Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Reverse (-)

1415113 .. 1416147

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02521.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGATTTGCAGGCAGATCATAAAAGAAAGAGAAAGAAAGAAAAGAAAAGACAACGAACGGCGGCCGTCGACGAGATGTTTCAGTTTCAGTCAAAAGATGTTGCCTCCGGCGGTCATCCTCGAAAAGAGAAACGAAGAAAAGAAAAAAGAAGAAGGCATGACTTGGGGAACAGGGAAAGTTCGAGGAAAAGGAAGGTCGACCTTATCAAAGACGATAATATATTTGATAGGTCAACTGAAGCTAGCGTCGACGACGAAGCTCGCAAGATTCACGCCATGCAGGGCCTCATGTCTGTTGTAGATGGTGAAAGTAAGCCTGAAGATCTGATAAGTTTGACCGATGCGATTGAGTACTTTAACAAGATTTACTACAAGATTGTTGAGCTGAAACAAAAGATCAGTAGTCTCAAAAAGAGAAGAAAAGCAAGGAGAAGAAAAGCAAATTGGTCTGAGCTTCCCAATGAGCTTCTACAGTCGATCTTGAAAAAGCTTATACCTTGTGAATTTGACATCGCTGGATTCAGACATATCCGAGAGTTTAAAGCCGTTTGTCAATCTTGGAGAGCCGCTGCAAAAGCATGTAGCTCATACGTGCCTTTGCCTCGTACTCCATGTCTCTTGCTTCATGGAATAACACAAAATTCCTTCTTGTTTGATCCCATTGGAAAGAAGAAGCACCTAATCAGGAATGTCCATGACTACTTTCCTAATGCCGAATGTGTTGGTTCATCATATGGGTGGATTGTCATGTTTTACGAAGACAATGAGTTGAAAGAATTTAAATCAAAAGCACATCTCTTTAACCCGATTACAAGAGGCCGCATTTCAATCCCAGGTGATCAGAACCTTCCTAACTGCCCACCTGTTAAAGCTATTATTTCATCCAATCCCTCTTTCAACAAGAACTTTGTTGTGGTAGTGCAATTCGGAGAAAGACTAGCATACTATAAACATGGAGACGAAGACAAGTCCTGGAAGATGTTGAAAGTTGACGTTAAAGATGGGTGTTGTTACAGGTGCGGATTATTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

345

Amino Acids

39.99

Weight (kDa)

