AT5G14160

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000658
Physical Location & Seq
Forward (+)
4567333 .. 4568467
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14160.1

Sequence Viewer

Length: 1059 bp
ATGGCTTTGATTCACAAACGTCAAGCTCTCAATTCTAGGGGGGTGGATTGGTCGGAGCTTCCTGAGGATGTGATCAGATTGGTTCTGCGACGGCTGAGACTCTCGGATTTTCATCGAGCTAGGGCGGTTTGTTCCACTTGGTGTAGGGTTTGGGGAGACTGTGTCTCCAAACCTAATCAGGTTCCGTGGCTAATTCTTTTCCCTGATCCAGCACAAATCAGACGCAGTTGCATGTTGTACAATCCACAGGAAGAAGAAAACGTTTACACAATTCAAGACCTTGGTGTGGATCCTTGCCTTGCAAGTTGCGGCACCTGGCTCCTCGCTCTTTTCAGCGTACTCTACAGAAAAGGTCATTTTGCAAGCAAAGCCGAGATGATGGGATACCCTAGTACTGATAAGGCAGTTGTGTGGATAGACGAGAAAACTAAAGACTACGTAGTTGCTTGCAGCTGGGGTGGAGACAAGCATGCAGCCTTTTGCAAGAAAGGCGATTGTGAATGGCGCCAGATTCCTCCTTTGTTGGGGTGTAGTGATATTGCCCTCAAGGACCACAAACTTTACATTTACTATGAGGATGGTAGCATCGGAATCTCGGATTTGAAGTTTGTAACAAAAACTGCTCATGTTCAGCTCTATCCCTTTCGCTTCCGCTTGGGATCTTTTAGCCCTTATGATACAATTTGGACAGACTATCTTGACTGGAAGACCAACATAGTAATCACCATCTCTGGAGATTTTTTGATGGTTGGCTGCGTTCTTAAACGTCGTGACCTTTCCTGGCTTTTTCGTGGCGACCAGGCCGTGATCTTGGATCTAGGTATCACCGTGCAAGCATCCTCCGATATCCAAGGTATTACCAGAAACTCCACCTATTTCAGCGGTCTTCCATCTAGCCAAAAGGATGTCTTCGTCTTCAATCTCTCCTCCCAGAAGGTTCAACGCCTTTCGTCTTCTTCTATCTCCTCCAGACCATTCTCTAATGCTCGCTGGCTCTTCCCCACTTCTTACTTCACAATGATACTCTTTCCAAACATTTTCGTTTTTGTTCAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

352

Amino Acids

40.3

Weight (kDa)

