Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Forward (+)

11736472 .. 11737767

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAGAGGAAACATAACCCTAATTCCTGGTCTGATCTTCCTCACGATCTCTTGAACTTGGTGTTCGAACGCCTCAGCTTTGCTAATTTCAACCGAGCCAGGTCCGTGTGTTCGTCTTGGTACTCTGCTTCGAGACAATCGGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTTCCCTGAAGACAACAACAACAAGAACAACAGTTCATGCACGTTGTTCAATCCCGATGAAAAAGACAAACTTTACAAAACGCAACATCTTGATGAGGAATTTGCAAAGAGTGTTTGTAGGGCAACCTATGGAAGTTGGTTCCTAATGGTAGATCCTCTGTTTAATCTCTATATTTTGAATCTCTTTACCCGCGAGAGAATCAATCTACATCCCGTGGAGTTACTGTGGAAAGATTACGAGTTAGGCGTTTCAAGTCGCAACCGAATGAAGTCGAGAGGTGGGAACGTACGATCTCCTGTGTTTTGGATTGACGAGATAACCAAAGATTATGTTGTTCTTTGGGGACTTAGAGATTGGTGTGTATTTTATTCCAAGAAAGGAGATACCTCCTGGAATCAAATCCCCCAAACTCCAGATTGTTACCGTTTGCGTTACAAGGATCACAAGCTTTACTTCCAAGGCTACTTCTCTAGTTTCAAAATCTTCGATCTTTCTGGAGAGATTCCACAACAAACCTTTGACTCGCTTGTTTTTGTGGACCATTGTCACTTTCGTCGTTGGGTCCTTTATTCCACACTTGTAGTCACACTCACAGGAAAAGTCCTCAACGTTGAAAAAATGATGGACTGCTCTTTCACGGTTTTCGAGGTTTGTTCATCAGGAAGACGGATTCATTCTCTGGGAGATGAGTCAATTCTTTTGGAACAAGGCATCACTGTGCTCGCCAATGACACTAATGGATTCATTAGAAATTCCATCTATTTCAATAATGATTGTGAAAACATTGAAAAGCACACTTACGACATGTTTATCTTCAATCTTGAGACACAGAAGACGGAGCCACTACACACATTTGATAGTTCTTCATTTCAATTCTCTAGAGCTCATTGGTTCGTACCTAGTTTCACGCTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

363

Amino Acids

42.91

Weight (kDa)

