 1035, 1420
AlwI GGATC 2 cut(s) 24, 728
AoxI GGCC 4 cut(s) 72, 138, 215, 895
ApeKI GCWGC 3 cut(s) 340, 647, 1520
ApoI RAATTY 4 cut(s) 581, 718, 1166, 1225
AseI ATTAAT 1 cut(s) 1620
AspLEI GCGC 2 cut(s) 345, 917
AsuHPI GGTGA 5 cut(s) 398, 1127, 1289, 1462, 1589
AsuNHI GCTAGC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 322
BauI CACGAG 1 cut(s) 786
BbsI GAAGAC 2 cut(s) 843, 1053
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 3 cut(s) 352, 634, 1532
BccI CCATC 6 cut(s) 356, 377, 1076, 1252, 1441, 1493
BceAI ACGGC 4 cut(s) 87, 125, 150, 608
BciT130I CCWGG 4 cut(s) 637, 912, 1057, 1574
BciVI GTATCC 1 cut(s) 617
BcoDI GTCTC 7 cut(s) 55, 118, 371, 506, 698, 1035, 1420
BfaI CTAG 5 cut(s) 303, 548, 930, 1022, 1343
BfmI CTRYAG 2 cut(s) 357, 1518
BfoI RGCGCY 2 cut(s) 346, 918
BfuI GTATCC 1 cut(s) 617
BglII AGATCT 1 cut(s) 403
BisI GCNGC 6 cut(s) 138, 341, 645, 648, 898, 1521
BlsI GCNGC 6 cut(s) 139, 342, 646, 649, 899, 1522
BmcAI AGTACT 1 cut(s) 434
Bme1390I CCNGG 4 cut(s) 637, 912, 1057, 1574
BmgBI CACGTC 1 cut(s) 223
BmrFI CCNGG 4 cut(s) 637, 912, 1057, 1574
BmtI GCTAGC 1 cut(s) 306
BoxI GACNNNNGTC 1 cut(s) 1392
BpiI GAAGAC 2 cut(s) 843, 1053
BpmI CTGGAG 1 cut(s) 658
BsaI GGTCTC 3 cut(s) 55, 118, 371
BsaJI CCNNGG 4 cut(s) 680, 910, 1573, 1658
BsaXI ACNNNNNCTCC 2 cut(s) 676, 706
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 1150, 1179
Bse3DI GCAATG 1 cut(s) 1503
BseBI CCWGG 4 cut(s) 637, 912, 1057, 1574
BseDI CCNNGG 4 cut(s) 680, 910, 1573, 1658
BseGI GGATG 3 cut(s) 190, 965, 1475
BseLI CCNNNNNNNGG 3 cut(s) 224, 1150, 1179
BseMI GCAATG 1 cut(s) 1503
BseMII CTCAG 2 cut(s) 519, 932
BseRI GAGGAG 1 cut(s) 774
BseX3I CGGCCG 1 cut(s) 138
BseXI GCAGC 3 cut(s) 352, 634, 1532
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 4 cut(s) 74, 140, 217, 897
BsiEI CGRYCG 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 322
BsiSI CCGG 1 cut(s) 183
BsiWI CGTACG 1 cut(s) 666
BslFI GGGAC 1 cut(s) 1196
BslI CCNNNNNNNGG 3 cut(s) 224, 1150, 1179
BsmAI GTCTC 7 cut(s) 55, 118, 371, 506, 698, 1035, 1420
BsmBI CGTCTC 1 cut(s) 1035
BsmFI GGGAC 1 cut(s) 1196
BsnI GGCC 4 cut(s) 74, 140, 217, 897
Bso31I GGTCTC 3 cut(s) 55, 118, 371
Bsp1286I GDGCHC 1 cut(s) 322
Bsp1407I TGTACA 1 cut(s) 1612
Bsp143I GATC 4 cut(s) 16, 403, 555, 733
Bsp19I CCATGG 1 cut(s) 1658
BspACI CCGC 8 cut(s) 14, 137, 186, 354, 645, 898, 1088, 1419
BspANI GGCC 4 cut(s) 74, 140, 217, 897
BspCNI CTCAG 2 cut(s) 520, 931
