AT4G12820

F-box protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
7527048 .. 7529356
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G12820.1

Sequence Viewer

Length: 1329 bp
ATGGCGCCTCTCAACTCTCAAGCAGCTGGAGAAGAAGAATCTAATTATCAATGCCGGTTTCCAAGATTTATGCATCTCTCATGGAAGCGTCCTTATCTAACTAGGGTTTTTGACTTGGCCGTGATACAGAAGAAACAAAAGAAGGAGATGAGCGATTCCGAGGAAAAAAAATGCAACGACGATTCAAAGCAGCCTGTACTTGTCTTGGACTTGCTTAGATCGATATTGGAGCGCTTAAGCTTTGTTGATTTTCATCGAGGCAGATGCATTTCTTTAGAATGGTATTCAGCTTCGGAATCATGTCTCGCAGTAAAAAATCCAACAAGTCCATGGATCATCCTCTTTCCAAGCGAAAATGTGGAAAGCAAAAACGATTCATGTAAGTTGTACAATCCTCGTGACCATAGTTCCTACATAGTAAGAGATCTCGGGTTTGATTTAGCTAGGAGTCGTTGTTTGGCGAGTTCCGGTAGTTGGTTCCTTATGTTGGACCATAGAACTGACTTTCATATTTTGAATCTGTTTACTCGAGTGAGGATCCCTCTTCCGCCTCTAGAATCAACCGGTGATGGAAATGTTTTCAAAAGGGTTTATGAAAATGTTTCTGATGGTAGTTGTATTAAAATAGACAATGCGGTTTTGTGGGTAGATGAGAAAAGAAGAGATTATTTGGTTGTTTGGAATATTTCTAGGCTTTTTGGATATCACAAGAAAGGAGATGAAAACTATAGCTGGAAAGTGTTTAAACCTTTAAAGAAAAATGATTGTTGCATCGATATGGCGTTTAAAGAAAACAAGCTTTACGTGCTTAGTGTAACTCGGAAGGTCACTGTTTATGATTTCTCCGGTGGCGATTCTCCAGTGAAATGTGCAACTTTCCCATCTCTGCGGTTTCGGAATGGTTATAGTTATAATACTCAAGGGTGTCATTACAAGGTTGCTGTCACTTTGTCTGGAGAAGTTTTGATCATTGTAGCTAAAGTGGAACCATACCCGAGGGTGGAATGCTTCTTCGCCGTCTACAAGATGGATCATAATTCATCAGGATATGAAAGAATCTCCTTAGGAGGTGAAGCGTTGCTTTTAGATCTAGGAATAACGGTTGAGGCGAACTGTATGAAAAATTGCATATATTTTAGTAATGATCAGTTTCATAGATACAATGGGAAGAGTCTATGCGATGATTCTAACAAAAACGGTATTTGCGTCTACCATATTCGATCCCGTTATGTGGTCCAAGTGTTTGAACATCTTACTGCTTCCTCGAAGATTGCTTTTAAGGATGCTCGTTCGTTTTTTCCCATTTTTGGTGGAAAATGGTTGCTTTAA

Protein Analysis

442

Amino Acids

51.0

Weight (kDa)