8.69

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 17 - 55 1.4e-07 F-box domain
Beta-prop_KIB1-4 PF03478 80 - 307 2.6e-19 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 311, 504
AciI CCGC 4 cut(s) 125, 309, 652, 882
AclI AACGTT 1 cut(s) 261
AclWI GGATC 5 cut(s) 200, 284, 297, 667, 822
AcyI GRCGYC 1 cut(s) 505
AdeI CACNNNGTG 1 cut(s) 141
AfaI GTAC 3 cut(s) 239, 339, 394
AfiI CCNNNNNNNGG 2 cut(s) 286, 524
AgsI TTSAA 5 cut(s) 275, 604, 919, 941, 1052
AjnI CCWGG 3 cut(s) 314, 779, 798
AluBI AGCT 5 cut(s) 26, 58, 119, 453, 634
AluI AGCT 5 cut(s) 26, 58, 119, 453, 634
Alw26I GTCTC 4 cut(s) 91, 150, 169, 456
AlwI GGATC 5 cut(s) 200, 284, 297, 667, 822
AoxI GGCC 1 cut(s) 801
ApeKI GCWGC 3 cut(s) 450, 473, 753
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 1 cut(s) 550
AsuHPI GGTGA 2 cut(s) 715, 817
AvaII GGWCC 1 cut(s) 550
AxyI CCTNAGG 1 cut(s) 63
BaeI ACNNNNGTAYC 2 cut(s) 376, 409
BamHI GGATCC 1 cut(s) 289
BanI GGYRCC 2 cut(s) 311, 504
BbsI GAAGAC 5 cut(s) 713, 878, 901, 907, 945
BbvI GCAGC 3 cut(s) 462, 485, 740
BccI CCATC 5 cut(s) 373, 572, 734, 739, 898
BceAI ACGGC 2 cut(s) 107, 788
BciT130I CCWGG 3 cut(s) 316, 781, 800
BciVI GTATCC 1 cut(s) 377
BclI TGATCA 1 cut(s) 72
BcoDI GTCTC 4 cut(s) 91, 150, 169, 456
BfaI CTAG 5 cut(s) 36, 120, 390, 818, 894
BfmI CTRYAG 1 cut(s) 343
BfoI RGCGCY 1 cut(s) 508
BfuI GTATCC 1 cut(s) 377
BisI GCNGC 4 cut(s) 310, 451, 474, 754
BlsI GCNGC 4 cut(s) 311, 452, 475, 755
BmcAI AGTACT 1 cut(s) 394
Bme1390I CCNGG 3 cut(s) 316, 781, 800
Bme18I GGWCC 1 cut(s) 550
BmgT120I GGNCC 1 cut(s) 550
BmiI GGNNCC 5 cut(s) 183, 291, 313, 320, 506
BmrFI CCNGG 3 cut(s) 316, 781, 800
BmsI GCATC 2 cut(s) 594, 845
BpiI GAAGAC 5 cut(s) 713, 878, 901, 907, 945
BpmI CTGGAG 2 cut(s) 753, 952
BpuEI CTTGAG 1 cut(s) 530
BsaAI YACGTR 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 111
BsaHI GRCGYC 1 cut(s) 505
BsaJI CCNNGG 3 cut(s) 185, 280, 850
BsaXI ACNNNNNCTCC 4 cut(s) 147, 149, 177, 179
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 524
Bse1I ACTGG 1 cut(s) 707
Bse21I CCTNAGG 1 cut(s) 63
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 3 cut(s) 316, 781, 800
BseDI CCNNGG 3 cut(s) 185, 280, 850
BseGI GGATG 4 cut(s) 73, 583, 836, 910
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 286, 524
BseMII CTCAG 2 cut(s) 54, 86
BseNI ACTGG 1 cut(s) 707
BseRI GAGGAG 3 cut(s) 311, 916, 955
BseXI GCAGC 3 cut(s) 462, 485, 740
BseYI CCCAGC 1 cut(s) 453
BshFI GGCC 1 cut(s) 803
BshNI GGYRCC 2 cut(s) 311, 504
BslI CCNNNNNNNGG 2 cut(s) 286, 524
BsmAI GTCTC 4 cut(s) 91, 150, 169, 456
BsnI GGCC 1 cut(s) 803
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 6 cut(s) 72, 205, 289, 659, 807, 814
BspACI CCGC 4 cut(s) 125, 309, 652, 882
BspANI GGCC 1 cut(s) 803
BspCNI CTCAG 2 cut(s) 55, 87
BspLI GGNNCC 5 cut(s) 183, 291, 313, 320, 506
BspPI GGATC 5 cut(s) 200, 284, 297, 667, 822
BspQI GCTCTTC 1 cut(s) 1001
BspT107I GGYRCC 2 cut(s) 311, 504
BsrGI TGTACA 1 cut(s) 237
BsrI ACTGG 1 cut(s) 707
BssECI CCNNGG 3 cut(s) 185, 280, 850
BssMI GATC 6 cut(s) 72, 205, 289, 659, 807, 814
BssNI GRCGYC 1 cut(s) 505
BssT1I CCWWGG 2 cut(s) 280, 850