9.71

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	225 - 335	3.9e-14	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	69, 198, 249
AciI	CCGC	5 cut(s)	62, 111, 567, 820, 1020
AclWI	GGATC	1 cut(s)	650
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	3 cut(s)	503, 640, 776
AcuI	CTGAAG	2 cut(s)	258, 339
AfaI	GTAC	2 cut(s)	353, 607
AgsI	TTSAA	5 cut(s)	484, 772, 828, 898, 985
AjnI	CCWGG	2 cut(s)	832, 971
AjuI	GAANNNNNNNTTGG	4 cut(s)	427, 459, 878, 910
AluBI	AGCT	8 cut(s)	242, 260, 385, 454, 466, 490, 585, 872
AluI	AGCT	8 cut(s)	242, 260, 385, 454, 466, 490, 585, 872
Alw26I	GTCTC	3 cut(s)	410, 620, 951
AlwI	GGATC	1 cut(s)	650
AoxI	GGCC	3 cut(s)	63, 283, 817
ApeKI	GCWGC	1 cut(s)	569
ApoI	RAATTY	3 cut(s)	503, 640, 776
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	317, 848
AsuNHI	GCTAGC	1 cut(s)	242
BbsI	GAAGAC	2 cut(s)	765, 969
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	2 cut(s)	296, 995
BceAI	ACGGC	3 cut(s)	50, 75, 530
BciT130I	CCWGG	2 cut(s)	834, 973
BclI	TGATCA	1 cut(s)	838
BcoDI	GTCTC	3 cut(s)	410, 620, 951
BfaI	CTAG	2 cut(s)	243, 938
BfmI	CTRYAG	1 cut(s)	470
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	4 cut(s)	63, 567, 570, 820
BlsI	GCNGC	4 cut(s)	64, 568, 571, 821
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	2 cut(s)	834, 973
BmgT120I	GGNCC	1 cut(s)	283
BmrFI	CCNGG	2 cut(s)	834, 973
BmsI	GCATC	1 cut(s)	331
BmtI	GCTAGC	1 cut(s)	246
BpiI	GAAGAC	2 cut(s)	765, 969
BsaAI	YACGTR	1 cut(s)	592
BsaJI	CCNNGG	1 cut(s)	832
BseBI	CCWGG	2 cut(s)	834, 973
BseDI	CCNNGG	1 cut(s)	832
BseGI	GGATG	2 cut(s)	115, 881
BseMII	CTCAG	1 cut(s)	441
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	556
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	3 cut(s)	65, 285, 819
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	108
BsmAI	GTCTC	3 cut(s)	410, 620, 951
BsmBI	CGTCTC	1 cut(s)	951
BsnI	GGCC	3 cut(s)	65, 285, 819
Bsp143I	GATC	6 cut(s)	16, 322, 396, 477, 655, 838
BspACI	CCGC	5 cut(s)	62, 111, 567, 820, 1020
BspANI	GGCC	3 cut(s)	65, 285, 819
BspCNI	CTCAG	1 cut(s)	442
BspOI	GCTAGC	1 cut(s)	246
BspPI	GGATC	1 cut(s)	650
BssECI	CCNNGG	1 cut(s)	832
BssMI	GATC	6 cut(s)	16, 322, 396, 477, 655, 838
Bst2UI	CCWGG	2 cut(s)	834, 973
Bst4CI	ACNGT	1 cut(s)	474
BstBAI	YACGTR	1 cut(s)	592
BstC8I	GCNNGC	3 cut(s)	12, 244, 262
BstDEI	CTNAG	1 cut(s)	450
BstF5I	GGATG	2 cut(s)	115, 881
BstKTI	GATC	6 cut(s)	19, 325, 399, 480, 658, 841
BstMAI	GTCTC	3 cut(s)	410, 620, 951
BstMBI	GATC	6 cut(s)	16, 322, 396, 477, 655, 838
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	575
BstNI	CCWGG	2 cut(s)	834, 973
BstNSI	RCATGY	1 cut(s)	582
BstSCI	CCNGG	2 cut(s)	832, 971
BstSFI	CTRYAG	1 cut(s)	470
BstV1I	GCAGC	1 cut(s)	556
BstV2I	GAAGAC	2 cut(s)	765, 969
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BstZI	CGGCCG	1 cut(s)	63
BsuRI	GGCC	3 cut(s)	65, 285, 819
BtgZI	GCGATG	1 cut(s)	496
BtsCI	GGATG	2 cut(s)	115, 881
Cac8I	GCNNGC	3 cut(s)	12, 244, 262
Cfr13I	GGNCC	1 cut(s)	283
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	352, 606
CviAII	CATG	9 cut(s)	158, 277, 289, 579, 612, 626, 695, 748, 953
CviQI	GTAC	2 cut(s)	352, 606
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	6 cut(s)	18, 324, 398, 479, 657, 840
DpnII	GATC	6 cut(s)	16, 322, 396, 477, 655, 838
DraI	TTTAAA	2 cut(s)	541, 781
EaeI	YGGCCR	1 cut(s)	63
EagI	CGGCCG	1 cut(s)	63
EclXI	CGGCCG	1 cut(s)	63
Eco52I	CGGCCG	1 cut(s)	63
Eco57I	CTGAAG	2 cut(s)	258, 339
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	832, 971
Esp3I	CGTCTC	1 cut(s)	951
FaeI	CATG	9 cut(s)	161, 280, 292, 582, 615, 629, 698, 751, 956
FatI	CATG	9 cut(s)	157, 276, 288, 578, 611, 625, 694, 747, 952