8.78

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 130 - 404 1.8e-42 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 912
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 2 cut(s) 1020, 1209
AciI CCGC 3 cut(s) 548, 635, 889
AclWI GGATC 5 cut(s) 341, 532, 545, 1038, 1215
AcoI YGGCCR 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 198, 389
AfeI AGCGCT 1 cut(s) 233
AfiI CCNNNNNNNGG 5 cut(s) 474, 487, 1000, 1231, 1307
AflII CTTAAG 1 cut(s) 235
AgeI ACCGGT 1 cut(s) 563
AgsI TTSAA 4 cut(s) 186, 517, 583, 1247
AluBI AGCT 7 cut(s) 26, 240, 290, 443, 732, 799, 977
AluI AGCT 7 cut(s) 26, 240, 290, 443, 732, 799, 977
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 5 cut(s) 341, 532, 545, 1038, 1215
Ama87I CYCGRG 3 cut(s) 428, 528, 994
Aor51HI AGCGCT 1 cut(s) 233
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 2 cut(s) 23, 190
AsiGI ACCGGT 1 cut(s) 563
AspLEI GCGC 2 cut(s) 7, 234
AspS9I GGNCC 2 cut(s) 490, 1234
AsuHPI GGTGA 2 cut(s) 578, 1082
AvaI CYCGRG 3 cut(s) 428, 528, 994
AvaII GGWCC 2 cut(s) 490, 1234
AxyI CCTNAGG 1 cut(s) 1063
BamHI GGATCC 1 cut(s) 537
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 396
BbvI GCAGC 2 cut(s) 35, 202
BccI CCATC 4 cut(s) 563, 602, 889, 1021
BceAI ACGGC 2 cut(s) 104, 1001
BcgI CGANNNNNNTGC 2 cut(s) 246, 280
BclI TGATCA 2 cut(s) 966, 1144
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 5 cut(s) 102, 444, 554, 690, 1091
BfmI CTRYAG 1 cut(s) 727
BfoI RGCGCY 2 cut(s) 8, 235
BfrI CTTAAG 1 cut(s) 235
BglII AGATCT 2 cut(s) 424, 1087
BisI GCNGC 2 cut(s) 24, 191
BlsI GCNGC 2 cut(s) 25, 192
Bme18I GGWCC 2 cut(s) 490, 1234
BmeT110I CYCGRG 3 cut(s) 428, 528, 994
BmgT120I GGNCC 2 cut(s) 490, 1234
BmiI GGNNCC 4 cut(s) 6, 479, 539, 987
BmsI GCATC 4 cut(s) 82, 254, 780, 1273
BplI GAGNNNNNCTC 2 cut(s) 526, 558
BpmI CTGGAG 3 cut(s) 48, 843, 975
BpuEI CTTGAG 1 cut(s) 903
Bsa29I ATCGAT 2 cut(s) 221, 774
BsaAI YACGTR 1 cut(s) 805
BsaBI GATNNNNATC 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 159, 329, 995
BsaWI WCCGGW 3 cut(s) 467, 563, 845
BsaXI ACNNNNNCTCC 2 cut(s) 439, 469
Bsc4I CCNNNNNNNGG 5 cut(s) 474, 487, 1000, 1231, 1307
Bse118I RCCGGY 2 cut(s) 54, 563
Bse1I ACTGG 1 cut(s) 860
Bse21I CCTNAGG 1 cut(s) 1063
Bse8I GATNNNNATC 1 cut(s) 252
BseCI ATCGAT 2 cut(s) 221, 774
BseDI CCNNGG 3 cut(s) 159, 329, 995
BseGI GGATG 2 cut(s) 336, 1288
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 5 cut(s) 474, 487, 1000, 1231, 1307
BseNI ACTGG 1 cut(s) 860
BseXI GCAGC 2 cut(s) 35, 202
BshFI GGCC 1 cut(s) 119
