RchiOBHm_Chr6g0254471

sphingolipid transporter spinster homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000658
Physical Location & Seq
Reverse (-)
9525928 .. 9531638
5711 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22827

Sequence Viewer

Length: 732 bp
ATGTCAATTGATTTATACTGTCTTTTATCTCAGAAAACTGTGTGGATACCATCTGAATATGCACTTGGTTATGTATATGGTGGGTTGGTGGGAATTCATTCCAATTGGCATTTGCATTCTGGGGGGGAGGCAATCCTGATGCTATCGTTTGCTATTCTTGGATTTGTAATGAAGCCTCTGCATCTTGAAGGTGTTCAAATTTCAAGGTTTACGAAAGATATGAAGATGCTTTTGGTTGATAATGTTTATGTTGTTAATGTTCTAGGTTACATAGCATACGACTTTGTAAGGTGTGCATACTCATATTGGGGGCCTACGACTGGTTATAATATAAATCATATGGTAAGAAATTGCATTGGATTTGCTATTGAGATTTGTATCGTTCAATATAAGGCTTTTCCTTTATCTTCCTTAATTCTTCATATAGTGGTGAATGATGTTAAGTGCTTGGGAAACAGAACCACGATAAACTGGCTCCTTTTAGCAGCTACGTTTTTTGGGGAAATATTTTGCTTCAGTGCCTTTTGCTCCTCAAACGTACATGGTCCTGTAAATTTTATTTGTCTGCACTGTGTTAAACCTAGTATGATCGAGACCTCTAGCTATGGCTATGTCTCTGCTTCTGATTGCATTAACAATTGGAGGGTGCGTGACTGCTCTTATTCTAGCATCCGTATTGTATTCATTCCAGCAGCTGGTATATGGTTCATAGGTAAGTTTTTTTTTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 OATP

Protein Analysis

243

Amino Acids

27.38

Weight (kDa)

7.98

Isoelectric Point (pI)

