AT5G38270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000658
Physical Location & Seq
Forward (+)
15289032 .. 15290252
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38270.1

Sequence Viewer

Length: 1221 bp
ATGTATACGCCAAACGATTCGATGAGAGAAGAGATAAGCCTAAAAGTGTTTGTAAATCACGATTGGTCCAAACTTTGTCCCGATATCTTACGGTCGATCCTCGAAAGCTTGAGCTCTACTGATTTTCACCGAGCAAAAACTGTTTGCTCAGATTGGTATTCAAATTGGAAAACATGCGTGAAGCCTCTTTGTCCATGGCGGATCATGTACGTAAAAGATTCATTGATGTTGTTCAAACCCGGAGAAGACAAGATTTACAAAGGAACAAACGTTGGACTCTCCAACGACAGCTATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTAGATTCTCATCTCGGTTTCTACATTTTTAACCTGTTAACGAGCAAAAGAATTGATCTTCCATCAATGGAGTCTTCAATTCGCGGTGGAAAAGTGAGATTCGAGCAAAACCACGAGCATGGATTCAACTGGGGACACTTTGTCGAACCTTCTCGTAAGGTTACCGTGTCAAAAATAACCATCACACGGGAAAGTAGAGCTGTTCTGTGGATAGACGAGAGAACAGGAGATTTTGTGGTTGCTTGGATTTTTAACTATCGTTACTTGTTCTCATACAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAACCATTGGAATATGGAAAGCTTGAATTTAAGTTTTTTGGATTTGGCTTACAGAAACAGCAAGCTTTATATCTACATTACTAAGAGTCACATCAAAGTTGTTGATTTCTCTGGAAATGATCCCATAGAAGTAATCGATAAAAACCCGTATTGGGAACATCCGTTTCGATACTTAACCAAAAAAGGGGAATACATTAATAAGAGGAGAATAGCGATTCAGAAATCAGGAGACGTTTTGATTATCTTGAGTGTATTAGCACAAAGATCAAAAGAGAAAGTTTTATTTTACATCTTTAAGATGAATCTTGCGAGTAAAATATGGGAAAGAGTAGAATCTATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACGATAAGAGCACCGGTTCAAGATGTTGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGTCAGTGACGTATGGCCACCATATTATTCTCCTGCTGCTACAAATTGGGGTGTCTTCGATCTTGCAACAAGTATAATCAAATGGTCTAAGAAAGACAGTTTTAATAATAGATATGTTCAAACTTATTTGTTTTTTCCAGGATTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

406

Amino Acids

47.49

Weight (kDa)

8.9

Isoelectric Point (pI)

