Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Forward (+)

1684589 .. 1687520

Gene Structure 2932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG027700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAAATTCTTGGGAGAGTTGGATTACCTTGTTGTTGACATGCCCCCTAGAACTGGTGATATTCAGCTTACTTTGTGCCAGGGTTCCAGATTAAGAGAATTCCATCAATCAAATTATGCATTCCCCTTCATATTTGTATTTCAAGTAGTTTCATTGACTGCTGCTGTTATTGTTACCATTCCTCAAAAGCTAGCATTTATTGATGTCGCAACGCATGTTTTCAAGGTTGAAGGAATTAAGAATGCTCCTCCAACTCTGAAAGATGCTCCTTTCAGAATCGGAATGTACTTAAAACCTGACGCGCCAGTTTATGTGGAAAAGAGCTCGAATTTCGCCGTCGACAGTGGTAGTAGGCTTGAAGATCTTGTAAGGTTGACCAGTAGCAATCCTGAGGTGGTAGAGATCAATGAGCCCAAGTGCGTTGAGTATTTGAACAAGATACATGACCAAATTGTTGAGCTAAAACAGAATAGTATCAAAAAGAGAAATGCAAACTGGTCTGGGCTTCCCACTGAGCTTCTAGAGTCCATCTTGAAAAAGCTTATACCTTCTGAATTTGACATCCTTGGCTTTAGAGATATTCGATATTTTAAAGCCGTCTGTCATTCCTGGAGAACCGCCGCAATATCTTGTAGCTCTTACGTCCCGTTGCCTCGAACTCCGTGTCTCTTGCTTCATGAAAACAACTCCTCCCTTTTTGATCCCATAGGAAAGAAGGTGCACAAAATCAGGAACATCTGTGACTTTTTTCCTCGAGCCACCTGTGTGGGTTCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

259

Amino Acids

29.26

Weight (kDa)

