Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Reverse (-)

9521704 .. 9523299

Gene Structure 1596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22826

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGTTGAGCTGAAACAAATGATTGATCACACATATTCAGCTGTGATGAGGACATCCAAGAGTAGATGGTCTGAACTGCCAACTGACATTGGTGAGTCGATATTGAAAAAGTTTGTACCGCCCGTCTTCGACGACATCCTTATTTTCAAACACATTCTTAGCTTTAGAGCTGTTTACCACACATGGAGAACTGCTGCAAAAGCGTTTTGTTCGTACACTGGGTTTCCTCAAACTCCATGGCTCTTGGTTCATACTCGTTGCAAATCGTCCATTGTTGATCCAGAACAGAAAAAGGTTTACGAGATTCAAAATGTATATGGCAATCATCATCATGATTTTTCTGATGTAAGGTGTAAGGGATCATCACATGGTTGGATGGTTGTCTTTCACAAGAACTGGGATGTGAGAGAATCTTTAGCATATGTTGTTAATCCGATTACTAGAGCTAGGACTGAAATCCCAGGTAAGGCCACTCTTTCTGACTCTGAATGGCATTCAGTTGAAATTACTAAAGTTGTTTTGTCCTCCAATCCATCTAGCAATAACTTTTCTGTCATAGTGGCATATTATACACAAACAAGATTTGTTACTGGAGCACTTGCATTCTGCAAGTATGGAGACACATCTTGGAGTAAGCTGGACTATCCACACAAGTATATCTTTCATGACATACTGTTTCACCATGATCACTTATTCGCATTGACCAAGAAACAGTCACTATATGTGTGGGATTTCACAGAATCCTACCTGAAAATGATCTTTAATATTGCTGACACCACTCCTCTGAGATCAGTTGGTCGTAGCTATTTGGTGGAGTCAATGGGTGAAGTTCTACGTGTGGTCAGAGGTGGTGAGAATACAAACAGTGCACACTTTCTGGTGGAAAAGCTGAATGTGAAGGATAAGAAGTGGGAGAAAGTGCAGAATTTGGGTGACCAGAGTTTATTTTTGTTTCATGATCAGTCAATGTCTTTGCCCAAGACATGTTTCTTAGGATCTGAAGACAATTCAATCTACTTTCTACAAGGTGGATGGCTTGCTAGAGGTGTGATTAACAGATACAATCTTGAAACCACTGAGGTACGTAGGATAAACTCATTGTCTGACCTAATTGGCAAAGAGTTAAGTTCTGAAGAGTTAGAATTTCACTTTTTCCCACCTGTTTGGGTGGTTCCTAGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

394

Amino Acids

45.57

Weight (kDa)