BspHI TCATGA 1 cut(s) 1135
BspMAI CTGCAG 1 cut(s) 1522
BspOI GCTAGC 1 cut(s) 306
BspPI GGATC 2 cut(s) 24, 728
BspTNI GGTCTC 3 cut(s) 55, 118, 371
BsrDI GCAATG 1 cut(s) 1503
BsrGI TGTACA 1 cut(s) 1612
BssECI CCNNGG 4 cut(s) 680, 910, 1573, 1658
BssMI GATC 4 cut(s) 16, 403, 555, 733
BssSI CACGAG 1 cut(s) 786
BssT1I CCWWGG 1 cut(s) 1658
Bst2BI CACGAG 1 cut(s) 786
Bst2UI CCWGG 4 cut(s) 637, 912, 1057, 1574
Bst4CI ACNGT 1 cut(s) 1211
Bst6I CTCTTC 1 cut(s) 116
BstAUI TGTACA 1 cut(s) 1612
BstC8I GCNNGC 2 cut(s) 12, 304
BstDEI CTNAG 4 cut(s) 528, 918, 1285, 1465
BstDSI CCRYGG 1 cut(s) 1658
BstF5I GGATG 3 cut(s) 190, 965, 1475
BstH2I RGCGCY 2 cut(s) 346, 918
BstHHI GCGC 2 cut(s) 345, 917
BstKTI GATC 4 cut(s) 19, 406, 558, 736
BstMAI GTCTC 7 cut(s) 55, 118, 371, 506, 698, 1035, 1420
BstMBI GATC 4 cut(s) 16, 403, 555, 733
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 939
BstNI CCWGG 4 cut(s) 637, 912, 1057, 1574
BstNSI RCATGY 1 cut(s) 1054
BstPAI GACNNNNGTC 1 cut(s) 1392
BstSCI CCNGG 4 cut(s) 635, 910, 1055, 1572
BstSFI CTRYAG 2 cut(s) 357, 1518
BstV1I GCAGC 3 cut(s) 352, 634, 1532
BstV2I GAAGAC 2 cut(s) 843, 1053
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BstZI CGGCCG 1 cut(s) 138
BsuI GTATCC 1 cut(s) 617
BsuRI GGCC 4 cut(s) 74, 140, 217, 897
BtgI CCRYGG 1 cut(s) 1658
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 3 cut(s) 190, 965, 1475
Cac8I GCNNGC 2 cut(s) 12, 304
CciI TCATGA 1 cut(s) 1135
CfoI GCGC 2 cut(s) 345, 917
CseI GACGC 1 cut(s) 295
Csp6I GTAC 3 cut(s) 433, 667, 1613
CviQI GTAC 3 cut(s) 433, 667, 1613
DdeI CTNAG 4 cut(s) 528, 918, 1285, 1465
DpnI GATC 4 cut(s) 18, 405, 557, 735
DpnII GATC 4 cut(s) 16, 403, 555, 733
DraI TTTAAA 2 cut(s) 619, 1323
EaeI YGGCCR 2 cut(s) 72, 138
EagI CGGCCG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 2 cut(s) 29, 1434
Ecl136II GAGCTC 1 cut(s) 320
EclXI CGGCCG 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 1658
Eco147I AGGCCT 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 322
Eco31I GGTCTC 3 cut(s) 55, 118, 371
Eco52I CGGCCG 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 320
Eco57I CTGAAG 2 cut(s) 318, 420
EcoICRI GAGCTC 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 1225
EcoRII CCWGG 4 cut(s) 635, 910, 1055, 1572
EcoT14I CCWWGG 1 cut(s) 1658
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 1658
Esp3I CGTCTC 1 cut(s) 1035
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 1196
