Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Forward (+)

61222445 .. 61225396

Gene Structure 2952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTCTTCGATTTGTGTATATATAGTTGACTTAGCCTATTTGTTCCGTCAAGCCACATATTTTGCCCTAGGGCAGACTGAAGACATGATCAAGGATCCCCATTACCTAAAACTTCGTAAAACGTTCGATGAGCTCAAAAAAATTATTGATGGAATCAACAACAGAAGGAGGTGGTCCGAGCTCCCAACTGACCTTGTAGAATTGATCTTGAAAAAGCTTATACCTTCTGAATTCGACCTCCTTGGCTTTAGAGACATCCTTCGCTCTAAACTCGTTTGTCATTCCTGGAGAAGTGTCGCAAAATCTTGTAGCTCTTACACTCCTTTACCTCAAATTACCCCATGGCTTCTGCTTCATCAGAATAACAGATCCTCCCTTTTTGATCCTGCAGAAAAAAAGGTCTACAAAATCAGGAATGTCTATGAGGTGGCATGTCATGGAGGACTTGCATTCTGTAAACATGAAGACAAATCATGGACTAAGTTCAATGATGCTCTTAGCCATCTCTATGACGATATTATGTTTTACAATGACAAGCTATTTGCATTGGCTATGGAGTCACTTGAGTATGAGACCTCTAGCTATGGCCATGTCTCTGTTTCTGTTCATCTTTTTGGGGATGTGCCTTACTCACCTCTTGTTGGAGTTCTCCAGGTGGGAAGTCATTCCAATTGGCGTTTGCATTCTGGGGGAGGCAATCCAGATGCTACCGTTTGCTATACTAGGATTTGTAATGAAGCCTTGCAGCTTAAAGGTGTACTTTTATGCATTCAATCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

260

Amino Acids

29.79

Weight (kDa)

