Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Forward (+)

8778592 .. 8779839

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGATACTTTGATTATAGTAGGAAGCATGGTGACTCTCTGGTCGGAGATTCCTATGGACATCTTGAGATCAGTGTTCGAACGTTTGAGTTTTGTCGATCTCCACCGCGCTAAGATCGTGTGTTCGCATTGGTATTCATGTTCGAAACAATCGTTTCTCCGAAAAACCAGATCTCCCTTGGTGATTCTGTTTTCAGATGATGGTGATTGTACTTTGTATAACCCTGAGGAAGCTAGGGTTTACAAAAGTAAGAGAGACTTATCAAGGTATCGATTCCTAGCAAACTCAGGTAACTGGTTCTTAGTTCTTGATCCTAGATCCAATCTCTATATCATAGATTTGTTTAGCGAGAAGAAGATCAATCTTCCACCTCTAGATTCATTCAAAGGTTACAAATATAATCTTAAGAAAGTTGGAGCTAGAAAATTCAAGGAGCTAGTATCCGAATATCCCACTTCTTTCCACCATCATGCGAAGGATCTGAGAGGTCTTTTGTGGGTAGACGAGAAGAAAGAAGAGTACGTTGTTGTATGGTACTTCCGTAACAAGTATACGATGGATTCTTTAGCCTTTTGCAAGAACGGGGAAGATCATTACCGTGAGATGCCAACACACTATGGGTTACATGACATATCTGATATGGTACTACAACGTGGTGACCATATTTACCTCTCAACGAGTTGTAAATACCTTCAAAAACTTGATTTGTCTAGACAAGAAGGTATAAGGACCAAGAATGATGATATAATATCACGCTATCAATTGCCATGTCGTCCGACGAATTATAAATTGGTATATGATGCAAAGTGTTGGTGTAGCTATAACATTGCTGTTACATCATCAGGAGAAGTTTTGTTTGTCTTGAGCATCTTTTCGCAGTCAACAAGGCGTAGGATCTTCTTTCTATACAAGGAGGATCCTAATCCATCCCCGAGTGAGGTTATTTACAAGAATCTTGTTGAGGTAGATTCGTTAGGAGACGAGGCGCTTCTTCTGGATTTGGGTATCACCGTGCCTGCTGATAGTGACCTTGGTATAGAACCAAACTCTATCTATTTCACTCGCCATGATCGAGTAGCTAACCAGAAACGTTCATCTCCTGACATCTGTGTGTTCAATATTGTAACAAAGACCCTCAAACGTTTCCCAGGTCTCTCCAGCTTAAAGGATGCTCGATGGTTTCTCCCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

397

Amino Acids

46.33

Weight (kDa)