8.62

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParA	PF10609	5 - 28	5.7e-07	NUBPL iron-transfer P-loop NTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	1 cut(s)	302
AciI	CCGC	2 cut(s)	618, 621
AclWI	GGATC	1 cut(s)	695
AcsI	RAATTY	4 cut(s)	5, 98, 328, 554
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	6 cut(s)	143, 223, 230, 359, 433, 535
AjnI	CCWGG	2 cut(s)	78, 608
AleI	CACNNNNGTG	1 cut(s)	764
AluBI	AGCT	7 cut(s)	67, 190, 324, 460, 517, 541, 636
AluI	AGCT	7 cut(s)	67, 190, 324, 460, 517, 541, 636
Alw21I	GWGCWC	2 cut(s)	326, 723
Alw26I	GTCTC	1 cut(s)	671
Alw44I	GTGCAC	1 cut(s)	719
AlwI	GGATC	1 cut(s)	695
Ama87I	CYCGRG	1 cut(s)	753
ApaLI	GTGCAC	1 cut(s)	719
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	4 cut(s)	5, 98, 328, 554
ArsI	GACNNNNNNTTYG	2 cut(s)	649, 681
AspLEI	GCGC	1 cut(s)	304
AsuHPI	GGTGA	1 cut(s)	68
AsuNHI	GCTAGC	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	753
AxyI	CCTNAGG	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	723
BanII	GRGCYC	2 cut(s)	326, 414
Bbv12I	GWGCWC	2 cut(s)	326, 723
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	111, 536
BceAI	ACGGC	2 cut(s)	320, 581
BciT130I	CCWGG	2 cut(s)	80, 610
BcoDI	GTCTC	1 cut(s)	671
BfaI	CTAG	3 cut(s)	48, 191, 521
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	2 cut(s)	162, 621
BlsI	GCNGC	2 cut(s)	163, 622
Bme1390I	CCNGG	2 cut(s)	80, 610
BmeT110I	CYCGRG	1 cut(s)	753
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	2 cut(s)	80, 610
BmsI	GCATC	1 cut(s)	253
BmtI	GCTAGC	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	631
BsaJI	CCNNGG	2 cut(s)	79, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	674, 704
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	4 cut(s)	58, 305, 378, 500
Bse21I	CCTNAGG	1 cut(s)	390
BseBI	CCWGG	2 cut(s)	80, 610
BseDI	CCNNGG	2 cut(s)	79, 565
BseGI	GGATG	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	381, 504
BseNI	ACTGG	4 cut(s)	58, 305, 378, 500
BseRI	GAGGAG	2 cut(s)	237, 679
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	302
BsiHKAI	GWGCWC	2 cut(s)	326, 723
BsiHKCI	CYCGRG	1 cut(s)	753
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	671
BsmFI	GGGAC	1 cut(s)	629
BsmI	GAATGC	2 cut(s)	119, 247
BsoBI	CYCGRG	1 cut(s)	753
Bsp1286I	GDGCHC	3 cut(s)	326, 414, 723
Bsp143I	GATC	3 cut(s)	361, 402, 700
BspACI	CCGC	2 cut(s)	618, 621
BspCNI	CTCAG	2 cut(s)	382, 505
BspFNI	CGCG	1 cut(s)	302
BspHI	TCATGA	2 cut(s)	676, 776
BspLI	GGNNCC	1 cut(s)	85
BspOI	GCTAGC	1 cut(s)	194
BspPI	GGATC	1 cut(s)	695
BsrI	ACTGG	4 cut(s)	58, 305, 378, 500
BssECI	CCNNGG	2 cut(s)	79, 565
BssMI	GATC	3 cut(s)	361, 402, 700
BssT1I	CCWWGG	1 cut(s)	565
Bst2UI	CCWGG	2 cut(s)	80, 610
Bst4CI	ACNGT	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	2 cut(s)	390, 513
BstF5I	GGATG	1 cut(s)	561
BstFNI	CGCG	1 cut(s)	302
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	3 cut(s)	364, 405, 703
BstMAI	GTCTC	1 cut(s)	671
BstMBI	GATC	3 cut(s)	361, 402, 700
BstNI	CCWGG	2 cut(s)	80, 610
BstNSI	RCATGY	2 cut(s)	43, 218
BstSCI	CCNGG	2 cut(s)	78, 608
BstSLI	GKGCMC	1 cut(s)	723
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	361
Bsu36I	CCTNAGG	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	349, 510
Cac8I	GCNNGC	1 cut(s)	192
CciI	TCATGA	2 cut(s)	676, 776
CfoI	GCGC	1 cut(s)	304
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	5 cut(s)	40, 215, 443, 677, 777
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	2 cut(s)	390, 513
DpnI	GATC	3 cut(s)	363, 404, 702
DpnII	GATC	3 cut(s)	361, 402, 700
DraI	TTTAAA	1 cut(s)	592
Ecl136II	GAGCTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	565
Eco24I	GRGCYC	2 cut(s)	326, 414
Eco53kI	GAGCTC	1 cut(s)	324
Eco81I	CCTNAGG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	78, 608
EcoT14I	CCWWGG	1 cut(s)	565
EcoT22I	ATGCAT	1 cut(s)	121
EcoT38I	GRGCYC	2 cut(s)	326, 414
ErhI	CCWWGG	1 cut(s)	565
FaeI	CATG	5 cut(s)	43, 218, 446, 680, 780
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	5 cut(s)	39, 214, 442, 676, 776