29.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 77 - 377 2.1e-47 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 411
AccIII TCCGGA 1 cut(s) 308
AciI CCGC 2 cut(s) 199, 411
AclI AACGTT 1 cut(s) 270
AclWI GGATC 3 cut(s) 91, 209, 749
AcoI YGGCCR 1 cut(s) 1085
AcsI RAATTY 1 cut(s) 661
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 4 cut(s) 315, 513, 787, 819
AgeI ACCGGT 1 cut(s) 1024
AgsI TTSAA 8 cut(s) 162, 235, 405, 454, 661, 1031, 1062, 1190
AhdI GACNNNNNGTC 1 cut(s) 467
AjnI CCWGG 1 cut(s) 1207
AluBI AGCT 7 cut(s) 108, 114, 291, 306, 527, 657, 700
AluI AGCT 7 cut(s) 108, 114, 291, 306, 527, 657, 700
Alw21I GWGCWC 2 cut(s) 116, 1024
Alw26I GTCTC 1 cut(s) 858
AlwI GGATC 3 cut(s) 91, 209, 749
Aor13HI TCCGGA 1 cut(s) 308
AoxI GGCC 1 cut(s) 1085
ApeKI GCWGC 1 cut(s) 1106
ApoI RAATTY 1 cut(s) 661
AseI ATTAAT 1 cut(s) 831
AsiGI ACCGGT 1 cut(s) 1024
AspS9I GGNCC 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 2 cut(s) 119, 1052
AsuNHI GCTAGC 1 cut(s) 302
AvaII GGWCC 1 cut(s) 66
BalI TGGCCA 1 cut(s) 1087
BanII GRGCYC 1 cut(s) 116
BauI CACGAG 1 cut(s) 440
BbsI GAAGAC 3 cut(s) 252, 393, 1117
Bbv12I GWGCWC 2 cut(s) 116, 1024
BbvI GCAGC 1 cut(s) 1093
BccI CCATC 4 cut(s) 319, 397, 515, 1037
BciT130I CCWGG 1 cut(s) 1209
BcnI CCSGG 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 858
BfaI CTAG 1 cut(s) 303
BisI GCNGC 1 cut(s) 1107
BlsI GCNGC 1 cut(s) 1108
Bme1390I CCNGG 2 cut(s) 240, 1209
Bme18I GGWCC 1 cut(s) 66
BmeRI GACNNNNNGTC 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 66
BmrFI CCNGG 2 cut(s) 240, 1209
BmrI ACTGGG 1 cut(s) 466
BmtI GCTAGC 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 466
BpiI GAAGAC 3 cut(s) 252, 393, 1117
BpuEI CTTGAG 2 cut(s) 130, 901
BpuMI CCSGG 1 cut(s) 240
Bsa29I ATCGAT 1 cut(s) 771
BsaAI YACGTR 1 cut(s) 211
BsaBI GATNNNNATC 2 cut(s) 336, 992
BsaJI CCNNGG 1 cut(s) 194
BsaWI WCCGGW 2 cut(s) 308, 1024
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bsc4I CCNNNNNNNGG 4 cut(s) 315, 513, 787, 819
Bse118I RCCGGY 1 cut(s) 1024
Bse1I ACTGG 3 cut(s) 320, 461, 635
Bse8I GATNNNNATC 2 cut(s) 336, 992
BseAI TCCGGA 1 cut(s) 308
BseBI CCWGG 1 cut(s) 1209
BseCI ATCGAT 1 cut(s) 771
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 793
BseJI GATNNNNATC 2 cut(s) 336, 992
BseLI CCNNNNNNNGG 4 cut(s) 315, 513, 787, 819
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 3 cut(s) 320, 461, 635
BseRI GAGGAG 1 cut(s) 853
BseXI GCAGC 1 cut(s) 1093
Bsh1236I CGCG 1 cut(s) 411
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 1 cut(s) 1087
BshTI ACCGGT 1 cut(s) 1024
BshVI ATCGAT 1 cut(s) 771
BsiEI CGRYCG 1 cut(s) 95
BsiHKAI GWGCWC 2 cut(s) 116, 1024
BsiSI CCGG 3 cut(s) 240, 309, 1025
BslFI GGGAC 2 cut(s) 63, 474
BslI CCNNNNNNNGG 4 cut(s) 315, 513, 787, 819
BsmAI GTCTC 1 cut(s) 858
BsmBI CGTCTC 1 cut(s) 858
BsmFI GGGAC 2 cut(s) 63, 474
BsnI GGCC 1 cut(s) 1087
Bsp1286I GDGCHC 2 cut(s) 116, 1024
Bsp13I TCCGGA 1 cut(s) 308
Bsp143I GATC 7 cut(s) 96, 201, 382, 754, 899, 993, 1129
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 2 cut(s) 199, 411
BspANI GGCC 1 cut(s) 1087
BspCNI CTCAG 1 cut(s) 161
BspDI ATCGAT 1 cut(s) 771
BspEI TCCGGA 1 cut(s) 308