8.76

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	14 - 51	3.8e-08	F-box domain
F-box-like	PF12937	14 - 53	1.6e-06	F-box-like
Beta-prop_KIB1-4	PF03478	72 - 373	7.2e-42	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	786
AasI	GACNNNNNNGTC	1 cut(s)	40
AccI	GTMKAC	2 cut(s)	501, 551
AccII	CGCG	1 cut(s)	108
AciI	CCGC	1 cut(s)	106
AclI	AACGTT	3 cut(s)	82, 1090, 1141
AclWI	GGATC	6 cut(s)	305, 312, 486, 902, 911, 924
AcsI	RAATTY	1 cut(s)	425
AfaI	GTAC	4 cut(s)	211, 521, 536, 645
AfiI	CCNNNNNNNGG	1 cut(s)	937
AflII	CTTAAG	1 cut(s)	404
AgsI	TTSAA	4 cut(s)	385, 430, 695, 1117
AjnI	CCWGG	1 cut(s)	1147
AjuI	GAANNNNNNNTTGG	2 cut(s)	773, 805
AluBI	AGCT	6 cut(s)	233, 419, 436, 819, 1079, 1161
AluI	AGCT	6 cut(s)	233, 419, 436, 819, 1079, 1161
Alw26I	GTCTC	3 cut(s)	249, 972, 1157
AlwI	GGATC	6 cut(s)	305, 312, 486, 902, 911, 924
Ama87I	CYCGRG	1 cut(s)	931
ApoI	RAATTY	1 cut(s)	425
AspLEI	GCGC	2 cut(s)	110, 988
AspS9I	GGNCC	1 cut(s)	729
AsuHPI	GGTGA	5 cut(s)	43, 193, 215, 668, 1000
AsuII	TTCGAA	2 cut(s)	78, 143
AvaI	CYCGRG	1 cut(s)	931
AvaII	GGWCC	1 cut(s)	729
AxyI	CCTNAGG	1 cut(s)	225
BaeI	ACNNNNGTAYC	2 cut(s)	526, 559
BamHI	GGATCC	1 cut(s)	916
BccI	CCATC	5 cut(s)	194, 474, 550, 934, 1170
BciT130I	CCWGG	1 cut(s)	1149
BciVI	GTATCC	1 cut(s)	451
BcoDI	GTCTC	3 cut(s)	249, 972, 1157
BfaI	CTAG	7 cut(s)	234, 278, 315, 374, 420, 437, 711
BfoI	RGCGCY	1 cut(s)	989
BfrI	CTTAAG	1 cut(s)	404
BfuI	GTATCC	1 cut(s)	451
BglII	AGATCT	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	1149
Bme18I	GGWCC	1 cut(s)	729
BmeT110I	CYCGRG	1 cut(s)	931
BmgT120I	GGNCC	1 cut(s)	729
BmiI	GGNNCC	1 cut(s)	918
BmrFI	CCNGG	1 cut(s)	1149
BmsI	GCATC	4 cut(s)	594, 790, 876, 1159
BpmI	CTGGAG	1 cut(s)	1141
Bpu14I	TTCGAA	2 cut(s)	78, 143
BpuEI	CTTGAG	2 cut(s)	85, 883
Bsa29I	ATCGAT	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	921
BsaI	GGTCTC	1 cut(s)	1157
BsaJI	CCNNGG	3 cut(s)	177, 1030, 1147
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	937
Bse1I	ACTGG	1 cut(s)	299
Bse21I	CCTNAGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	825
Bse8I	GATNNNNATC	1 cut(s)	921
BseBI	CCWGG	1 cut(s)	1149
BseCI	ATCGAT	1 cut(s)	271
BseDI	CCNNGG	3 cut(s)	177, 1030, 1147
BseGI	GGATG	2 cut(s)	926, 1174
BseJI	GATNNNNATC	1 cut(s)	921
BseLI	CCNNNNNNNGG	1 cut(s)	937
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	3 cut(s)	216, 300, 473
BseNI	ACTGG	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	108
BshVI	ATCGAT	1 cut(s)	271
BsiHKCI	CYCGRG	1 cut(s)	931
BslI	CCNNNNNNNGG	1 cut(s)	937
BsmAI	GTCTC	3 cut(s)	249, 972, 1157
BsmBI	CGTCTC	1 cut(s)	972
Bso31I	GGTCTC	1 cut(s)	1157
BsoBI	CYCGRG	1 cut(s)	931
Bsp119I	TTCGAA	2 cut(s)	78, 143
BspACI	CCGC	1 cut(s)	106
BspCNI	CTCAG	3 cut(s)	217, 299, 474
BspDI	ATCGAT	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	918
BspPI	GGATC	6 cut(s)	305, 312, 486, 902, 911, 924
BspT104I	TTCGAA	2 cut(s)	78, 143
BspTI	CTTAAG	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	1157