FauNDI	CATATG	1 cut(s)	733
FbaI	TGATCA	1 cut(s)	838
FblI	GTMKAC	3 cut(s)	69, 198, 249
Fnu4HI	GCNGC	4 cut(s)	63, 567, 570, 820
FokI	GGATG	2 cut(s)	102, 868
Fsp4HI	GCNGC	4 cut(s)	63, 567, 570, 820
FspBI	CTAG	2 cut(s)	243, 938
GluI	GCNGC	4 cut(s)	63, 567, 570, 820
HaeIII	GGCC	3 cut(s)	65, 285, 819
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	235
Hin1II	CATG	9 cut(s)	161, 280, 292, 582, 615, 629, 698, 751, 956
HincII	GTYRAC	5 cut(s)	70, 199, 234, 250, 991
HindII	GTYRAC	5 cut(s)	70, 199, 234, 250, 991
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	2 cut(s)	268, 519
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	317, 848
Hpy166II	GTNNAC	5 cut(s)	70, 199, 234, 250, 991
Hpy188I	TCNGA	6 cut(s)	327, 451, 524, 533, 843, 929
Hpy188III	TCNNGA	2 cut(s)	481, 685
Hpy8I	GTNNAC	5 cut(s)	70, 199, 234, 250, 991
Hpy99I	CGWCG	5 cut(s)	71, 74, 251, 254, 257
HpyAV	CCTTC	4 cut(s)	147, 187, 655, 857
HpyCH4III	ACNGT	1 cut(s)	474
HpyCH4IV	ACGT	2 cut(s)	591, 993
HpyCH4V	TGCA	4 cut(s)	10, 280, 572, 922
HpyF10VI	GCNNNNNNNGC	1 cut(s)	575
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	2 cut(s)	591, 993
Hsp92II	CATG	9 cut(s)	161, 280, 292, 582, 615, 629, 698, 751, 956
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	6 cut(s)	16, 322, 396, 477, 655, 838
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	243, 938
MaeII	ACGT	2 cut(s)	591, 993
MaeIII	GTNAC	1 cut(s)	1010
MalI	GATC	6 cut(s)	18, 324, 398, 479, 657, 840
MboI	GATC	6 cut(s)	16, 322, 396, 477, 655, 838
MboII	GAAGA	9 cut(s)	147, 162, 332, 429, 444, 682, 770, 974, 988
MflI	RGATCY	1 cut(s)	322
MluCI	AATT	5 cut(s)	442, 503, 640, 776, 923
MnlI	CCTC	7 cut(s)	115, 129, 177, 296, 612, 809, 901
MseI	TTAA	6 cut(s)	357, 540, 780, 801, 867, 996
MslI	CAYNNNNRTG	1 cut(s)	736
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	834, 973
MvaI	CCWGG	2 cut(s)	834, 973
MwoI	GCNNNNNNNGC	1 cut(s)	575
NdeI	CATATG	1 cut(s)	733
NdeII	GATC	6 cut(s)	16, 322, 396, 477, 655, 838
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	9 cut(s)	161, 280, 292, 582, 615, 629, 698, 751, 956
NspI	RCATGY	1 cut(s)	582
PfeI	GAWTC	2 cut(s)	268, 519
PfoI	TCCNGGA	1 cut(s)	971
PkrI	GCNGC	4 cut(s)	64, 568, 571, 821
Ppu21I	YACGTR	1 cut(s)	592
Psp6I	CCWGG	2 cut(s)	832, 971
PspGI	CCWGG	2 cut(s)	832, 971
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	2 cut(s)	353, 607
RsaNI	GTAC	2 cut(s)	352, 606
RseI	CAYNNNNRTG	1 cut(s)	736
SalI	GTCGAC	3 cut(s)	68, 197, 248
SaqAI	TTAA	6 cut(s)	357, 540, 780, 801, 867, 996
SatI	GCNGC	4 cut(s)	63, 567, 570, 820
Sau3AI	GATC	6 cut(s)	16, 322, 396, 477, 655, 838
Sau96I	GGNCC	1 cut(s)	283
ScaI	AGTACT	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	834, 973
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	470
SgrDI	CGTCGACG	2 cut(s)	68, 248
SmiI	ATTTAAAT	1 cut(s)	781
SmiMI	CAYNNNNRTG	1 cut(s)	736
Sse9I	AATT	5 cut(s)	442, 503, 640, 776, 923
SsiI	CCGC	5 cut(s)	62, 111, 567, 820, 1020
SspMI	CTAG	2 cut(s)	243, 938
StyD4I	CCNGG	2 cut(s)	832, 971
SwaI	ATTTAAAT	1 cut(s)	781
TaaI	ACNGT	1 cut(s)	474
TaiI	ACGT	2 cut(s)	594, 996
TaqI	TCGA	6 cut(s)	69, 121, 182, 198, 249, 476
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	5 cut(s)	442, 503, 640, 776, 923
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	3 cut(s)	65, 569, 822
TfiI	GAWTC	2 cut(s)	268, 519
Tru1I	TTAA	6 cut(s)	357, 540, 780, 801, 867, 996
Tru9I	TTAA	6 cut(s)	357, 540, 780, 801, 867, 996
TseI	GCWGC	1 cut(s)	569
TspDTI	ATGAA	3 cut(s)	614, 717, 870
XapI	RAATTY	3 cut(s)	503, 640, 776
XceI	RCATGY	1 cut(s)	582
XmiI	GTMKAC	3 cut(s)	69, 198, 249
XspI	CTAG	2 cut(s)	243, 938
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.