8.15

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	94 - 342	1.3e-49	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	3 cut(s)	272, 367, 1003
AcsI	RAATTY	2 cut(s)	925, 1142
AcuI	CTGAAG	2 cut(s)	1020, 1152
AfaI	GTAC	3 cut(s)	117, 215, 1083
AfiI	CCNNNNNNNGG	1 cut(s)	466
AflIII	ACRYGT	2 cut(s)	835, 983
AgsI	TTSAA	6 cut(s)	106, 148, 308, 503, 1011, 1070
AjnI	CCWGG	1 cut(s)	460
AjuI	GAANNNNNNNTTGG	2 cut(s)	971, 1003
AluBI	AGCT	8 cut(s)	10, 41, 162, 170, 446, 637, 804, 889
AluI	AGCT	8 cut(s)	10, 41, 162, 170, 446, 637, 804, 889
Alw21I	GWGCWC	2 cut(s)	598, 871
Alw26I	GTCTC	1 cut(s)	612
Alw44I	GTGCAC	1 cut(s)	867
AlwI	GGATC	3 cut(s)	272, 367, 1003
AoxI	GGCC	1 cut(s)	468
ApaLI	GTGCAC	1 cut(s)	867
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	2 cut(s)	925, 1142
AsuHPI	GGTGA	5 cut(s)	104, 671, 836, 863, 944
BaeGI	GKGCMC	1 cut(s)	871
BbsI	GAAGAC	2 cut(s)	118, 1008
Bbv12I	GWGCWC	2 cut(s)	598, 871
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	4 cut(s)	60, 370, 541, 1026
BciT130I	CCWGG	1 cut(s)	462
BclI	TGATCA	3 cut(s)	25, 685, 958
BcoDI	GTCTC	1 cut(s)	612
BfaI	CTAG	5 cut(s)	441, 447, 537, 1041, 1176
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	462
BmiI	GGNNCC	1 cut(s)	1173
BmrFI	CCNGG	1 cut(s)	462
BmrI	ACTGGG	2 cut(s)	228, 406
BmuI	ACTGGG	2 cut(s)	228, 406
BpiI	GAAGAC	2 cut(s)	118, 1008
BpmI	CTGGAG	1 cut(s)	612
BsaAI	YACGTR	2 cut(s)	836, 1085
BsaJI	CCNNGG	2 cut(s)	236, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	3 cut(s)	223, 401, 595
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	2 cut(s)	236, 460
BseGI	GGATG	5 cut(s)	53, 135, 381, 406, 1037
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMII	CTCAG	2 cut(s)	776, 1068
BseNI	ACTGG	3 cut(s)	223, 401, 595
BseRI	GAGGAG	1 cut(s)	771
BseSI	GKGCMC	1 cut(s)	871
BseXI	GCAGC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	941
BshFI	GGCC	1 cut(s)	470
BsiHKAI	GWGCWC	2 cut(s)	598, 871
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	612
BsmI	GAATGC	2 cut(s)	493, 602
BsnI	GGCC	1 cut(s)	470
Bsp1286I	GDGCHC	2 cut(s)	598, 871
Bsp143I	GATC	8 cut(s)	25, 277, 359, 685, 756, 788, 958, 995
Bsp19I	CCATGG	1 cut(s)	236
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	2 cut(s)	777, 1069
BspHI	TCATGA	3 cut(s)	331, 664, 955
BspLI	GGNNCC	1 cut(s)	1173
BspPI	GGATC	3 cut(s)	272, 367, 1003
BsrI	ACTGG	3 cut(s)	223, 401, 595
BssECI	CCNNGG	2 cut(s)	236, 460
BssMI	GATC	8 cut(s)	25, 277, 359, 685, 756, 788, 958, 995
BssT1I	CCWWGG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	3 cut(s)	675, 714, 866
Bst6I	CTCTTC	1 cut(s)	1128
BstBAI	YACGTR	2 cut(s)	836, 1085
BstC8I	GCNNGC	1 cut(s)	1038
BstDEI	CTNAG	4 cut(s)	158, 785, 991, 1077
BstDSI	CCRYGG	1 cut(s)	236
BstEII	GGTNACC	1 cut(s)	932
BstF5I	GGATG	5 cut(s)	53, 135, 381, 406, 1037
BstKTI	GATC	8 cut(s)	28, 280, 362, 688, 759, 791, 961, 998
BstMAI	GTCTC	1 cut(s)	612
BstMBI	GATC	8 cut(s)	25, 277, 359, 685, 756, 788, 958, 995
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	462
BstNSI	RCATGY	1 cut(s)	987
BstPI	GGTNACC	1 cut(s)	932
BstSCI	CCNGG	1 cut(s)	460
BstSLI	GKGCMC	1 cut(s)	871
BstSNI	TACGTA	1 cut(s)	1085
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	2 cut(s)	118, 1008
BstX2I	RGATCY	1 cut(s)	995
BstXI	CCANNNNNNTGG	1 cut(s)	1164
BstYI	RGATCY	1 cut(s)	995
BsuRI	GGCC	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	236
BtsCI	GGATG	5 cut(s)	53, 135, 381, 406, 1037
BtsIMutI	CAGTG	3 cut(s)	216, 871, 1074
Cac8I	GCNNGC	1 cut(s)	1038
CciI	TCATGA	3 cut(s)	331, 664, 955
Csp6I	GTAC	3 cut(s)	116, 214, 1082
CviAII	CATG	8 cut(s)	183, 237, 332, 368, 665, 683, 956, 984
CviQI	GTAC	3 cut(s)	116, 214, 1082
DdeI	CTNAG	4 cut(s)	158, 785, 991, 1077
DpnI	GATC	8 cut(s)	27, 279, 361, 687, 758, 790, 960, 997
DpnII	GATC	8 cut(s)	25, 277, 359, 685, 756, 788, 958, 995
Eam1104I	CTCTTC	1 cut(s)	1128
EarI	CTCTTC	1 cut(s)	1128
Eco105I	TACGTA	1 cut(s)	1085
Eco130I	CCWWGG	1 cut(s)	236
Eco57I	CTGAAG	2 cut(s)	1020, 1152
Eco91I	GGTNACC	1 cut(s)	932
EcoO65I	GGTNACC	1 cut(s)	932
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	236