29.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AccB7I CCANNNNNTGG 1 cut(s) 695
AcsI RAATTY 3 cut(s) 93, 198, 553
AcuI CTGAAG 1 cut(s) 499
AfaI GTAC 1 cut(s) 540
AfiI CCNNNNNNNGG 2 cut(s) 320, 695
AgsI TTSAA 4 cut(s) 188, 197, 204, 386
AjuI GAANNNNNNNTTGG 4 cut(s) 48, 80, 215, 247
AluBI AGCT 3 cut(s) 488, 603, 695
AluI AGCT 3 cut(s) 488, 603, 695
Alw26I GTCTC 2 cut(s) 587, 619
AlwNI CAGNNNCTG 1 cut(s) 695
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 2 cut(s) 485, 692
ApoI RAATTY 3 cut(s) 93, 198, 553
Asp700I GAANNNNTTC 2 cut(s) 97, 192
AspS9I GGNCC 2 cut(s) 311, 545
AsuHPI GGTGA 1 cut(s) 442
AvaII GGWCC 1 cut(s) 545
BbvI GCAGC 2 cut(s) 497, 704
BccI CCATC 1 cut(s) 58
BciVI GTATCC 1 cut(s) 39
BcoDI GTCTC 2 cut(s) 587, 619
BfaI CTAG 4 cut(s) 263, 582, 600, 666
BfuI GTATCC 1 cut(s) 39
BisI GCNGC 2 cut(s) 486, 693
BlsI GCNGC 2 cut(s) 487, 694
Bme18I GGWCC 1 cut(s) 545
BmgT120I GGNCC 2 cut(s) 311, 545
BmiI GGNNCC 2 cut(s) 312, 476
BmsI GCATC 4 cut(s) 129, 190, 216, 678
BsaBI GATNNNNATC 1 cut(s) 377
BsaI GGTCTC 1 cut(s) 587
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 695
Bse1I ACTGG 2 cut(s) 325, 476
Bse8I GATNNNNATC 1 cut(s) 377
BseGI GGATG 1 cut(s) 669
BseJI GATNNNNATC 1 cut(s) 377
BseLI CCNNNNNNNGG 2 cut(s) 320, 695
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 2 cut(s) 325, 476
BseRI GAGGAG 1 cut(s) 520
BseXI GCAGC 2 cut(s) 497, 704
BsgI GTGCAG 1 cut(s) 551
BshFI GGCC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 320, 695
BsmAI GTCTC 2 cut(s) 587, 619
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 1 cut(s) 313
Bso31I GGTCTC 1 cut(s) 587
Bsp143I GATC 1 cut(s) 588
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 312, 476
BspTNI GGTCTC 1 cut(s) 587
BsrI ACTGG 2 cut(s) 325, 476
BssMI GATC 1 cut(s) 588
Bst4CI ACNGT 3 cut(s) 20, 40, 572
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 669
BstKTI GATC 1 cut(s) 591
BstMAI GTCTC 2 cut(s) 587, 619
BstMBI GATC 1 cut(s) 588
BstV1I GCAGC 2 cut(s) 497, 704
BsuI GTATCC 1 cut(s) 39
BsuRI GGCC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 669
BtsIMutI CAGTG 2 cut(s) 523, 568
CaiI CAGNNNCTG 1 cut(s) 695
Cfr13I GGNCC 2 cut(s) 311, 545
Csp6I GTAC 1 cut(s) 539
CviAII CATG 1 cut(s) 542
CviJI RGCY 8 cut(s) 175, 313, 395, 475, 488, 603, 609, 695
CviKI_1 RGCY 8 cut(s) 175, 313, 395, 475, 488, 603, 609, 695
CviQI GTAC 1 cut(s) 539
DdeI CTNAG 1 cut(s) 30
DpnI GATC 1 cut(s) 590
DpnII GATC 1 cut(s) 588
Eco31I GGTCTC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 545
Eco57I CTGAAG 1 cut(s) 499
EcoO109I RGGNCCY 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 93
FaeI CATG 1 cut(s) 545
FatI CATG 1 cut(s) 541
FauNDI CATATG 1 cut(s) 339
Fnu4HI GCNGC 2 cut(s) 486, 693
FokI GGATG 1 cut(s) 656
Fsp4HI GCNGC 2 cut(s) 486, 693
FspBI CTAG 4 cut(s) 263, 582, 600, 666
GluI GCNGC 2 cut(s) 486, 693
HaeIII GGCC 1 cut(s) 313
Hin1II CATG 1 cut(s) 545
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 3 cut(s) 33, 55, 625
Hpy188III TCNNGA 3 cut(s) 136, 185, 592
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 3 cut(s) 20, 40, 572
HpyCH4IV ACGT 2 cut(s) 491, 537
HpyCH4V TGCA 7 cut(s) 62, 115, 181, 296, 354, 568, 630
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 2 cut(s) 491, 537
Hsp92II CATG 1 cut(s) 545
Kzo9I GATC 1 cut(s) 588
LmnI GCTCC 2 cut(s) 480, 533
LpnPI CCDG 7 cut(s) 105, 149, 306, 457, 561, 681, 702
Lsp1109I GCAGC 2 cut(s) 497, 704
LweI GCATC 4 cut(s) 129, 190, 216, 678
MaeI CTAG 4 cut(s) 263, 582, 600, 666
MaeII ACGT 2 cut(s) 491, 537
MaeIII GTNAC 2 cut(s) 266, 650
MalI GATC 1 cut(s) 590
MboI GATC 1 cut(s) 588
MboII GAAGA 3 cut(s) 235, 399, 410
MfeI CAATTG 3 cut(s) 6, 103, 637
MluCI AATT 8 cut(s) 6, 93, 103, 198, 349, 414, 553, 637
MnlI CCTC 5 cut(s) 121, 186, 541, 607, 636
MroXI GAANNNNTTC 2 cut(s) 97, 192
MseI TTAA 6 cut(s) 255, 413, 441, 576, 633, 730
MspA1I CMGCKG 1 cut(s) 695
MunI CAATTG 3 cut(s) 6, 103, 637
Mva1269I GAATGC 1 cut(s) 115
NdeI CATATG 1 cut(s) 339
NdeII GATC 1 cut(s) 588
NlaIII CATG 1 cut(s) 545
NlaIV GGNNCC 2 cut(s) 312, 476
NmuCI GTSAC 1 cut(s) 650
PctI GAATGC 1 cut(s) 115
PdmI GAANNNNTTC 2 cut(s) 97, 192
PflMI CCANNNNNTGG 1 cut(s) 695
PkrI GCNGC 2 cut(s) 487, 694
PsiI TTATAA 1 cut(s) 327
PspN4I GGNNCC 2 cut(s) 312, 476
PspPI GGNCC 2 cut(s) 311, 545
PstNI CAGNNNCTG 1 cut(s) 695
PvuII CAGCTG 1 cut(s) 695
RsaI GTAC 1 cut(s) 540
RsaNI GTAC 1 cut(s) 539
SaqAI TTAA 6 cut(s) 255, 413, 441, 576, 633, 730
SatI GCNGC 2 cut(s) 486, 693
Sau3AI GATC 1 cut(s) 588
Sau96I GGNCC 2 cut(s) 311, 545
SfaNI GCATC 4 cut(s) 129, 190, 216, 678
SinI GGWCC 1 cut(s) 545
Sse9I AATT 8 cut(s) 6, 93, 103, 198, 349, 414, 553, 637
SspI AATATT 1 cut(s) 507
SspMI CTAG 4 cut(s) 263, 582, 600, 666
TaaI ACNGT 3 cut(s) 20, 40, 572
TaiI ACGT 2 cut(s) 494, 540
TaqI TCGA 1 cut(s) 591
TasI AATT 8 cut(s) 6, 93, 103, 198, 349, 414, 553, 637
Tru1I TTAA 6 cut(s) 255, 413, 441, 576, 633, 730
Tru9I TTAA 6 cut(s) 255, 413, 441, 576, 633, 730
TscAI CASTG 2 cut(s) 523, 575
TseFI GTSAC 1 cut(s) 650
TseI GCWGC 2 cut(s) 485, 692
Tsp45I GTSAC 1 cut(s) 650
TspDTI ATGAA 6 cut(s) 86, 185, 236, 410, 673, 697
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 2 cut(s) 523, 575
Van91I CCANNNNNTGG 1 cut(s) 695
VpaK11BI GGWCC 1 cut(s) 545
XapI RAATTY 3 cut(s) 93, 198, 553
XmnI GAANNNNTTC 2 cut(s) 97, 192
XspI CTAG 4 cut(s) 263, 582, 600, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.