BsrDI	GCAATG	1 cut(s)	825
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	3 cut(s)	177, 1030, 1147
BssNAI	GTATAC	1 cut(s)	552
BssT1I	CCWWGG	2 cut(s)	177, 1030
Bst1107I	GTATAC	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	1149
Bst4CI	ACNGT	2 cut(s)	599, 1012
Bst6I	CTCTTC	1 cut(s)	510
BstAFI	CTTAAG	1 cut(s)	404
BstBI	TTCGAA	2 cut(s)	78, 143
BstC8I	GCNNGC	1 cut(s)	1017
BstDEI	CTNAG	5 cut(s)	111, 225, 286, 301, 482
BstEII	GGTNACC	1 cut(s)	656
BstF5I	GGATG	2 cut(s)	926, 1174
BstFNI	CGCG	1 cut(s)	108
BstH2I	RGCGCY	1 cut(s)	989
BstHHI	GCGC	2 cut(s)	110, 988
BstMAI	GTCTC	3 cut(s)	249, 972, 1157
BstNI	CCWGG	1 cut(s)	1149
BstPI	GGTNACC	1 cut(s)	656
BstSCI	CCNGG	1 cut(s)	1147
BstUI	CGCG	1 cut(s)	108
BstX2I	RGATCY	5 cut(s)	170, 317, 478, 894, 916
BstYI	RGATCY	5 cut(s)	170, 317, 478, 894, 916
BstZ17I	GTATAC	1 cut(s)	552
Bsu15I	ATCGAT	1 cut(s)	271
Bsu36I	CCTNAGG	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	451
BsuTUI	ATCGAT	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	926, 1174
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	1017
CfoI	GCGC	2 cut(s)	110, 988
Cfr13I	GGNCC	1 cut(s)	729
ClaI	ATCGAT	1 cut(s)	271
Csp6I	GTAC	4 cut(s)	210, 520, 535, 644
CviAII	CATG	6 cut(s)	28, 138, 470, 626, 768, 1067
CviJI	RGCY	7 cut(s)	233, 419, 436, 569, 819, 1079, 1161
CviKI_1	RGCY	7 cut(s)	233, 419, 436, 569, 819, 1079, 1161
CviQI	GTAC	4 cut(s)	210, 520, 535, 644
DdeI	CTNAG	5 cut(s)	111, 225, 286, 301, 482
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Eco130I	CCWWGG	2 cut(s)	177, 1030
Eco31I	GGTCTC	1 cut(s)	1157
Eco47I	GGWCC	1 cut(s)	729
Eco81I	CCTNAGG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	931
Eco91I	GGTNACC	1 cut(s)	656
EcoO65I	GGTNACC	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	1147
EcoT14I	CCWWGG	2 cut(s)	177, 1030
ErhI	CCWWGG	2 cut(s)	177, 1030
Esp3I	CGTCTC	1 cut(s)	972
FaeI	CATG	6 cut(s)	31, 141, 473, 629, 771, 1070
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	6 cut(s)	27, 137, 469, 625, 767, 1066
FblI	GTMKAC	2 cut(s)	501, 551
FokI	GGATG	2 cut(s)	913, 1181
FspBI	CTAG	7 cut(s)	234, 278, 315, 374, 420, 437, 711
GlaI	GCGC	2 cut(s)	109, 987
GsuI	CTGGAG	1 cut(s)	1141
HaeII	RGCGCY	1 cut(s)	989
HhaI	GCGC	2 cut(s)	110, 988
Hin1II	CATG	6 cut(s)	31, 141, 473, 629, 771, 1070
Hin6I	GCGC	2 cut(s)	108, 986
HinP1I	GCGC	2 cut(s)	108, 986
HincII	GTYRAC	1 cut(s)	882
HindII	GTYRAC	1 cut(s)	882
HinfI	GANTC	8 cut(s)	34, 49, 184, 273, 377, 560, 952, 968
HphI	GGTGA	5 cut(s)	43, 193, 215, 668, 1000
Hpy166II	GTNNAC	4 cut(s)	241, 502, 552, 882
Hpy188I	TCNGA	7 cut(s)	46, 161, 196, 445, 483, 637, 777
Hpy188III	TCNNGA	9 cut(s)	64, 308, 374, 711, 843, 862, 995, 1100, 1191
Hpy8I	GTNNAC	4 cut(s)	241, 502, 552, 882
Hpy99I	CGWCG	1 cut(s)	781
HpyAV	CCTTC	3 cut(s)	469, 701, 713
HpyCH4III	ACNGT	2 cut(s)	599, 1012
HpyCH4IV	ACGT	5 cut(s)	82, 522, 652, 1090, 1141
HpyCH4V	TGCA	2 cut(s)	576, 803