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	162, 621
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	2 cut(s)	326, 414
Fsp4HI	GCNGC	2 cut(s)	162, 621
FspBI	CTAG	3 cut(s)	48, 191, 521
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	2 cut(s)	162, 621
GsuI	CTGGAG	1 cut(s)	631
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	5 cut(s)	43, 218, 446, 680, 780
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	3 cut(s)	37, 340, 375
HindII	GTYRAC	3 cut(s)	37, 340, 375
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	2 cut(s)	276, 524
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	4 cut(s)	37, 340, 375, 721
Hpy188I	TCNGA	4 cut(s)	258, 275, 281, 553
Hpy188III	TCNNGA	7 cut(s)	87, 389, 521, 532, 677, 730, 777
Hpy8I	GTNNAC	4 cut(s)	37, 340, 375, 721
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	4 cut(s)	136, 224, 558, 709
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	3 cut(s)	119, 491, 721
HpyF3I	CTNAG	2 cut(s)	390, 513
HpySE526I	ACGT	1 cut(s)	642
Hsp92II	CATG	5 cut(s)	43, 218, 446, 680, 780
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	3 cut(s)	361, 402, 700
LmnI	GCTCC	2 cut(s)	250, 271
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	3 cut(s)	48, 191, 521
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	2 cut(s)	172, 740
MalI	GATC	3 cut(s)	363, 404, 702
MboI	GATC	3 cut(s)	361, 402, 700
MboII	GAAGA	1 cut(s)	371
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	3 cut(s)	326, 414, 723
MluCI	AATT	7 cut(s)	5, 98, 112, 234, 328, 450, 554
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	6 cut(s)	192, 258, 385, 663, 700, 762
Mph1103I	ATGCAT	1 cut(s)	121
MseI	TTAA	4 cut(s)	92, 237, 290, 591
MslI	CAYNNNNRTG	1 cut(s)	764
MspR9I	CCNGG	2 cut(s)	80, 610
Mva1269I	GAATGC	2 cut(s)	119, 247
MvaI	CCWGG	2 cut(s)	80, 610
MvnI	CGCG	1 cut(s)	302
NdeII	GATC	3 cut(s)	361, 402, 700
NheI	GCTAGC	1 cut(s)	190
NlaIII	CATG	5 cut(s)	43, 218, 446, 680, 780
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	740
NsiI	ATGCAT	1 cut(s)	121
NspI	RCATGY	2 cut(s)	43, 218
OliI	CACNNNNGTG	1 cut(s)	764
PaeR7I	CTCGAG	1 cut(s)	753
PagI	TCATGA	2 cut(s)	676, 776
PctI	GAATGC	2 cut(s)	119, 247
PfeI	GAWTC	1 cut(s)	276
PfoI	TCCNGGA	1 cut(s)	608
PkrI	GCNGC	2 cut(s)	163, 622
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
Psp124BI	GAGCTC	1 cut(s)	326
Psp6I	CCWGG	2 cut(s)	78, 608
PspGI	CCWGG	2 cut(s)	78, 608
PspN4I	GGNNCC	1 cut(s)	85
PspXI	VCTCGAGB	1 cut(s)	753
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	764
SacI	GAGCTC	1 cut(s)	326
SalI	GTCGAC	1 cut(s)	338
SaqAI	TTAA	4 cut(s)	92, 237, 290, 591
SatI	GCNGC	2 cut(s)	162, 621
Sau3AI	GATC	3 cut(s)	361, 402, 700
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	2 cut(s)	80, 610
SduI	GDGCHC	3 cut(s)	326, 414, 723
SfaNI	GCATC	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	753
SlaI	CTCGAG	1 cut(s)	753
SmiMI	CAYNNNNRTG	1 cut(s)	764
SmlI	CTYRAG	1 cut(s)	753
SmoI	CTYRAG	1 cut(s)	753
Sse9I	AATT	7 cut(s)	5, 98, 112, 234, 328, 450, 554
SsiI	CCGC	2 cut(s)	618, 621
SspMI	CTAG	3 cut(s)	48, 191, 521
SstI	GAGCTC	1 cut(s)	326
StyD4I	CCNGG	2 cut(s)	78, 608
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	1 cut(s)	645
TaqI	TCGA	5 cut(s)	326, 339, 583, 655, 754
TasI	AATT	7 cut(s)	5, 98, 112, 234, 328, 450, 554
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	1 cut(s)	623
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	4 cut(s)	92, 237, 290, 591
Tru9I	TTAA	4 cut(s)	92, 237, 290, 591
TscAI	CASTG	2 cut(s)	349, 517
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	6 cut(s)	17, 118, 141, 665, 693, 762
TspGWI	ACGGA	1 cut(s)	651
TspRI	CASTG	2 cut(s)	349, 517
VneI	GTGCAC	1 cut(s)	719
XapI	RAATTY	4 cut(s)	5, 98, 328, 554
XbaI	TCTAGA	1 cut(s)	520
XceI	RCATGY	2 cut(s)	43, 218
XhoI	CTCGAG	1 cut(s)	753
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	3 cut(s)	48, 191, 521
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.