Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Forward (+)

1829491 .. 1830174

Gene Structure 684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG027100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGACTGAAGGAAGTACTGACGCCCACCCGATGAAACGAAGAGATAAAAGAACAAGAATGCCTGACGATGACGTGAACAAGGAAAGTAAGAGACAAAGAACCAAAGAGAAAAAGTTTGATCAGGTTCACACAGCCATCAAGCGTCTCATGTTCGCCGTCGACGGTGGTAGTAGGCCTGAAGATCTTGTAAGGTTGACCGGTAGCAATCCTGAGGTGGTGGAGATCAATGAGCCCAAGTGCGTTGAGTATTTGAACAAGATACATGACCAAATTGTTGAGCTAAAACAGAATAGTATCAAAAAGAGAAAAGCAAACTGGTCTGGGCTTCCCACTGAGCTTCTAGAGTCCATCTTGAAAAAGCTTATACCTTCTGAATTTGACATCCTTGGCTTTAGAGATATTCGATATTTTAAAGCCGTCTGTCATTCCTGGAGAACCGCCGCAATATCTTGTAGCTCTTACGTCCCGTTGCCTCGAACTCCGTGTCTCTTGCTTCATGAAAACAACTCCTCCCTTTTTGATCCCATAGGAAAGAAGGTGCACCAAATCAGGAACATCTGTGACTTTTTTCCTCGAGCCACCTGTGTGGGTTCATCATATGGGTGGATTGTCATGTTTTACGAAGATGAAGATTCGAAAGAATCAATGGCACATCTTTTTAACCCGATTTCAATGCAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

227

Amino Acids

26.23

Weight (kDa)