FauNDI CATATG 1 cut(s) 811
FblI GTMKAC 4 cut(s) 99, 144, 258, 309
Fnu4HI GCNGC 6 cut(s) 138, 341, 645, 648, 898, 1521
FokI GGATG 3 cut(s) 177, 952, 1482
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 6 cut(s) 138, 341, 645, 648, 898, 1521
FspBI CTAG 5 cut(s) 303, 548, 930, 1022, 1343
GlaI GCGC 2 cut(s) 344, 916
GluI GCNGC 6 cut(s) 138, 341, 645, 648, 898, 1521
GsuI CTGGAG 1 cut(s) 658
HaeII RGCGCY 2 cut(s) 346, 918
HaeIII GGCC 4 cut(s) 74, 140, 217, 897
HapII CCGG 1 cut(s) 183
HgaI GACGC 1 cut(s) 295
HhaI GCGC 2 cut(s) 345, 917
Hin6I GCGC 2 cut(s) 343, 915
HinP1I GCGC 2 cut(s) 343, 915
HincII GTYRAC 4 cut(s) 145, 259, 294, 310
HindII GTYRAC 4 cut(s) 145, 259, 294, 310
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 9 cut(s) 328, 445, 499, 551, 597, 685, 854, 1262, 1514
HpaII CCGG 1 cut(s) 183
HphI GGTGA 5 cut(s) 398, 1127, 1289, 1462, 1589
Hpy166II GTNNAC 8 cut(s) 55, 100, 145, 259, 294, 310, 1453, 1615
Hpy188I TCNGA 9 cut(s) 408, 450, 529, 580, 602, 611, 684, 921, 1013
Hpy188III TCNNGA 5 cut(s) 548, 559, 763, 1136, 1189
Hpy8I GTNNAC 8 cut(s) 55, 100, 145, 259, 294, 310, 1453, 1615
Hpy99I CGWCG 5 cut(s) 146, 149, 311, 314, 317
HpyAV CCTTC 7 cut(s) 98, 207, 469, 585, 733, 935, 1577
HpyCH4III ACNGT 1 cut(s) 1211
HpyCH4IV ACGT 4 cut(s) 222, 604, 669, 768
HpyCH4V TGCA 7 cut(s) 10, 340, 650, 1006, 1238, 1520, 1538
HpyF10VI GCNNNNNNNGC 1 cut(s) 939
HpyF3I CTNAG 4 cut(s) 528, 918, 1285, 1465
HpySE526I ACGT 4 cut(s) 222, 604, 669, 768
HspAI GCGC 2 cut(s) 343, 915
Kzo9I GATC 4 cut(s) 16, 403, 555, 733
LmnI GCTCC 1 cut(s) 317
Lsp1109I GCAGC 3 cut(s) 352, 634, 1532
MaeI CTAG 5 cut(s) 303, 548, 930, 1022, 1343
MaeII ACGT 4 cut(s) 222, 604, 669, 768
MaeIII GTNAC 2 cut(s) 392, 1277
MalI GATC 4 cut(s) 18, 405, 557, 735
MboI GATC 4 cut(s) 16, 403, 555, 733
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 8 cut(s) 520, 581, 718, 1007, 1166, 1225, 1505, 1621
MlyI GAGTC 4 cut(s) 508, 560, 694, 1271
MseI TTAA 5 cut(s) 438, 618, 879, 1322, 1620
MslI CAYNNNNRTG 1 cut(s) 814
MspA1I CMGCKG 2 cut(s) 356, 647
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 4 cut(s) 637, 912, 1057, 1574
MvaI CCWGG 4 cut(s) 637, 912, 1057, 1574
MwoI GCNNNNNNNGC 1 cut(s) 939
NcoI CCATGG 1 cut(s) 1658
NdeI CATATG 1 cut(s) 811
NdeII GATC 4 cut(s) 16, 403, 555, 733
NheI GCTAGC 1 cut(s) 302
NmuCI GTSAC 1 cut(s) 1277
NspI RCATGY 1 cut(s) 1054
PagI TCATGA 1 cut(s) 1135
PceI AGGCCT 1 cut(s) 217