6.64

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	10 - 47	3.1e-09	F-box domain
F-box-like	PF12937	10 - 45	1.5e-06	F-box-like
Beta-prop_KIB1-4	PF03478	74 - 331	4.9e-40	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AccII	CGCG	1 cut(s)	366
AciI	CCGC	1 cut(s)	364
AclI	AACGTT	1 cut(s)	783
AclWI	GGATC	3 cut(s)	151, 320, 621
AcsI	RAATTY	2 cut(s)	272, 925
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	3 cut(s)	122, 462, 1071
AflIII	ACRYGT	1 cut(s)	978
AjnI	CCWGG	3 cut(s)	26, 98, 563
AluBI	AGCT	3 cut(s)	78, 622, 1058
AluI	AGCT	3 cut(s)	78, 622, 1058
Alw21I	GWGCWC	2 cut(s)	897, 1060
Alw26I	GTCTC	2 cut(s)	127, 992
AlwI	GGATC	3 cut(s)	151, 320, 621
ApoI	RAATTY	2 cut(s)	272, 925
AspS9I	GGNCC	3 cut(s)	102, 712, 736
AsuII	TTCGAA	1 cut(s)	66
AvaII	GGWCC	3 cut(s)	102, 712, 736
BaeGI	GKGCMC	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	1060
BbsI	GAAGAC	3 cut(s)	189, 844, 1013
Bbv12I	GWGCWC	2 cut(s)	897, 1060
BbvCI	CCTCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	790, 938
BciT130I	CCWGG	3 cut(s)	28, 100, 565
BcoDI	GTCTC	2 cut(s)	127, 992
BfaI	CTAG	3 cut(s)	645, 1053, 1074
Bme1390I	CCNGG	3 cut(s)	28, 100, 565
Bme18I	GGWCC	3 cut(s)	102, 712, 736
BmgT120I	GGNCC	3 cut(s)	102, 712, 736
BmiI	GGNNCC	4 cut(s)	144, 314, 737, 1014
BmrFI	CCNGG	3 cut(s)	28, 100, 565
BmsI	GCATC	1 cut(s)	894
BoxI	GACNNNNGTC	1 cut(s)	717
BpiI	GAAGAC	3 cut(s)	189, 844, 1013
BpmI	CTGGAG	2 cut(s)	570, 690
Bpu10I	CCTNAGC	1 cut(s)	74
Bpu14I	TTCGAA	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	1016
BsaJI	CCNNGG	2 cut(s)	387, 631
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
BseBI	CCWGG	3 cut(s)	28, 100, 565
BseDI	CCNNGG	2 cut(s)	387, 631
BseGI	GGATG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	88
BseSI	GKGCMC	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	366
BshNI	GGYRCC	1 cut(s)	142
BsiHKAI	GWGCWC	2 cut(s)	897, 1060
BsiWI	CGTACG	1 cut(s)	460
BslFI	GGGAC	1 cut(s)	531
BsmAI	GTCTC	2 cut(s)	127, 992
BsmFI	GGGAC	1 cut(s)	531
Bsp119I	TTCGAA	1 cut(s)	66
Bsp1286I	GDGCHC	3 cut(s)	147, 897, 1060
Bsp143I	GATC	7 cut(s)	34, 46, 156, 325, 464, 613, 661
BspACI	CCGC	1 cut(s)	364
BspCNI	CTCAG	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	366
BspLI	GGNNCC	4 cut(s)	144, 314, 737, 1014
BspPI	GGATC	3 cut(s)	151, 320, 621
BspT104I	TTCGAA	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	387, 631
BssMI	GATC	7 cut(s)	34, 46, 156, 325, 464, 613, 661
BssT1I	CCWWGG	1 cut(s)	631
Bst2UI	CCWGG	3 cut(s)	28, 100, 565
Bst4CI	ACNGT	5 cut(s)	206, 399, 599, 814, 892
Bst6I	CTCTTC	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	897