7.61

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	108 - 187	1.3e-06	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	402
AclI	AACGTT	1 cut(s)	122
AclWI	GGATC	4 cut(s)	89, 102, 363, 377
AcoI	YGGCCR	1 cut(s)	586
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	1 cut(s)	759
AfiI	CCNNNNNNNGG	1 cut(s)	641
AgsI	TTSAA	3 cut(s)	211, 487, 773
AjnI	CCWGG	2 cut(s)	284, 651
AluBI	AGCT	7 cut(s)	133, 181, 217, 312, 538, 582, 748
AluI	AGCT	7 cut(s)	133, 181, 217, 312, 538, 582, 748
Alw21I	GWGCWC	2 cut(s)	135, 183
Alw26I	GTCTC	3 cut(s)	246, 566, 598
AlwI	GGATC	4 cut(s)	89, 102, 363, 377
AoxI	GGCC	1 cut(s)	586
ApeKI	GCWGC	1 cut(s)	745
ApoI	RAATTY	1 cut(s)	230
ArsI	GACNNNNNNTTYG	2 cut(s)	524, 556
Asp700I	GAANNNNTTC	1 cut(s)	664
AspA2I	CCTAGG	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	174
AvrII	CCTAGG	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	588
BamHI	GGATCC	1 cut(s)	94
BanII	GRGCYC	2 cut(s)	135, 183
BbsI	GAAGAC	2 cut(s)	87, 471
Bbv12I	GWGCWC	2 cut(s)	135, 183
BbvI	GCAGC	1 cut(s)	757
BccI	CCATC	2 cut(s)	143, 510
BciT130I	CCWGG	2 cut(s)	286, 653
BclI	TGATCA	1 cut(s)	87
BcoDI	GTCTC	3 cut(s)	246, 566, 598
BfaI	CTAG	3 cut(s)	68, 579, 723
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	746
BlnI	CCTAGG	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	747
Bme1390I	CCNGG	2 cut(s)	286, 653
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	286, 653
BmsI	GCATC	2 cut(s)	481, 694
BpiI	GAAGAC	2 cut(s)	87, 471
BpmI	CTGGAG	2 cut(s)	307, 635
BpuEI	CTTGAG	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	3 cut(s)	67, 241, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	641
BseBI	CCWGG	2 cut(s)	286, 653
BseDI	CCNNGG	3 cut(s)	67, 241, 341
BseGI	GGATG	2 cut(s)	255, 625
BseLI	CCNNNNNNNGG	1 cut(s)	641
BseXI	GCAGC	1 cut(s)	757
BshFI	GGCC	1 cut(s)	588
BsiHKAI	GWGCWC	2 cut(s)	135, 183
BslI	CCNNNNNNNGG	1 cut(s)	641
BsmAI	GTCTC	3 cut(s)	246, 566, 598
BsmI	GAATGC	3 cut(s)	449, 682, 768
BsnI	GGCC	1 cut(s)	588
Bso31I	GGTCTC	1 cut(s)	566
Bsp1286I	GDGCHC	2 cut(s)	135, 183
Bsp143I	GATC	5 cut(s)	87, 94, 204, 368, 382
Bsp19I	CCATGG	1 cut(s)	341
BspANI	GGCC	1 cut(s)	588
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	4 cut(s)	89, 102, 363, 377
BspTNI	GGTCTC	1 cut(s)	566
BssECI	CCNNGG	3 cut(s)	67, 241, 341
BssMI	GATC	5 cut(s)	87, 94, 204, 368, 382
BssT1I	CCWWGG	3 cut(s)	67, 241, 341
Bst2UI	CCWGG	2 cut(s)	286, 653
Bst4CI	ACNGT	1 cut(s)	712
BstDEI	CTNAG	3 cut(s)	31, 480, 497
BstDSI	CCRYGG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	255, 625
BstKTI	GATC	5 cut(s)	90, 97, 207, 371, 385
BstMAI	GTCTC	3 cut(s)	246, 566, 598
BstMBI	GATC	5 cut(s)	87, 94, 204, 368, 382
BstNI	CCWGG	2 cut(s)	286, 653
BstNSI	RCATGY	1 cut(s)	435
BstSCI	CCNGG	2 cut(s)	284, 651
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	757
BstV2I	GAAGAC	2 cut(s)	87, 471
BstX2I	RGATCY	2 cut(s)	94, 368
BstYI	RGATCY	2 cut(s)	94, 368
BsuRI	GGCC	1 cut(s)	588
BtgI	CCRYGG	1 cut(s)	341
BtsCI	GGATG	2 cut(s)	255, 625
Cfr13I	GGNCC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	758
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviAII	CATG	7 cut(s)	85, 342, 432, 437, 461, 474, 590
CviQI	GTAC	1 cut(s)	758
DdeI	CTNAG	3 cut(s)	31, 480, 497
DpnI	GATC	5 cut(s)	89, 96, 206, 370, 384
DpnII	GATC	5 cut(s)	87, 94, 204, 368, 382
EaeI	YGGCCR	1 cut(s)	586
Ecl136II	GAGCTC	2 cut(s)	133, 181
Eco130I	CCWWGG	3 cut(s)	67, 241, 341
Eco24I	GRGCYC	2 cut(s)	135, 183
Eco31I	GGTCTC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	174
Eco53kI	GAGCTC	2 cut(s)	133, 181
Eco57I	CTGAAG	1 cut(s)	99
EcoICRI	GAGCTC	2 cut(s)	133, 181
EcoRI	GAATTC	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	284, 651
EcoT14I	CCWWGG	3 cut(s)	67, 241, 341
EcoT22I	ATGCAT	1 cut(s)	770
EcoT38I	GRGCYC	2 cut(s)	135, 183
ErhI	CCWWGG	3 cut(s)	67, 241, 341
FaeI	CATG	7 cut(s)	88, 345, 435, 440, 464, 477, 593
FalI	AAGNNNNNCTT	2 cut(s)	744, 776