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 563
BshVI ATCGAT 2 cut(s) 221, 774
BsiHKCI CYCGRG 3 cut(s) 428, 528, 994
BsiSI CCGG 4 cut(s) 55, 468, 564, 846
BslI CCNNNNNNNGG 5 cut(s) 474, 487, 1000, 1231, 1307
BsmAI GTCTC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 1010
BsnI GGCC 1 cut(s) 119
BsoBI CYCGRG 3 cut(s) 428, 528, 994
Bsp1407I TGTACA 1 cut(s) 387
Bsp143I GATC 9 cut(s) 218, 333, 424, 537, 966, 1030, 1087, 1144, 1220
Bsp19I CCATGG 1 cut(s) 329
BspACI CCGC 3 cut(s) 548, 635, 889
BspANI GGCC 1 cut(s) 119
BspDI ATCGAT 2 cut(s) 221, 774
BspLI GGNNCC 4 cut(s) 6, 479, 539, 987
BspPI GGATC 5 cut(s) 341, 532, 545, 1038, 1215
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 235
BsrFI RCCGGY 2 cut(s) 54, 563
BsrGI TGTACA 1 cut(s) 387
BsrI ACTGG 1 cut(s) 860
BssAI RCCGGY 2 cut(s) 54, 563
BssECI CCNNGG 3 cut(s) 159, 329, 995
BssMI GATC 9 cut(s) 218, 333, 424, 537, 966, 1030, 1087, 1144, 1220
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 329
Bst2BI CACGAG 1 cut(s) 396
Bst4CI ACNGT 4 cut(s) 832, 1102, 1115, 1199
Bst6I CTCTTC 3 cut(s) 549, 655, 1163
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 235
BstAUI TGTACA 1 cut(s) 387
BstBAI YACGTR 1 cut(s) 805
BstDEI CTNAG 3 cut(s) 215, 809, 1063
BstDSI CCRYGG 1 cut(s) 329
BstF5I GGATG 2 cut(s) 336, 1288
BstH2I RGCGCY 2 cut(s) 8, 235
BstHHI GCGC 2 cut(s) 7, 234
BstKTI GATC 9 cut(s) 221, 336, 427, 540, 969, 1033, 1090, 1147, 1223
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 9 cut(s) 218, 333, 424, 537, 966, 1030, 1087, 1144, 1220
BstMWI GCNNNNNNNGC 1 cut(s) 805
BstSFI CTRYAG 1 cut(s) 727
BstV1I GCAGC 2 cut(s) 35, 202
BstX2I RGATCY 3 cut(s) 424, 537, 1087
BstYI RGATCY 3 cut(s) 424, 537, 1087
Bsu15I ATCGAT 2 cut(s) 221, 774
Bsu36I CCTNAGG 1 cut(s) 1063
BsuRI GGCC 1 cut(s) 119
BsuTUI ATCGAT 2 cut(s) 221, 774
BtgI CCRYGG 1 cut(s) 329
BtgZI GCGATG 1 cut(s) 1194
BtsCI GGATG 2 cut(s) 336, 1288
BtsIMutI CAGTG 2 cut(s) 828, 867
CfoI GCGC 2 cut(s) 7, 234
Cfr10I RCCGGY 2 cut(s) 54, 563
Cfr13I GGNCC 2 cut(s) 490, 1234
ClaI ATCGAT 2 cut(s) 221, 774
CseI GACGC 2 cut(s) 77, 1195
Csp6I GTAC 2 cut(s) 197, 388
CspAI ACCGGT 1 cut(s) 563
CviAII CATG 4 cut(s) 81, 300, 330, 378
CviQI GTAC 2 cut(s) 197, 388
DdeI CTNAG 3 cut(s) 215, 809, 1063
DinI GGCGCC 1 cut(s) 6
DpnI GATC 9 cut(s) 220, 335, 426, 539, 968, 1032, 1089, 1146, 1222
DpnII GATC 9 cut(s) 218, 333, 424, 537, 966, 1030, 1087, 1144, 1220
DraI TTTAAA 3 cut(s) 745, 753, 787
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 3 cut(s) 549, 655, 1163
EarI CTCTTC 3 cut(s) 549, 655, 1163