BstDEI	CTNAG	2 cut(s)	74, 521
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	1 cut(s)	366
BstKTI	GATC	7 cut(s)	37, 49, 159, 328, 467, 616, 664
BstMAI	GTCTC	2 cut(s)	127, 992
BstMBI	GATC	7 cut(s)	34, 46, 156, 325, 464, 613, 661
BstNI	CCWGG	3 cut(s)	28, 100, 565
BstNSI	RCATGY	1 cut(s)	982
BstPAI	GACNNNNGTC	1 cut(s)	717
BstSCI	CCNGG	3 cut(s)	26, 98, 563
BstSLI	GKGCMC	1 cut(s)	147
BstUI	CGCG	1 cut(s)	366
BstV2I	GAAGAC	3 cut(s)	189, 844, 1013
BstX2I	RGATCY	2 cut(s)	156, 325
BstYI	RGATCY	2 cut(s)	156, 325
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	888
Cac8I	GCNNGC	1 cut(s)	897
Cfr13I	GGNCC	3 cut(s)	102, 712, 736
Csp6I	GTAC	3 cut(s)	121, 461, 1070
CviAII	CATG	3 cut(s)	210, 979, 1089
CviJI	RGCY	7 cut(s)	78, 98, 166, 622, 636, 1015, 1058
CviKI_1	RGCY	7 cut(s)	78, 98, 166, 622, 636, 1015, 1058
CviQI	GTAC	3 cut(s)	121, 461, 1070
DdeI	CTNAG	2 cut(s)	74, 521
DpnI	GATC	7 cut(s)	36, 48, 158, 327, 466, 615, 663
DpnII	GATC	7 cut(s)	34, 46, 156, 325, 464, 613, 661
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	1058
Eco130I	CCWWGG	1 cut(s)	631
Eco24I	GRGCYC	1 cut(s)	1060
Eco47I	GGWCC	3 cut(s)	102, 712, 736
Eco53kI	GAGCTC	1 cut(s)	1058
Eco57I	CTGAAG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	1058
EcoO109I	RGGNCCY	1 cut(s)	736
EcoRII	CCWGG	3 cut(s)	26, 98, 563
EcoT14I	CCWWGG	1 cut(s)	631
EcoT38I	GRGCYC	1 cut(s)	1060
ErhI	CCWWGG	1 cut(s)	631
FaeI	CATG	3 cut(s)	213, 982, 1092
FaiI	YATR	7 cut(s)	15, 211, 303, 345, 504, 980, 1090
FalI	AAGNNNNNCTT	4 cut(s)	228, 260, 611, 643
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	3 cut(s)	209, 978, 1088
FauI	CCCGC	1 cut(s)	371
FokI	GGATG	1 cut(s)	369
FriOI	GRGCYC	1 cut(s)	1060
FspBI	CTAG	3 cut(s)	645, 1053, 1074
GsuI	CTGGAG	2 cut(s)	570, 690
Hin1II	CATG	3 cut(s)	213, 982, 1092
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	9 cut(s)	169, 352, 372, 568, 676, 695, 844, 863, 915
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188I	TCNGA	2 cut(s)	34, 156
Hpy8I	GTNNAC	1 cut(s)	712
Hpy99I	CGWCG	1 cut(s)	732
HpyCH4III	ACNGT	5 cut(s)	206, 399, 599, 814, 892
HpyCH4IV	ACGT	3 cut(s)	215, 459, 783
HpyCH4V	TGCA	2 cut(s)	213, 278
HpyF3I	CTNAG	2 cut(s)	74, 521
HpySE526I	ACGT	3 cut(s)	215, 459, 783
Hsp92II	CATG	3 cut(s)	213, 982, 1092
Kzo9I	GATC	7 cut(s)	34, 46, 156, 325, 464, 613, 661
LmnI	GCTCC	1 cut(s)	1012
LweI	GCATC	1 cut(s)	894
MaeI	CTAG	3 cut(s)	645, 1053, 1074
MaeII	ACGT	3 cut(s)	215, 459, 783
MaeIII	GTNAC	5 cut(s)	393, 593, 605, 719, 757
MalI	GATC	7 cut(s)	36, 48, 158, 327, 466, 615, 663
MboI	GATC	7 cut(s)	34, 46, 156, 325, 464, 613, 661
MboII	GAAGA	8 cut(s)	29, 166, 194, 649, 849, 979, 1018, 1029
