Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Reverse (-)

10045635 .. 10046372

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG069700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCACATCTTTTTAATCCAATTTCAAGAAGTAGAATGCTACTTCCAAGCATTCAGACTCTTCAAAGTTACCGTATTTCTAAAGGTATTATTTCCTCCAATCCATTTACCAACAAAAACTTTTTTGTGGTAGTGGCATGTCATGGAGGACTTGCATTCTGTAAACATGAAGACAAATCATGGACTAAGTTCAATGATGCTCTTAGCTATCTCTATGACGATATTATGTTTTACAATGACAAGCTATTTGCATTGGCTATGGAGTCACTTGAGGTCTGGGACTGTAGTGGATCCTCTCCTATAAAAACCGTGCATGTTCAAGACTCTGTTGCTCACATATCAGTTGATCATACCTATTTGGTGGAGTCATTGGGCGAGATCTTACGTGTGGGAAAAGGTGGACGACGTATTACTACACACTTTTTTGTGGAGAAGTTAAATTTGACCGATGGGAAGTGGGAGAAAGTGCAAAATTTAGGTGACCAAATTCTATTTTTGTTTCATAATCAGTTACTGTCACTACCTAACCAATGTTTCCTAGGATGTGAAGAAAACTCAATCTACTTCGGAACGAGTGATTGTGTCACACATTGTGGTCAAGAAATTGGAATATACAACCTTCAATACAACATGGTTCGTAGGATAGAGTCCATATGTATTCTAATTGGCGAACATCTCGAAGAACTAAAGCATTGTTATATTGCACAACCTGTTTGGATGGTTCCTAATCCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

245

Amino Acids

28.07

Weight (kDa)