EciI GGCGGA 1 cut(s) 537
Eco130I CCWWGG 1 cut(s) 329
Eco32I GATATC 1 cut(s) 704
Eco47I GGWCC 2 cut(s) 490, 1234
Eco47III AGCGCT 1 cut(s) 233
Eco81I CCTNAGG 1 cut(s) 1063
Eco88I CYCGRG 3 cut(s) 428, 528, 994
EcoRV GATATC 1 cut(s) 704
EcoT14I CCWWGG 1 cut(s) 329
EcoT22I ATGCAT 2 cut(s) 75, 269
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 329
FaeI CATG 4 cut(s) 84, 303, 333, 381
FalI AAGNNNNNCTT 2 cut(s) 1065, 1097
FatI CATG 4 cut(s) 80, 299, 329, 377
FbaI TGATCA 2 cut(s) 966, 1144
FblI GTMKAC 2 cut(s) 1020, 1209
Fnu4HI GCNGC 2 cut(s) 24, 191
FokI GGATG 2 cut(s) 323, 1295
Fsp4HI GCNGC 2 cut(s) 24, 191
FspBI CTAG 5 cut(s) 102, 444, 554, 690, 1091
GlaI GCGC 2 cut(s) 6, 233
GluI GCNGC 2 cut(s) 24, 191
GsuI CTGGAG 3 cut(s) 48, 843, 975
HaeII RGCGCY 2 cut(s) 8, 235
HaeIII GGCC 1 cut(s) 119
HapII CCGG 4 cut(s) 55, 468, 564, 846
HgaI GACGC 2 cut(s) 77, 1195
HhaI GCGC 2 cut(s) 7, 234
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 84, 303, 333, 381
Hin6I GCGC 2 cut(s) 5, 232
HinP1I GCGC 2 cut(s) 5, 232
HindIII AAGCTT 2 cut(s) 238, 797
HpaII CCGG 4 cut(s) 55, 468, 564, 846
HphI GGTGA 2 cut(s) 578, 1082
Hpy166II GTNNAC 3 cut(s) 525, 1021, 1210
Hpy188I TCNGA 5 cut(s) 160, 295, 607, 822, 897
Hpy188III TCNNGA 4 cut(s) 398, 554, 954, 1044
Hpy8I GTNNAC 3 cut(s) 525, 1021, 1210
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 136, 817
HpyCH4III ACNGT 4 cut(s) 832, 1102, 1115, 1199
HpyCH4IV ACGT 1 cut(s) 804
HpyCH4V TGCA 6 cut(s) 73, 174, 267, 771, 872, 1128
HpyF10VI GCNNNNNNNGC 1 cut(s) 805
HpyF3I CTNAG 3 cut(s) 215, 809, 1063
HpySE526I ACGT 1 cut(s) 804
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 84, 303, 333, 381
HspAI GCGC 2 cut(s) 5, 232
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 2 cut(s) 966, 1144
Kzo9I GATC 9 cut(s) 218, 333, 424, 537, 966, 1030, 1087, 1144, 1220
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 2 cut(s) 35, 202
LweI GCATC 4 cut(s) 82, 254, 780, 1273
MaeI CTAG 5 cut(s) 102, 444, 554, 690, 1091
MaeII ACGT 1 cut(s) 804
MaeIII GTNAC 4 cut(s) 398, 814, 826, 943
MalI GATC 9 cut(s) 220, 335, 426, 539, 968, 1032, 1089, 1146, 1222
MboI GATC 9 cut(s) 218, 333, 424, 537, 966, 1030, 1087, 1144, 1220
MboII GAAGA 8 cut(s) 44, 47, 142, 536, 672, 1003, 1180, 1279
MflI RGATCY 3 cut(s) 424, 537, 1087
MluCI AATT 3 cut(s) 43, 1036, 1123
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 457, 1180
MmeI TCCRAC 2 cut(s) 344, 468
Mph1103I ATGCAT 2 cut(s) 75, 269
MseI TTAA 7 cut(s) 236, 621, 744, 752, 786, 1278, 1327
MslI CAYNNNNRTG 1 cut(s) 776
MspA1I CMGCKG 1 cut(s) 26