HpyF3I	CTNAG	5 cut(s)	111, 225, 286, 301, 482
HpySE526I	ACGT	5 cut(s)	82, 522, 652, 1090, 1141
Hsp92II	CATG	6 cut(s)	31, 141, 473, 629, 771, 1070
HspAI	GCGC	2 cut(s)	108, 986
LmnI	GCTCC	2 cut(s)	416, 433
LweI	GCATC	4 cut(s)	594, 790, 876, 1159
MaeI	CTAG	7 cut(s)	234, 278, 315, 374, 420, 437, 711
MaeII	ACGT	5 cut(s)	82, 522, 652, 1090, 1141
MaeIII	GTNAC	9 cut(s)	31, 290, 389, 542, 621, 656, 832, 1025, 1123
MboII	GAAGA	8 cut(s)	356, 364, 367, 520, 527, 599, 889, 983
MfeI	CAATTG	1 cut(s)	761
MflI	RGATCY	5 cut(s)	170, 317, 478, 894, 916
MluCI	AATT	4 cut(s)	425, 761, 781, 788
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	3 cut(s)	24, 394, 800
MnlI	CCTC	9 cut(s)	220, 381, 479, 680, 907, 931, 955, 976, 1145
MseI	TTAA	2 cut(s)	405, 1163
MslI	CAYNNNNRTG	3 cut(s)	468, 597, 1109
MspCI	CTTAAG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	1149
MunI	CAATTG	1 cut(s)	761
MvaI	CCWGG	1 cut(s)	1149
MvnI	CGCG	1 cut(s)	108
NlaIII	CATG	6 cut(s)	31, 141, 473, 629, 771, 1070
NlaIV	GGNNCC	1 cut(s)	918
NmuCI	GTSAC	3 cut(s)	31, 656, 1025
NspV	TTCGAA	2 cut(s)	78, 143
PcsI	WCGNNNNNNNCGW	2 cut(s)	149, 1069
PfeI	GAWTC	7 cut(s)	49, 184, 273, 377, 560, 952, 968
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PsiI	TTATAA	1 cut(s)	786
Psp1406I	AACGTT	3 cut(s)	82, 1090, 1141
Psp6I	CCWGG	1 cut(s)	1147
PspEI	GGTNACC	1 cut(s)	656
PspGI	CCWGG	1 cut(s)	1147
PspN4I	GGNNCC	1 cut(s)	918
PspPI	GGNCC	1 cut(s)	729
PsuI	RGATCY	5 cut(s)	170, 317, 478, 894, 916
RsaI	GTAC	4 cut(s)	211, 521, 536, 645
RsaNI	GTAC	4 cut(s)	210, 520, 535, 644
RseI	CAYNNNNRTG	3 cut(s)	468, 597, 1109
SaqAI	TTAA	2 cut(s)	405, 1163
Sau96I	GGNCC	1 cut(s)	729
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	1149
SfaNI	GCATC	4 cut(s)	594, 790, 876, 1159
SfuI	TTCGAA	2 cut(s)	78, 143
SinI	GGWCC	1 cut(s)	729
SmiMI	CAYNNNNRTG	3 cut(s)	468, 597, 1109
SmlI	CTYRAG	3 cut(s)	64, 404, 862
SmoI	CTYRAG	3 cut(s)	64, 404, 862
Sse9I	AATT	4 cut(s)	425, 761, 781, 788
SsiI	CCGC	1 cut(s)	106
SspI	AATATT	1 cut(s)	1120
SspMI	CTAG	7 cut(s)	234, 278, 315, 374, 420, 437, 711
StyD4I	CCNGG	1 cut(s)	1147
StyI	CCWWGG	2 cut(s)	177, 1030
TaaI	ACNGT	2 cut(s)	599, 1012
TaiI	ACGT	5 cut(s)	85, 525, 655, 1093, 1144
TaqI	TCGA	6 cut(s)	78, 96, 143, 271, 1072, 1174
TasI	AATT	4 cut(s)	425, 761, 781, 788
TatI	WGTACW	1 cut(s)	209
TfiI	GAWTC	7 cut(s)	49, 184, 273, 377, 560, 952, 968
Tru1I	TTAA	2 cut(s)	405, 1163
Tru9I	TTAA	2 cut(s)	405, 1163
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	3 cut(s)	31, 656, 1025
Tsp45I	GTSAC	3 cut(s)	31, 656, 1025
TspDTI	ATGAA	3 cut(s)	126, 369, 1083
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	1 cut(s)	78
Vha464I	CTTAAG	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	729
XapI	RAATTY	1 cut(s)	425
XbaI	TCTAGA	2 cut(s)	373, 710
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmiI	GTMKAC	2 cut(s)	501, 551
XspI	CTAG	7 cut(s)	234, 278, 315, 374, 420, 437, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.