6.1

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	3 - 206	3.4e-39	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	285, 298
AcsI	RAATTY	3 cut(s)	439, 472, 486
AdeI	CACNNNGTG	1 cut(s)	593
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	5 cut(s)	27, 65, 193, 320, 623
AluBI	AGCT	2 cut(s)	207, 244
AluI	AGCT	2 cut(s)	207, 244
AlwI	GGATC	2 cut(s)	285, 298
AlwNI	CAGNNNCTG	1 cut(s)	514
ApoI	RAATTY	3 cut(s)	439, 472, 486
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AspA2I	CCTAGG	1 cut(s)	538
AsuHPI	GGTGA	1 cut(s)	491
AvrII	CCTAGG	1 cut(s)	538
BamHI	GGATCC	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	177
BccI	CCATC	2 cut(s)	443, 712
BclI	TGATCA	1 cut(s)	346
BfaI	CTAG	1 cut(s)	539
BfmI	CTRYAG	1 cut(s)	283
BglII	AGATCT	1 cut(s)	378
BlnI	CCTAGG	1 cut(s)	538
BmiI	GGNNCC	2 cut(s)	292, 723
BmsI	GCATC	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	386
BsaJI	CCNNGG	2 cut(s)	538, 731
BseDI	CCNNGG	2 cut(s)	538, 731
BseGI	GGATG	2 cut(s)	548, 723
BslFI	GGGAC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	3 cut(s)	42, 51, 155
Bsp143I	GATC	3 cut(s)	290, 346, 378
Bsp19I	CCATGG	1 cut(s)	731
BspLI	GGNNCC	2 cut(s)	292, 723
BspPI	GGATC	2 cut(s)	285, 298
BssECI	CCNNGG	2 cut(s)	538, 731
BssMI	GATC	3 cut(s)	290, 346, 378
BssT1I	CCWWGG	2 cut(s)	538, 731
Bst4CI	ACNGT	4 cut(s)	74, 284, 310, 516
Bst6I	CTCTTC	1 cut(s)	66
BstBAI	YACGTR	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	186, 203
BstDSI	CCRYGG	1 cut(s)	731
BstEII	GGTNACC	1 cut(s)	479
BstF5I	GGATG	2 cut(s)	548, 723
BstKTI	GATC	3 cut(s)	293, 349, 381
BstMBI	GATC	3 cut(s)	290, 346, 378
BstNSI	RCATGY	2 cut(s)	141, 317
BstPI	GGTNACC	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	283
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	2 cut(s)	290, 378
BstYI	RGATCY	2 cut(s)	290, 378
BtgI	CCRYGG	1 cut(s)	731
BtsCI	GGATG	2 cut(s)	548, 723
CaiI	CAGNNNCTG	1 cut(s)	514
CviAII	CATG	7 cut(s)	138, 143, 167, 180, 314, 631, 732
CviJI	RGCY	3 cut(s)	207, 244, 257
CviKI_1	RGCY	3 cut(s)	207, 244, 257
DdeI	CTNAG	2 cut(s)	186, 203
DpnI	GATC	3 cut(s)	292, 348, 380
DpnII	GATC	3 cut(s)	290, 346, 378
DraIII	CACNNNGTG	1 cut(s)	593
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco130I	CCWWGG	2 cut(s)	538, 731
Eco91I	GGTNACC	1 cut(s)	479
EcoO65I	GGTNACC	1 cut(s)	479
EcoT14I	CCWWGG	2 cut(s)	538, 731
ErhI	CCWWGG	2 cut(s)	538, 731
FaeI	CATG	7 cut(s)	141, 146, 170, 183, 317, 634, 735
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	7 cut(s)	137, 142, 166, 179, 313, 630, 731
FauNDI	CATATG	1 cut(s)	653
FbaI	TGATCA	1 cut(s)	346
FokI	GGATG	2 cut(s)	555, 730
FspBI	CTAG	1 cut(s)	539
Hin1II	CATG	7 cut(s)	141, 146, 170, 183, 317, 634, 735
HinfI	GANTC	5 cut(s)	58, 263, 323, 365, 647
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	2 cut(s)	164, 401
Hpy188I	TCNGA	2 cut(s)	57, 569
Hpy188III	TCNNGA	4 cut(s)	27, 320, 599, 677
Hpy8I	GTNNAC	2 cut(s)	164, 401
Hpy99I	CGWCG	1 cut(s)	408
HpyAV	CCTTC	1 cut(s)	629
HpyCH4III	ACNGT	4 cut(s)	74, 284, 310, 516
HpyCH4IV	ACGT	2 cut(s)	385, 406
HpyCH4V	TGCA	5 cut(s)	155, 251, 313, 469, 704
HpyF3I	CTNAG	2 cut(s)	186, 203
HpySE526I	ACGT	2 cut(s)	385, 406
Hsp92II	CATG	7 cut(s)	141, 146, 170, 183, 317, 634, 735
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	290, 346, 378
LpnPI	CCDG	2 cut(s)	262, 723
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	2 cut(s)	385, 406
MaeIII	GTNAC	6 cut(s)	68, 264, 479, 510, 516, 583
MalI	GATC	3 cut(s)	292, 348, 380
MboI	GATC	3 cut(s)	290, 346, 378
MboII	GAAGA	4 cut(s)	53, 182, 560, 692
MflI	RGATCY	2 cut(s)	290, 378
MluCI	AATT	6 cut(s)	21, 439, 472, 486, 603, 663
MlyI	GAGTC	5 cut(s)	52, 272, 317, 374, 656
MnlI	CCTC	4 cut(s)	106, 140, 265, 304
MseI	TTAA	2 cut(s)	15, 437
Mva1269I	GAATGC	3 cut(s)	42, 51, 155
NcoI	CCATGG	1 cut(s)	731
NdeI	CATATG	1 cut(s)	653
NdeII	GATC	3 cut(s)	290, 346, 378
NlaIII	CATG	7 cut(s)	141, 146, 170, 183, 317, 634, 735
NlaIV	GGNNCC	2 cut(s)	292, 723
NmuCI	GTSAC	4 cut(s)	264, 479, 516, 583
NspI	RCATGY	2 cut(s)	141, 317
PctI	GAATGC	3 cut(s)	42, 51, 155
PleI	GAGTC	5 cut(s)	52, 271, 317, 373, 655
PpsI	GAGTC	5 cut(s)	52, 271, 317, 373, 655
Ppu21I	YACGTR	1 cut(s)	386
PspEI	GGTNACC	1 cut(s)	479
PspN4I	GGNNCC	2 cut(s)	292, 723
PstNI	CAGNNNCTG	1 cut(s)	514
PsuI	RGATCY	2 cut(s)	290, 378
SaqAI	TTAA	2 cut(s)	15, 437
Sau3AI	GATC	3 cut(s)	290, 346, 378
SchI	GAGTC	5 cut(s)	52, 272, 317, 374, 656
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	6 cut(s)	21, 439, 472, 486, 603, 663
SspMI	CTAG	1 cut(s)	539
StyI	CCWWGG	2 cut(s)	538, 731
TaaI	ACNGT	4 cut(s)	74, 284, 310, 516
TaiI	ACGT	2 cut(s)	388, 409
TaqI	TCGA	1 cut(s)	678
TaqII	GACCGA	1 cut(s)	461
TasI	AATT	6 cut(s)	21, 439, 472, 486, 603, 663
Tru1I	TTAA	2 cut(s)	15, 437
Tru9I	TTAA	2 cut(s)	15, 437
TseFI	GTSAC	4 cut(s)	264, 479, 516, 583
Tsp45I	GTSAC	4 cut(s)	264, 479, 516, 583
TspDTI	ATGAA	2 cut(s)	183, 491
XapI	RAATTY	3 cut(s)	439, 472, 486
XceI	RCATGY	2 cut(s)	141, 317
XmaJI	CCTAGG	1 cut(s)	538
XspI	CTAG	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.