8.83

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	2 cut(s)	438, 441
AclWI	GGATC	1 cut(s)	515
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	2 cut(s)	27, 198
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	16
AgeI	ACCGGT	1 cut(s)	197
AgsI	TTSAA	3 cut(s)	253, 355, 672
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	428
AleI	CACNNNNGTG	1 cut(s)	584
AluBI	AGCT	4 cut(s)	280, 337, 361, 456
AluI	AGCT	4 cut(s)	280, 337, 361, 456
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	3 cut(s)	85, 149, 491
Alw44I	GTGCAC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	515
Ama87I	CYCGRG	1 cut(s)	573
AoxI	GGCC	1 cut(s)	173
ApaLI	GTGCAC	1 cut(s)	539
ApoI	RAATTY	1 cut(s)	374
ArsI	GACNNNNNNTTYG	2 cut(s)	469, 501
AsiGI	ACCGGT	1 cut(s)	197
AsuII	TTCGAA	1 cut(s)	635
AvaI	CYCGRG	1 cut(s)	573
AxyI	CCTNAGG	1 cut(s)	210
BaeGI	GKGCMC	1 cut(s)	543
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	543
BccI	CCATC	2 cut(s)	143, 356
BceAI	ACGGC	2 cut(s)	140, 401
BcgI	CGANNNNNNTGC	1 cut(s)	655
BciT130I	CCWGG	1 cut(s)	430
BclI	TGATCA	1 cut(s)	118
BcoDI	GTCTC	3 cut(s)	85, 149, 491
BfaI	CTAG	1 cut(s)	341
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	430
BmeT110I	CYCGRG	1 cut(s)	573
BmgBI	CACGTC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	430
BpmI	CTGGAG	1 cut(s)	451
Bpu14I	TTCGAA	1 cut(s)	635
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	320
Bse21I	CCTNAGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	430
BseDI	CCNNGG	1 cut(s)	385
BseGI	GGATG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	201, 324
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	499
BseSI	GKGCMC	1 cut(s)	543
BshFI	GGCC	1 cut(s)	175
BshTI	ACCGGT	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	543
BsiHKCI	CYCGRG	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	449
BsmAI	GTCTC	3 cut(s)	85, 149, 491
BsmBI	CGTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	175
BsoBI	CYCGRG	1 cut(s)	573
Bsp119I	TTCGAA	1 cut(s)	635
Bsp1286I	GDGCHC	2 cut(s)	234, 543
Bsp143I	GATC	4 cut(s)	118, 181, 222, 520
BspACI	CCGC	2 cut(s)	438, 441
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	2 cut(s)	202, 325
BspHI	TCATGA	1 cut(s)	496
BspPI	GGATC	1 cut(s)	515
BspT104I	TTCGAA	1 cut(s)	635
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	4 cut(s)	118, 181, 222, 520
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	385
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	21
BstBI	TTCGAA	1 cut(s)	635
BstDEI	CTNAG	2 cut(s)	210, 333
BstF5I	GGATG	1 cut(s)	381
BstKTI	GATC	4 cut(s)	121, 184, 225, 523
BstMAI	GTCTC	3 cut(s)	85, 149, 491
BstMBI	GATC	4 cut(s)	118, 181, 222, 520
BstNI	CCWGG	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	428
BstSLI	GKGCMC	1 cut(s)	543
BstX2I	RGATCY	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	181
Bsu36I	CCTNAGG	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	175
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	330
CciI	TCATGA	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	197
CseI	GACGC	2 cut(s)	29, 131
Csp6I	GTAC	1 cut(s)	15
CspAI	ACCGGT	1 cut(s)	197
CviAII	CATG	4 cut(s)	148, 263, 497, 613
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	2 cut(s)	210, 333
DpnI	GATC	4 cut(s)	120, 183, 224, 522
DpnII	GATC	4 cut(s)	118, 181, 222, 520
DraI	TTTAAA	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	385
Eco147I	AGGCCT	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	234
Eco57I	CTGAAG	2 cut(s)	27, 198
Eco81I	CCTNAGG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	573
EcoRII	CCWGG	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	385
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	4 cut(s)	151, 266, 500, 616
FaiI	YATR	8 cut(s)	149, 264, 365, 498, 527, 598, 600, 614
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	4 cut(s)	147, 262, 496, 612
FauNDI	CATATG	1 cut(s)	598
FbaI	TGATCA	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	451
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	198
HgaI	GACGC	2 cut(s)	29, 131
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	4 cut(s)	151, 266, 500, 616
HincII	GTYRAC	2 cut(s)	160, 195
HindII	GTYRAC	2 cut(s)	160, 195
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	3 cut(s)	344, 632, 641
HpaII	CCGG	1 cut(s)	198
Hpy166II	GTNNAC	5 cut(s)	76, 127, 160, 195, 541
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	5 cut(s)	209, 341, 352, 497, 550
Hpy8I	GTNNAC	5 cut(s)	76, 127, 160, 195, 541
Hpy99I	CGWCG	2 cut(s)	161, 164
HpyAV	CCTTC	2 cut(s)	378, 529
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	2 cut(s)	72, 462
HpyCH4V	TGCA	2 cut(s)	541, 676
HpyF3I	CTNAG	2 cut(s)	210, 333
HpySE526I	ACGT	2 cut(s)	72, 462
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	151, 266, 500, 616
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	118, 181, 222, 520
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	2 cut(s)	72, 462
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	4 cut(s)	120, 183, 224, 522
MboI	GATC	4 cut(s)	118, 181, 222, 520
MboII	GAAGA	4 cut(s)	51, 191, 635, 641
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	234, 543
MluCI	AATT	3 cut(s)	270, 374, 679
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	4 cut(s)	205, 483, 520, 582
MseI	TTAA	3 cut(s)	411, 660, 682
MslI	CAYNNNNRTG	2 cut(s)	584, 601
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	430
Mva1269I	GAATGC	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	430
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	4 cut(s)	118, 181, 222, 520
NlaIII	CATG	4 cut(s)	151, 266, 500, 616
NmuCI	GTSAC	1 cut(s)	560
NspV	TTCGAA	1 cut(s)	635
OliI	CACNNNNGTG	1 cut(s)	584
PaeR7I	CTCGAG	1 cut(s)	573
PagI	TCATGA	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	175
PctI	GAATGC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	632, 641
PfoI	TCCNGGA	1 cut(s)	428
PinAI	ACCGGT	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PspXI	VCTCGAGB	1 cut(s)	573
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
RseI	CAYNNNNRTG	2 cut(s)	584, 601
SalI	GTCGAC	1 cut(s)	158
SaqAI	TTAA	3 cut(s)	411, 660, 682
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	4 cut(s)	118, 181, 222, 520
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	2 cut(s)	234, 543
Sfr274I	CTCGAG	1 cut(s)	573
SfuI	TTCGAA	1 cut(s)	635
SgrDI	CGTCGACG	1 cut(s)	158
SlaI	CTCGAG	1 cut(s)	573
SmiMI	CAYNNNNRTG	2 cut(s)	584, 601
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
Sse9I	AATT	3 cut(s)	270, 374, 679
SseBI	AGGCCT	1 cut(s)	175
SsiI	CCGC	2 cut(s)	438, 441
SspMI	CTAG	1 cut(s)	341
StuI	AGGCCT	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	428
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	2 cut(s)	75, 465
TaqI	TCGA	5 cut(s)	159, 403, 475, 574, 635
TasI	AATT	3 cut(s)	270, 374, 679
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	2 cut(s)	632, 641
Tru1I	TTAA	3 cut(s)	411, 660, 682
Tru9I	TTAA	3 cut(s)	411, 660, 682
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	560
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	5 cut(s)	47, 485, 513, 582, 642
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	337
VneI	GTGCAC	1 cut(s)	539
XapI	RAATTY	1 cut(s)	374
XbaI	TCTAGA	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	573
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	341
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.