Bst2UI CCWGG 3 cut(s) 316, 781, 800
Bst4CI ACNGT 2 cut(s) 161, 829
Bst6I CTCTTC 1 cut(s) 1001
BstACI GRCGYC 1 cut(s) 505
BstAUI TGTACA 1 cut(s) 237
BstBAI YACGTR 1 cut(s) 439
BstC8I GCNNGC 6 cut(s) 364, 448, 471, 834, 988, 992
BstDEI CTNAG 2 cut(s) 63, 95
BstDSI CCRYGG 1 cut(s) 185
BstF5I GGATG 4 cut(s) 73, 583, 836, 910
BstH2I RGCGCY 1 cut(s) 508
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 6 cut(s) 75, 208, 292, 662, 810, 817
BstMAI GTCTC 4 cut(s) 91, 150, 169, 456
BstMBI GATC 6 cut(s) 72, 205, 289, 659, 807, 814
BstMWI GCNNNNNNNGC 2 cut(s) 368, 489
BstNI CCWGG 3 cut(s) 316, 781, 800
BstNSI RCATGY 2 cut(s) 235, 473
BstSCI CCNGG 3 cut(s) 314, 779, 798
BstSFI CTRYAG 1 cut(s) 343
BstSNI TACGTA 1 cut(s) 439
BstV1I GCAGC 3 cut(s) 462, 485, 740
BstV2I GAAGAC 5 cut(s) 713, 878, 901, 907, 945
BstX2I RGATCY 3 cut(s) 289, 659, 814
BstYI RGATCY 3 cut(s) 289, 659, 814
Bsu36I CCTNAGG 1 cut(s) 63
BsuI GTATCC 1 cut(s) 377
BsuRI GGCC 1 cut(s) 803
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 4 cut(s) 73, 583, 836, 910
Cac8I GCNNGC 6 cut(s) 364, 448, 471, 834, 988, 992
CfoI GCGC 1 cut(s) 507
Cfr13I GGNCC 1 cut(s) 550
CseI GACGC 1 cut(s) 231
Csp6I GTAC 3 cut(s) 238, 338, 393
CviAII CATG 3 cut(s) 232, 470, 626
CviQI GTAC 3 cut(s) 238, 338, 393
DdeI CTNAG 2 cut(s) 63, 95
DinI GGCGCC 1 cut(s) 506
DpnI GATC 6 cut(s) 74, 207, 291, 661, 809, 816
DpnII GATC 6 cut(s) 72, 205, 289, 659, 807, 814
DraIII CACNNNGTG 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 1001
EarI CTCTTC 1 cut(s) 1001
Eco105I TACGTA 1 cut(s) 439
Eco130I CCWWGG 2 cut(s) 280, 850
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 1 cut(s) 550
Eco81I CCTNAGG 1 cut(s) 63
EcoRII CCWGG 3 cut(s) 314, 779, 798
EcoRV GATATC 1 cut(s) 847
EcoT14I CCWWGG 2 cut(s) 280, 850
EgeI GGCGCC 1 cut(s) 506
EheI GGCGCC 1 cut(s) 506
ErhI CCWWGG 2 cut(s) 280, 850
FaeI CATG 3 cut(s) 235, 473, 629
FaiI YATR 6 cut(s) 233, 471, 573, 627, 675, 716
FalI AAGNNNNNCTT 2 cut(s) 893, 925
FatI CATG 3 cut(s) 231, 469, 625
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 4 cut(s) 310, 451, 474, 754
FokI GGATG 4 cut(s) 80, 590, 823, 917
Fsp4HI GCNGC 4 cut(s) 310, 451, 474, 754
FspBI CTAG 5 cut(s) 36, 120, 390, 818, 894
GlaI GCGC 1 cut(s) 506
GluI GCNGC 4 cut(s) 310, 451, 474, 754
GsaI CCCAGC 1 cut(s) 457
GsuI CTGGAG 2 cut(s) 753, 952
HaeII RGCGCY 1 cut(s) 508
HaeIII GGCC 1 cut(s) 803
HgaI GACGC 1 cut(s) 231
HhaI GCGC 1 cut(s) 507
Hin1I GRCGYC 1 cut(s) 505
Hin1II CATG 3 cut(s) 235, 473, 629
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HinfI GANTC 4 cut(s) 10, 99, 511, 591
HphI GGTGA 2 cut(s) 715, 817
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 7 cut(s) 55, 77, 106, 221, 590, 598, 844
Hpy188III TCNNGA 6 cut(s) 62, 275, 698, 732, 770, 969
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 2 cut(s) 93, 771
HpyAV CCTTC 1 cut(s) 928
HpyCH4III ACNGT 2 cut(s) 161, 829
HpyCH4IV ACGT 4 cut(s) 19, 261, 438, 766
HpyCH4V TGCA 7 cut(s) 231, 302, 362, 450, 473, 483, 832
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 489
HpyF3I CTNAG 2 cut(s) 63, 95
HpySE526I ACGT 4 cut(s) 19, 261, 438, 766
Hsp92I GRCGYC 1 cut(s) 505