FaeI	CATG	8 cut(s)	186, 240, 335, 371, 668, 686, 959, 987
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FatI	CATG	8 cut(s)	182, 236, 331, 367, 664, 682, 955, 983
FauNDI	CATATG	1 cut(s)	421
FbaI	TGATCA	3 cut(s)	25, 685, 958
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	5 cut(s)	40, 122, 388, 413, 1044
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	5 cut(s)	441, 447, 537, 1041, 1176
GluI	GCNGC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	1 cut(s)	470
Hin1II	CATG	8 cut(s)	186, 240, 335, 371, 668, 686, 959, 987
HinfI	GANTC	6 cut(s)	95, 304, 410, 482, 740, 815
HphI	GGTGA	5 cut(s)	104, 671, 836, 863, 944
Hpy166II	GTNNAC	4 cut(s)	175, 216, 298, 869
Hpy188III	TCNNGA	5 cut(s)	281, 332, 665, 956, 1067
Hpy8I	GTNNAC	4 cut(s)	175, 216, 298, 869
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	892
HpyCH4III	ACNGT	3 cut(s)	675, 714, 866
HpyCH4IV	ACGT	2 cut(s)	835, 1084
HpyCH4V	TGCA	6 cut(s)	197, 261, 602, 609, 869, 922
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	4 cut(s)	158, 785, 991, 1077
HpySE526I	ACGT	2 cut(s)	835, 1084
Hsp92II	CATG	8 cut(s)	186, 240, 335, 371, 668, 686, 959, 987
Ksp22I	TGATCA	3 cut(s)	25, 685, 958
Kzo9I	GATC	8 cut(s)	25, 277, 359, 685, 756, 788, 958, 995
LmnI	GCTCC	1 cut(s)	593
Lsp1109I	GCAGC	1 cut(s)	181
MaeI	CTAG	5 cut(s)	441, 447, 537, 1041, 1176
MaeII	ACGT	2 cut(s)	835, 1084
MaeIII	GTNAC	3 cut(s)	586, 714, 932
MalI	GATC	8 cut(s)	27, 279, 361, 687, 758, 790, 960, 997
MboI	GATC	8 cut(s)	25, 277, 359, 685, 756, 788, 958, 995
MboII	GAAGA	3 cut(s)	118, 1013, 1145
MflI	RGATCY	1 cut(s)	995
MhlI	GDGCHC	2 cut(s)	598, 871
MluCI	AATT	5 cut(s)	504, 925, 1006, 1110, 1142
MlyI	GAGTC	3 cut(s)	104, 476, 824
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	7 cut(s)	42, 237, 535, 792, 839, 1037, 1072
MseI	TTAA	4 cut(s)	429, 762, 1053, 1124
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	462
Mva1269I	GAATGC	2 cut(s)	493, 602
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	200
NcoI	CCATGG	1 cut(s)	236
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	8 cut(s)	25, 277, 359, 685, 756, 788, 958, 995
NlaIII	CATG	8 cut(s)	186, 240, 335, 371, 668, 686, 959, 987
NlaIV	GGNNCC	1 cut(s)	1173
NmuCI	GTSAC	2 cut(s)	714, 932
NspI	RCATGY	1 cut(s)	987
PagI	TCATGA	3 cut(s)	331, 664, 955
PciI	ACATGT	1 cut(s)	983
PctI	GAATGC	2 cut(s)	493, 602
PfeI	GAWTC	3 cut(s)	304, 410, 740
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	3 cut(s)	103, 476, 823
PpsI	GAGTC	3 cut(s)	103, 476, 823
Ppu21I	YACGTR	2 cut(s)	836, 1085
PscI	ACATGT	1 cut(s)	983
Psp6I	CCWGG	1 cut(s)	460
PspEI	GGTNACC	1 cut(s)	932
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	1173
PsuI	RGATCY	1 cut(s)	995
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	3 cut(s)	117, 215, 1083
RsaNI	GTAC	3 cut(s)	116, 214, 1082
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	4 cut(s)	429, 762, 1053, 1124
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	8 cut(s)	25, 277, 359, 685, 756, 788, 958, 995
SchI	GAGTC	3 cut(s)	104, 476, 824
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	2 cut(s)	598, 871
SmiMI	CAYNNNNRTG	1 cut(s)	330
SnaBI	TACGTA	1 cut(s)	1085
Sse9I	AATT	5 cut(s)	504, 925, 1006, 1110, 1142
SsiI	CCGC	1 cut(s)	119
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	5 cut(s)	441, 447, 537, 1041, 1176
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	3 cut(s)	675, 714, 866
TaiI	ACGT	2 cut(s)	838, 1087
TaqI	TCGA	2 cut(s)	98, 129
TasI	AATT	5 cut(s)	504, 925, 1006, 1110, 1142
TfiI	GAWTC	3 cut(s)	304, 410, 740
Tru1I	TTAA	4 cut(s)	429, 762, 1053, 1124
Tru9I	TTAA	4 cut(s)	429, 762, 1053, 1124
TscAI	CASTG	3 cut(s)	223, 871, 1081
TseFI	GTSAC	2 cut(s)	714, 932
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	2 cut(s)	714, 932
TspDTI	ATGAA	3 cut(s)	239, 653, 944
TspRI	CASTG	3 cut(s)	223, 871, 1081
VneI	GTGCAC	1 cut(s)	867
XapI	RAATTY	2 cut(s)	925, 1142
XceI	RCATGY	1 cut(s)	987
XspI	CTAG	5 cut(s)	441, 447, 537, 1041, 1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.