MflI	RGATCY	2 cut(s)	156, 325
MhlI	GDGCHC	3 cut(s)	147, 897, 1060
MluCI	AATT	6 cut(s)	22, 85, 272, 867, 925, 1046
MlyI	GAGTC	2 cut(s)	689, 872
MnlI	CCTC	8 cut(s)	51, 83, 262, 339, 443, 571, 788, 814
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	2 cut(s)	264, 890
MspR9I	CCNGG	3 cut(s)	28, 100, 565
MvaI	CCWGG	3 cut(s)	28, 100, 565
MvnI	CGCG	1 cut(s)	366
NdeII	GATC	7 cut(s)	34, 46, 156, 325, 464, 613, 661
NlaIII	CATG	3 cut(s)	213, 982, 1092
NlaIV	GGNNCC	4 cut(s)	144, 314, 737, 1014
NmuCI	GTSAC	2 cut(s)	719, 757
NspI	RCATGY	1 cut(s)	982
NspV	TTCGAA	1 cut(s)	66
PciI	ACATGT	1 cut(s)	978
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PfeI	GAWTC	7 cut(s)	169, 352, 372, 568, 676, 844, 915
Pfl23II	CGTACG	1 cut(s)	460
PfoI	TCCNGGA	1 cut(s)	563
PleI	GAGTC	2 cut(s)	689, 871
PpsI	GAGTC	2 cut(s)	689, 871
PpuMI	RGGWCCY	1 cut(s)	736
PscI	ACATGT	1 cut(s)	978
PshAI	GACNNNNGTC	1 cut(s)	717
Psp124BI	GAGCTC	1 cut(s)	1060
Psp1406I	AACGTT	1 cut(s)	783
Psp5II	RGGWCCY	1 cut(s)	736
Psp6I	CCWGG	3 cut(s)	26, 98, 563
PspGI	CCWGG	3 cut(s)	26, 98, 563
PspLI	CGTACG	1 cut(s)	460
PspN4I	GGNNCC	4 cut(s)	144, 314, 737, 1014
PspPI	GGNCC	3 cut(s)	102, 712, 736
PspPPI	RGGWCCY	1 cut(s)	736
PsuI	RGATCY	2 cut(s)	156, 325
RsaI	GTAC	3 cut(s)	122, 462, 1071
RsaNI	GTAC	3 cut(s)	121, 461, 1070
RseI	CAYNNNNRTG	2 cut(s)	264, 890
SacI	GAGCTC	1 cut(s)	1060
SaqAI	TTAA	1 cut(s)	336
Sau3AI	GATC	7 cut(s)	34, 46, 156, 325, 464, 613, 661
Sau96I	GGNCC	3 cut(s)	102, 712, 736
SchI	GAGTC	2 cut(s)	689, 872
ScrFI	CCNGG	3 cut(s)	28, 100, 565
SduI	GDGCHC	3 cut(s)	147, 897, 1060
SfaNI	GCATC	1 cut(s)	894
SfuI	TTCGAA	1 cut(s)	66
SinI	GGWCC	3 cut(s)	102, 712, 736
SmiMI	CAYNNNNRTG	2 cut(s)	264, 890
SmlI	CTYRAG	1 cut(s)	995
SmoI	CTYRAG	1 cut(s)	995
Sse9I	AATT	6 cut(s)	22, 85, 272, 867, 925, 1046
SsiI	CCGC	1 cut(s)	364
SspMI	CTAG	3 cut(s)	645, 1053, 1074
SstI	GAGCTC	1 cut(s)	1060
StyD4I	CCNGG	3 cut(s)	26, 98, 563
StyI	CCWWGG	1 cut(s)	631
TaaI	ACNGT	5 cut(s)	206, 399, 599, 814, 892
TaiI	ACGT	3 cut(s)	218, 462, 786
TaqI	TCGA	5 cut(s)	66, 131, 446, 660, 819
TasI	AATT	6 cut(s)	22, 85, 272, 867, 925, 1046
TfiI	GAWTC	7 cut(s)	169, 352, 372, 568, 676, 844, 915
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	895
TseFI	GTSAC	2 cut(s)	719, 757
Tsp45I	GTSAC	2 cut(s)	719, 757
TspDTI	ATGAA	7 cut(s)	198, 246, 455, 819, 836, 907, 1029
TspGWI	ACGGA	3 cut(s)	94, 856, 1025
TspRI	CASTG	1 cut(s)	895
VpaK11BI	GGWCC	3 cut(s)	102, 712, 736
XapI	RAATTY	2 cut(s)	272, 925
XbaI	TCTAGA	1 cut(s)	1052
XceI	RCATGY	1 cut(s)	982
XspI	CTAG	3 cut(s)	645, 1053, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.