MspCI CTTAAG 1 cut(s) 235
MspI CCGG 4 cut(s) 55, 468, 564, 846
MssI GTTTAAAC 1 cut(s) 745
Mva1269I GAATGC 1 cut(s) 1010
MwoI GCNNNNNNNGC 1 cut(s) 805
NarI GGCGCC 1 cut(s) 5
NcoI CCATGG 1 cut(s) 329
NdeII GATC 9 cut(s) 218, 333, 424, 537, 966, 1030, 1087, 1144, 1220
NlaIII CATG 4 cut(s) 84, 303, 333, 381
NlaIV GGNNCC 4 cut(s) 6, 479, 539, 987
NmuCI GTSAC 3 cut(s) 398, 826, 943
NsiI ATGCAT 2 cut(s) 75, 269
PaeR7I CTCGAG 1 cut(s) 528
PcsI WCGNNNNNNNCGW 2 cut(s) 1106, 1203
PctI GAATGC 1 cut(s) 1010
PinAI ACCGGT 1 cut(s) 563
PkrI GCNGC 2 cut(s) 25, 192
PleI GAGTC 2 cut(s) 456, 1179
PluTI GGCGCC 1 cut(s) 8
PmeI GTTTAAAC 1 cut(s) 745
PpsI GAGTC 2 cut(s) 456, 1179
Ppu21I YACGTR 1 cut(s) 805
PsiI TTATAA 1 cut(s) 912
PspN4I GGNNCC 4 cut(s) 6, 479, 539, 987
PspPI GGNCC 2 cut(s) 490, 1234
PspXI VCTCGAGB 1 cut(s) 528
PsuI RGATCY 3 cut(s) 424, 537, 1087
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 2 cut(s) 198, 389
RsaNI GTAC 2 cut(s) 197, 388
RseI CAYNNNNRTG 1 cut(s) 776
SaqAI TTAA 7 cut(s) 236, 621, 744, 752, 786, 1278, 1327
SatI GCNGC 2 cut(s) 24, 191
Sau3AI GATC 9 cut(s) 218, 333, 424, 537, 966, 1030, 1087, 1144, 1220
Sau96I GGNCC 2 cut(s) 490, 1234
SchI GAGTC 2 cut(s) 457, 1180
SfaNI GCATC 4 cut(s) 82, 254, 780, 1273
SfcI CTRYAG 1 cut(s) 727
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 528
SinI GGWCC 2 cut(s) 490, 1234
SlaI CTCGAG 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 4 cut(s) 18, 235, 528, 918
SmoI CTYRAG 4 cut(s) 18, 235, 528, 918
Sse9I AATT 3 cut(s) 43, 1036, 1123
SsiI CCGC 3 cut(s) 548, 635, 889
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 685
SspMI CTAG 5 cut(s) 102, 444, 554, 690, 1091
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 4 cut(s) 832, 1102, 1115, 1199
TaiI ACGT 1 cut(s) 807
TaqI TCGA 6 cut(s) 221, 256, 529, 774, 1219, 1265
TasI AATT 3 cut(s) 43, 1036, 1123
TatI WGTACW 2 cut(s) 196, 387
Tru1I TTAA 7 cut(s) 236, 621, 744, 752, 786, 1278, 1327
Tru9I TTAA 7 cut(s) 236, 621, 744, 752, 786, 1278, 1327
TscAI CASTG 2 cut(s) 835, 867
TseFI GTSAC 3 cut(s) 398, 826, 943
TseI GCWGC 2 cut(s) 23, 190
Tsp45I GTSAC 3 cut(s) 398, 826, 943
TspDTI ATGAA 9 cut(s) 242, 366, 497, 609, 735, 1029, 1065, 1133, 1142
TspRI CASTG 2 cut(s) 835, 867
Vha464I CTTAAG 1 cut(s) 235
VpaK11BI GGWCC 2 cut(s) 490, 1234
XbaI TCTAGA 1 cut(s) 553
XcmI CCANNNNNNNNNTGG 1 cut(s) 327
XhoI CTCGAG 1 cut(s) 528
XmiI GTMKAC 2 cut(s) 1020, 1209
XspI CTAG 5 cut(s) 102, 444, 554, 690, 1091
Zsp2I ATGCAT 2 cut(s) 75, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.