FatI	CATG	7 cut(s)	84, 341, 431, 436, 460, 473, 589
FbaI	TGATCA	1 cut(s)	87
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	1 cut(s)	746
FokI	GGATG	2 cut(s)	242, 632
FriOI	GRGCYC	2 cut(s)	135, 183
Fsp4HI	GCNGC	1 cut(s)	746
FspBI	CTAG	3 cut(s)	68, 579, 723
GluI	GCNGC	1 cut(s)	746
GsuI	CTGGAG	2 cut(s)	307, 635
HaeIII	GGCC	1 cut(s)	588
Hin1II	CATG	7 cut(s)	88, 345, 435, 440, 464, 477, 593
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	2 cut(s)	153, 557
HphI	GGTGA	1 cut(s)	624
Hpy166II	GTNNAC	4 cut(s)	28, 403, 458, 758
Hpy188I	TCNGA	3 cut(s)	178, 229, 360
Hpy188III	TCNNGA	3 cut(s)	208, 412, 701
Hpy8I	GTNNAC	4 cut(s)	28, 403, 458, 758
HpyAV	CCTTC	3 cut(s)	159, 234, 269
HpyCH4III	ACNGT	1 cut(s)	712
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	6 cut(s)	389, 449, 545, 682, 745, 768
HpyF3I	CTNAG	3 cut(s)	31, 480, 497
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	7 cut(s)	88, 345, 435, 440, 464, 477, 593
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	5 cut(s)	87, 94, 204, 368, 382
LmnI	GCTCC	1 cut(s)	186
LpnPI	CCDG	8 cut(s)	271, 298, 397, 399, 638, 665, 672, 714
Lsp1109I	GCAGC	1 cut(s)	757
LweI	GCATC	2 cut(s)	481, 694
MaeI	CTAG	3 cut(s)	68, 579, 723
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	558
MalI	GATC	5 cut(s)	89, 96, 206, 370, 384
MboI	GATC	5 cut(s)	87, 94, 204, 368, 382
MboII	GAAGA	2 cut(s)	92, 476
MfeI	CAATTG	1 cut(s)	670
MflI	RGATCY	2 cut(s)	94, 368
MhlI	GDGCHC	2 cut(s)	135, 183
MlsI	TGGCCA	1 cut(s)	588
MluCI	AATT	5 cut(s)	141, 200, 230, 333, 670
MluNI	TGGCCA	1 cut(s)	588
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	622
MnlI	CCTC	9 cut(s)	162, 248, 339, 382, 418, 434, 586, 645, 686
Mox20I	TGGCCA	1 cut(s)	588
Mph1103I	ATGCAT	1 cut(s)	770
MroXI	GAANNNNTTC	1 cut(s)	664
MscI	TGGCCA	1 cut(s)	588
MseI	TTAA	1 cut(s)	750
MslI	CAYNNNNRTG	1 cut(s)	507
Msp20I	TGGCCA	1 cut(s)	588
MspR9I	CCNGG	2 cut(s)	286, 653
MunI	CAATTG	1 cut(s)	670
Mva1269I	GAATGC	3 cut(s)	449, 682, 768
MvaI	CCWGG	2 cut(s)	286, 653
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	5 cut(s)	87, 94, 204, 368, 382
NlaIII	CATG	7 cut(s)	88, 345, 435, 440, 464, 477, 593
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	558
NsiI	ATGCAT	1 cut(s)	770
NspI	RCATGY	1 cut(s)	435
PctI	GAATGC	3 cut(s)	449, 682, 768
PdmI	GAANNNNTTC	1 cut(s)	664
PfeI	GAWTC	1 cut(s)	153
PfoI	TCCNGGA	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	747
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Psp124BI	GAGCTC	2 cut(s)	135, 183
Psp1406I	AACGTT	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	284, 651
PspGI	CCWGG	2 cut(s)	284, 651
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	174
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	2 cut(s)	94, 368
RsaI	GTAC	1 cut(s)	759
RsaNI	GTAC	1 cut(s)	758
RseI	CAYNNNNRTG	1 cut(s)	507
SacI	GAGCTC	2 cut(s)	135, 183
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	1 cut(s)	746
Sau3AI	GATC	5 cut(s)	87, 94, 204, 368, 382
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	2 cut(s)	286, 653
SduI	GDGCHC	2 cut(s)	135, 183
SfaNI	GCATC	2 cut(s)	481, 694
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	5 cut(s)	141, 200, 230, 333, 670
SspMI	CTAG	3 cut(s)	68, 579, 723
SstI	GAGCTC	2 cut(s)	135, 183
StyD4I	CCNGG	2 cut(s)	284, 651
StyI	CCWWGG	3 cut(s)	67, 241, 341
TaaI	ACNGT	1 cut(s)	712
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	3 cut(s)	8, 126, 234
TasI	AATT	5 cut(s)	141, 200, 230, 333, 670
TatI	WGTACW	1 cut(s)	757
TfiI	GAWTC	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TseFI	GTSAC	1 cut(s)	558
TseI	GCWGC	1 cut(s)	745
Tsp45I	GTSAC	1 cut(s)	558
TspDTI	ATGAA	4 cut(s)	344, 477, 596, 750
TspGWI	ACGGA	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	435
XmaJI	CCTAGG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	664
XspI	CTAG	3 cut(s)	68, 579, 723
Zsp2I	ATGCAT	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.