BspFNI CGCG 1 cut(s) 411
BspOI GCTAGC 1 cut(s) 306
BspPI GGATC 3 cut(s) 91, 209, 749
BsrFI RCCGGY 1 cut(s) 1024
BsrI ACTGG 3 cut(s) 320, 461, 635
BssAI RCCGGY 1 cut(s) 1024
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 7 cut(s) 96, 201, 382, 754, 899, 993, 1129
BssNAI GTATAC 1 cut(s) 6
BssSI CACGAG 1 cut(s) 440
BssT1I CCWWGG 1 cut(s) 194
Bst1107I GTATAC 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 440
Bst2UI CCWGG 1 cut(s) 1209
Bst4CI ACNGT 4 cut(s) 93, 142, 493, 1169
Bst6I CTCTTC 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 304, 698
BstDEI CTNAG 4 cut(s) 148, 717, 1158, 1218
BstDSI CCRYGG 1 cut(s) 194
BstEII GGTNACC 1 cut(s) 487
BstF5I GGATG 1 cut(s) 793
BstFNI CGCG 1 cut(s) 411
BstKTI GATC 7 cut(s) 99, 204, 385, 757, 902, 996, 1132
BstMAI GTCTC 1 cut(s) 858
BstMBI GATC 7 cut(s) 96, 201, 382, 754, 899, 993, 1129
BstMCI CGRYCG 1 cut(s) 95
BstNI CCWGG 1 cut(s) 1209
BstNSI RCATGY 1 cut(s) 177
BstPI GGTNACC 1 cut(s) 487
BstSCI CCNGG 2 cut(s) 238, 1207
BstSNI TACGTA 1 cut(s) 211
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 1 cut(s) 1093
BstV2I GAAGAC 3 cut(s) 252, 393, 1117
BstXI CCANNNNNNTGG 1 cut(s) 446
BstZ17I GTATAC 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 771
BsuRI GGCC 1 cut(s) 1087
BsuTUI ATCGAT 1 cut(s) 771
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 1 cut(s) 793
BtsIMutI CAGTG 1 cut(s) 1081
Cac8I GCNNGC 2 cut(s) 304, 698
Cfr10I RCCGGY 1 cut(s) 1024
Cfr13I GGNCC 1 cut(s) 66
ClaI ATCGAT 1 cut(s) 771
Csp6I GTAC 1 cut(s) 208
CspAI ACCGGT 1 cut(s) 1024
CviAII CATG 5 cut(s) 174, 195, 205, 446, 1004
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 4 cut(s) 148, 717, 1158, 1218
DpnI GATC 7 cut(s) 98, 203, 384, 756, 901, 995, 1131
DpnII GATC 7 cut(s) 96, 201, 382, 754, 899, 993, 1129
DriI GACNNNNNGTC 1 cut(s) 467
EaeI YGGCCR 1 cut(s) 1085
Eam1104I CTCTTC 1 cut(s) 24
Eam1105I GACNNNNNGTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 24
EciI GGCGGA 1 cut(s) 214
Ecl136II GAGCTC 1 cut(s) 114
Eco105I TACGTA 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 116
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 114
Eco91I GGTNACC 1 cut(s) 487
EcoICRI GAGCTC 1 cut(s) 114
EcoO65I GGTNACC 1 cut(s) 487
EcoRII CCWGG 1 cut(s) 1207
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 194
Esp3I CGTCTC 1 cut(s) 858
FaeI CATG 5 cut(s) 177, 198, 208, 449, 1007
FaqI GGGAC 2 cut(s) 63, 474
FatI CATG 5 cut(s) 173, 194, 204, 445, 1003
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 1107
FokI GGATG 1 cut(s) 780
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 1107
FspBI CTAG 1 cut(s) 303
GluI GCNGC 1 cut(s) 1107
HaeIII GGCC 1 cut(s) 1087
HapII CCGG 3 cut(s) 240, 309, 1025
Hin1II CATG 5 cut(s) 177, 198, 208, 449, 1007
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HindIII AAGCTT 3 cut(s) 106, 655, 698
HpaI GTTAAC 1 cut(s) 366
HpaII CCGG 3 cut(s) 240, 309, 1025
HphI GGTGA 2 cut(s) 119, 1052
Hpy166II GTNNAC 2 cut(s) 6, 366
Hpy188I TCNGA 2 cut(s) 151, 855
Hpy188III TCNNGA 9 cut(s) 59, 80, 309, 322, 747, 861, 880, 1031, 1051
Hpy8I GTNNAC 2 cut(s) 6, 366
HpyAV CCTTC 1 cut(s) 486
HpyCH4III ACNGT 4 cut(s) 93, 142, 493, 1169