Hsp92II CATG 3 cut(s) 235, 473, 629
HspAI GCGC 1 cut(s) 505
KasI GGCGCC 1 cut(s) 504
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 6 cut(s) 72, 205, 289, 659, 807, 814
LguI GCTCTTC 1 cut(s) 1001
LmnI GCTCC 2 cut(s) 55, 324
Lsp1109I GCAGC 3 cut(s) 462, 485, 740
LweI GCATC 2 cut(s) 594, 845
MaeI CTAG 5 cut(s) 36, 120, 390, 818, 894
MaeII ACGT 4 cut(s) 19, 261, 438, 766
MaeIII GTNAC 2 cut(s) 610, 770
MalI GATC 6 cut(s) 74, 207, 291, 661, 809, 816
MboI GATC 6 cut(s) 72, 205, 289, 659, 807, 814
MboII GAAGA 9 cut(s) 263, 266, 718, 878, 901, 907, 945, 948, 988
MflI RGATCY 3 cut(s) 289, 659, 814
MluCI AATT 4 cut(s) 31, 192, 270, 681
Mly113I GGCGCC 1 cut(s) 505
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 8 cut(s) 58, 332, 525, 554, 568, 850, 937, 976
MseI TTAA 2 cut(s) 762, 1057
MspA1I CMGCKG 2 cut(s) 453, 882
MspR9I CCNGG 3 cut(s) 316, 781, 800
MvaI CCWGG 3 cut(s) 316, 781, 800
MwoI GCNNNNNNNGC 2 cut(s) 368, 489
NarI GGCGCC 1 cut(s) 505
NdeII GATC 6 cut(s) 72, 205, 289, 659, 807, 814
NlaIII CATG 3 cut(s) 235, 473, 629
NlaIV GGNNCC 5 cut(s) 183, 291, 313, 320, 506
NmeAIII GCCGAG 1 cut(s) 397
NmuCI GTSAC 1 cut(s) 770
NspI RCATGY 2 cut(s) 235, 473
PaeI GCATGC 1 cut(s) 473
PciSI GCTCTTC 1 cut(s) 1001
PfeI GAWTC 3 cut(s) 10, 511, 591
PflFI GACNNNGTC 1 cut(s) 161
PkrI GCNGC 4 cut(s) 311, 452, 475, 755
PleI GAGTC 1 cut(s) 93
PluTI GGCGCC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 93
Ppu21I YACGTR 1 cut(s) 439
Psp1406I AACGTT 1 cut(s) 261
Psp6I CCWGG 3 cut(s) 314, 779, 798
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 3 cut(s) 314, 779, 798
PspN4I GGNNCC 5 cut(s) 183, 291, 313, 320, 506
PspPI GGNCC 1 cut(s) 550
PsuI RGATCY 3 cut(s) 289, 659, 814
PsyI GACNNNGTC 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 453
RsaI GTAC 3 cut(s) 239, 339, 394
RsaNI GTAC 3 cut(s) 238, 338, 393
SapI GCTCTTC 1 cut(s) 1001
SaqAI TTAA 2 cut(s) 762, 1057
SatI GCNGC 4 cut(s) 310, 451, 474, 754
Sau3AI GATC 6 cut(s) 72, 205, 289, 659, 807, 814
Sau96I GGNCC 1 cut(s) 550
ScaI AGTACT 1 cut(s) 394
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 3 cut(s) 316, 781, 800
SfaNI GCATC 2 cut(s) 594, 845
SfcI CTRYAG 1 cut(s) 343
SfoI GGCGCC 1 cut(s) 506
SinI GGWCC 1 cut(s) 550
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SnaBI TACGTA 1 cut(s) 439
SphI GCATGC 1 cut(s) 473
Sse9I AATT 4 cut(s) 31, 192, 270, 681
SsiI CCGC 4 cut(s) 125, 309, 652, 882
SspDI GGCGCC 1 cut(s) 504
SspMI CTAG 5 cut(s) 36, 120, 390, 818, 894
StyD4I CCNGG 3 cut(s) 314, 779, 798
StyI CCWWGG 2 cut(s) 280, 850
TaaI ACNGT 2 cut(s) 161, 829
TaiI ACGT 4 cut(s) 22, 264, 441, 769
TaqI TCGA 1 cut(s) 115
TasI AATT 4 cut(s) 31, 192, 270, 681
TatI WGTACW 2 cut(s) 237, 392
TauI GCSGC 1 cut(s) 312
TfiI GAWTC 3 cut(s) 10, 511, 591
Tru1I TTAA 2 cut(s) 762, 1057
Tru9I TTAA 2 cut(s) 762, 1057
TseFI GTSAC 1 cut(s) 770
TseI GCWGC 3 cut(s) 450, 473, 753
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 174
Tth111I GACNNNGTC 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 550
XceI RCATGY 2 cut(s) 235, 473
XspI CTAG 5 cut(s) 36, 120, 390, 818, 894
ZrmI AGTACT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.