PciI ACATGT 1 cut(s) 1050
PcsI WCGNNNNNNNCGW 1 cut(s) 946
PfeI GAWTC 5 cut(s) 328, 445, 597, 854, 1514
Pfl23II CGTACG 1 cut(s) 666
PflMI CCANNNNNTGG 1 cut(s) 1179
PfoI TCCNGGA 2 cut(s) 635, 1055
PkrI GCNGC 6 cut(s) 139, 342, 646, 649, 899, 1522
PleI GAGTC 4 cut(s) 507, 559, 693, 1270
PpsI GAGTC 4 cut(s) 507, 559, 693, 1270
PscI ACATGT 1 cut(s) 1050
PshAI GACNNNNGTC 1 cut(s) 1392
PshBI ATTAAT 1 cut(s) 1620
PsiI TTATAA 1 cut(s) 1095
Psp124BI GAGCTC 1 cut(s) 322
Psp6I CCWGG 4 cut(s) 635, 910, 1055, 1572
PspGI CCWGG 4 cut(s) 635, 910, 1055, 1572
PspLI CGTACG 1 cut(s) 666
PsrI GAACNNNNNNTAC 2 cut(s) 1472, 1504
PstI CTGCAG 1 cut(s) 1522
PsuI RGATCY 1 cut(s) 403
RsaI GTAC 3 cut(s) 434, 668, 1614
RsaNI GTAC 3 cut(s) 433, 667, 1613
RseI CAYNNNNRTG 1 cut(s) 814
SacI GAGCTC 1 cut(s) 322
SalI GTCGAC 3 cut(s) 143, 257, 308
SaqAI TTAA 5 cut(s) 438, 618, 879, 1322, 1620
SatI GCNGC 6 cut(s) 138, 341, 645, 648, 898, 1521
Sau3AI GATC 4 cut(s) 16, 403, 555, 733
ScaI AGTACT 1 cut(s) 434
SchI GAGTC 4 cut(s) 508, 560, 694, 1271
ScrFI CCNGG 4 cut(s) 637, 912, 1057, 1574
SduI GDGCHC 1 cut(s) 322
SfcI CTRYAG 2 cut(s) 357, 1518
SgrDI CGTCGACG 2 cut(s) 143, 308
SmiMI CAYNNNNRTG 1 cut(s) 814
Sse9I AATT 8 cut(s) 520, 581, 718, 1007, 1166, 1225, 1505, 1621
SseBI AGGCCT 1 cut(s) 217
SsiI CCGC 8 cut(s) 14, 137, 186, 354, 645, 898, 1088, 1419
SspMI CTAG 5 cut(s) 303, 548, 930, 1022, 1343
SstI GAGCTC 1 cut(s) 322
StuI AGGCCT 1 cut(s) 217
StyD4I CCNGG 4 cut(s) 635, 910, 1055, 1572
StyI CCWWGG 1 cut(s) 1658
TaaI ACNGT 1 cut(s) 1211
TaiI ACGT 4 cut(s) 225, 607, 672, 771
TaqI TCGA 9 cut(s) 144, 196, 242, 258, 309, 554, 857, 863, 1445
TaqII GACCGA 1 cut(s) 434
TasI AATT 8 cut(s) 520, 581, 718, 1007, 1166, 1225, 1505, 1621
TatI WGTACW 2 cut(s) 432, 1612
TauI GCSGC 3 cut(s) 140, 647, 900
TfiI GAWTC 5 cut(s) 328, 445, 597, 854, 1514
Tru1I TTAA 5 cut(s) 438, 618, 879, 1322, 1620
Tru9I TTAA 5 cut(s) 438, 618, 879, 1322, 1620
TseFI GTSAC 1 cut(s) 1277
TseI GCWGC 3 cut(s) 340, 647, 1520
Tsp45I GTSAC 1 cut(s) 1277
TspDTI ATGAA 6 cut(s) 54, 795, 954, 1124, 1218, 1647
TspGWI ACGGA 4 cut(s) 330, 364, 720, 1438
Van91I CCANNNNNTGG 1 cut(s) 1179
VspI ATTAAT 1 cut(s) 1620
XapI RAATTY 4 cut(s) 581, 718, 1166, 1225
XbaI TCTAGA 1 cut(s) 547
XceI RCATGY 1 cut(s) 1054
XmiI GTMKAC 4 cut(s) 99, 144, 258, 309
XspI CTAG 5 cut(s) 303, 548, 930, 1022, 1343
ZrmI AGTACT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.