HpyCH4IV ACGT 4 cut(s) 210, 270, 867, 1080
HpyCH4V TGCA 1 cut(s) 1136
HpyF3I CTNAG 4 cut(s) 148, 717, 1158, 1218
HpySE526I ACGT 4 cut(s) 210, 270, 867, 1080
Hsp92II CATG 5 cut(s) 177, 198, 208, 449, 1007
Kpn2I TCCGGA 1 cut(s) 308
KspAI GTTAAC 1 cut(s) 366
Kzo9I GATC 7 cut(s) 96, 201, 382, 754, 899, 993, 1129
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 1 cut(s) 1093
MaeI CTAG 1 cut(s) 303
MaeII ACGT 4 cut(s) 210, 270, 867, 1080
MaeIII GTNAC 5 cut(s) 487, 587, 722, 1009, 1076
MalI GATC 7 cut(s) 98, 203, 384, 756, 901, 995, 1131
MboI GATC 7 cut(s) 96, 201, 382, 754, 899, 993, 1129
MboII GAAGA 5 cut(s) 41, 257, 377, 393, 1117
MhlI GDGCHC 2 cut(s) 116, 1024
MlsI TGGCCA 1 cut(s) 1087
MluCI AATT 5 cut(s) 163, 378, 405, 661, 1114
MluNI TGGCCA 1 cut(s) 1087
MlyI GAGTC 3 cut(s) 270, 407, 730
MmeI TCCRAC 2 cut(s) 253, 306
MnlI CCTC 3 cut(s) 110, 195, 831
Mox20I TGGCCA 1 cut(s) 1087
MroI TCCGGA 1 cut(s) 308
MscI TGGCCA 1 cut(s) 1087
MseI TTAA 8 cut(s) 357, 365, 579, 665, 809, 831, 930, 1173
MslI CAYNNNNRTG 1 cut(s) 444
Msp20I TGGCCA 1 cut(s) 1087
MspI CCGG 3 cut(s) 240, 309, 1025
MspR9I CCNGG 2 cut(s) 240, 1209
MvaI CCWGG 1 cut(s) 1209
MvnI CGCG 1 cut(s) 411
NciI CCSGG 1 cut(s) 240
NcoI CCATGG 1 cut(s) 194
NdeII GATC 7 cut(s) 96, 201, 382, 754, 899, 993, 1129
NheI GCTAGC 1 cut(s) 302
NlaIII CATG 5 cut(s) 177, 198, 208, 449, 1007
NmuCI GTSAC 2 cut(s) 722, 1076
NspI RCATGY 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 1077
PfoI TCCNGGA 1 cut(s) 1207
PinAI ACCGGT 1 cut(s) 1024
PkrI GCNGC 1 cut(s) 1108
PleI GAGTC 3 cut(s) 270, 406, 729
PpsI GAGTC 3 cut(s) 270, 406, 729
Ppu21I YACGTR 1 cut(s) 211
PshBI ATTAAT 1 cut(s) 831
Psp124BI GAGCTC 1 cut(s) 116
Psp1406I AACGTT 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 1207
PspEI GGTNACC 1 cut(s) 487
PspGI CCWGG 1 cut(s) 1207
PspPI GGNCC 1 cut(s) 66
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 444
SacI GAGCTC 1 cut(s) 116
SaqAI TTAA 8 cut(s) 357, 365, 579, 665, 809, 831, 930, 1173
SatI GCNGC 1 cut(s) 1107
Sau3AI GATC 7 cut(s) 96, 201, 382, 754, 899, 993, 1129
Sau96I GGNCC 1 cut(s) 66
SchI GAGTC 3 cut(s) 270, 407, 730
ScrFI CCNGG 2 cut(s) 240, 1209
SduI GDGCHC 2 cut(s) 116, 1024
SinI GGWCC 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 2 cut(s) 109, 880
SmoI CTYRAG 2 cut(s) 109, 880
SnaBI TACGTA 1 cut(s) 211
Sse9I AATT 5 cut(s) 163, 378, 405, 661, 1114
SsiI CCGC 2 cut(s) 199, 411
SspMI CTAG 1 cut(s) 303
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 2 cut(s) 238, 1207
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 4 cut(s) 93, 142, 493, 1169
TaiI ACGT 4 cut(s) 213, 273, 870, 1083
TaqI TCGA 8 cut(s) 20, 95, 102, 429, 471, 771, 802, 1128
TasI AATT 5 cut(s) 163, 378, 405, 661, 1114
Tru1I TTAA 8 cut(s) 357, 365, 579, 665, 809, 831, 930, 1173
Tru9I TTAA 8 cut(s) 357, 365, 579, 665, 809, 831, 930, 1173
TscAI CASTG 1 cut(s) 1081
TseFI GTSAC 2 cut(s) 722, 1076
TseI GCWGC 1 cut(s) 1106
Tsp45I GTSAC 2 cut(s) 722, 1076
TspDTI ATGAA 2 cut(s) 210, 950
TspGWI ACGGA 1 cut(s) 786
TspRI CASTG 1 cut(s) 1081
VpaK11BI GGWCC 1 cut(s) 66
VspI ATTAAT 1 cut(s) 831
XapI RAATTY 1 cut(s) 661
XceI RCATGY 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.