Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Reverse (-)

935139 .. 936320

Gene Structure 1182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAGCGATTCCAACAAAAAGACATGCAACGATGCGAAGCAGCCAATACTTGTCCTGGACTTGGTTAGATTGGTCTTGGAACGCTTGAGCTTTGTAGATTTTCATCGAGCTAGATGTGTTTCTTCAGTATGGTATTCCGCTTCGAAATCATGCATTGGAGGAACAAATCCAACAGCTCCATGGATCATCCTCTTTCCAAACGAACATGTGAAAACCAACAACGATTCGTGTAAGTCAATTGATCCTCGTGATCATAGTTCATACACAATAAGAGATCTCGGGTTTGATATGGTTAGGAGTCGTTGTTTGGCAAGTTCCGGTAGCTGGTTCCTTATGTTAGACCATAAAACTGATTTTCATCTCTTGAATCTATTTACTCGAGAGAGAATTCCTCTTCCGTCTCTGGAATCAATTGATGGATTGCAGATGAAGTTTGTGAGAACCGGTGACTGTGGTTTCGAGATGTCTATGTATTACAAAGCTCATGGACTTATTTCTTATGGTAAAAACAGCGATCTTAGAATAAGCGATGCGGTTTTGTGGGTAGATGAAAAAAACGGAGATTACTTTGTTGTTTGGTTTCATCATAGCACTTTTGCATATCACAAGAAAGGAGGTGACAATAATAGCTGGAAAGTGTTTCAACCTTCAAAGCATCAAGGATGCATCAACATGGTGTTTAAAGAAGGCAAACTTTACGTGCTTAATCCAGCTCGAAATATTTCTGTGTTTGATTTCTCCGGTGGTCATTCTCCAGTGGAATATGCAACTCCCCCATCTCCGAATGATGATTACTATGTCAGGAATCTTGCTGTGACATTGTCTGGAGAAGTTTTGATCATTTCAAGCAATCCAAAGAAATGCTTCGTCAAACTCTACAAGATAGATCCTAAATCATCAGAATGGAGATTAATCAAGTCTATAGGAGACGAAGCATTGATTTTGGACCTAGGAATCACGGTTGCAGCCAAAGATGGAGTTATGAGAAATTGCATATATTTTAGTCATCATGAGTTACTTAGATATAAAGGGGTTAGTCTATGCAATGATGATAAGTACGGGATTTGCATCTACCATATTAAAACCAAGAAGAAGGTCCAAGAGTTTGAACATCTTACTACTTCATCGCCAATACTATTTAAGGATGCTCGTTGGTTTTTTCCCACTTTTGGTGGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

393

Amino Acids

44.84

Weight (kDa)

8.71

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	17 - 51	7.5e-06	F-box domain
Beta-prop_KIB1-4	PF03478	83 - 358	1.4e-52	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	138, 533
AclWI	GGATC	3 cut(s)	191, 236, 881
AcsI	RAATTY	1 cut(s)	387
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	1058
AfiI	CCNNNNNNNGG	3 cut(s)	61, 324, 1169
AflIII	ACRYGT	1 cut(s)	205
AgeI	ACCGGT	1 cut(s)	443
AgsI	TTSAA	5 cut(s)	367, 644, 651, 846, 1109
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	7 cut(s)	90, 110, 176, 324, 482, 630, 713
AluI	AGCT	7 cut(s)	90, 110, 176, 324, 482, 630, 713
Alw26I	GTCTC	2 cut(s)	405, 921
AlwI	GGATC	3 cut(s)	191, 236, 881
Ama87I	CYCGRG	2 cut(s)	278, 378
ApeKI	GCWGC	2 cut(s)	40, 965
ApoI	RAATTY	1 cut(s)	387
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AseI	ATTAAT	1 cut(s)	911
AsiGI	ACCGGT	1 cut(s)	443
Asp700I	GAANNNNTTC	2 cut(s)	721, 863
AspA2I	CCTAGG	1 cut(s)	949
AspS9I	GGNCC	2 cut(s)	946, 1096
AsuHPI	GGTGA	2 cut(s)	458, 629
AsuII	TTCGAA	1 cut(s)	143
AvaI	CYCGRG	2 cut(s)	278, 378
AvaII	GGWCC	2 cut(s)	946, 1096
AvrII	CCTAGG	1 cut(s)	949
BauI	CACGAG	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	52, 977
BccI	CCATC	3 cut(s)	410, 784, 968
BciT130I	CCWGG	1 cut(s)	56
BclI	TGATCA	2 cut(s)	250, 837
BcoDI	GTCTC	2 cut(s)	405, 921
BfaI	CTAG	3 cut(s)	111, 950, 1180
BfmI	CTRYAG	1 cut(s)	921
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	2 cut(s)	41, 966
BlnI	CCTAGG	1 cut(s)	949
BlsI	GCNGC	2 cut(s)	42, 967
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	2 cut(s)	946, 1096
BmeT110I	CYCGRG	2 cut(s)	278, 378
BmgT120I	GGNCC	2 cut(s)	946, 1096
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	7 cut(s)	22, 520, 653, 664, 675, 1077, 1135
BplI	GAGNNNNNCTC	2 cut(s)	376, 408
BpmI	CTGGAG	2 cut(s)	738, 846
Bpu14I	TTCGAA	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	700
BsaBI	GATNNNNATC	3 cut(s)	102, 357, 1067
BsaJI	CCNNGG	2 cut(s)	179, 949
BsaWI	WCCGGW	3 cut(s)	317, 443, 740
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 324, 1169
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	755
Bse3DI	GCAATG	1 cut(s)	1051
Bse8I	GATNNNNATC	3 cut(s)	102, 357, 1067
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	179, 949
BseGI	GGATG	3 cut(s)	186, 668, 1150
BseJI	GATNNNNATC	3 cut(s)	102, 357, 1067
BseLI	CCNNNNNNNGG	3 cut(s)	61, 324, 1169
BseMI	GCAATG	1 cut(s)	1051
BseNI	ACTGG	1 cut(s)	755
BseXI	GCAGC	2 cut(s)	52, 977
BshTI	ACCGGT	1 cut(s)	443
BsiHKCI	CYCGRG	2 cut(s)	278, 378
BsiSI	CCGG	3 cut(s)	318, 444, 741
BslI	CCNNNNNNNGG	3 cut(s)	61, 324, 1169
BsmAI	GTCTC	2 cut(s)	405, 921
BsmBI	CGTCTC	2 cut(s)	405, 921
BsoBI	CYCGRG	2 cut(s)	278, 378
Bsp119I	TTCGAA	1 cut(s)	143
Bsp143I	GATC	7 cut(s)	183, 241, 250, 274, 514, 837, 886
Bsp19I	CCATGG	1 cut(s)	179
BspACI	CCGC	2 cut(s)	138, 533
BspHI	TCATGA	1 cut(s)	1009
BspLI	GGNNCC	1 cut(s)	329
BspPI	GGATC	3 cut(s)	191, 236, 881
BspT104I	TTCGAA	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	1051
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	755
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	179, 949
BssMI	GATC	7 cut(s)	183, 241, 250, 274, 514, 837, 886
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	179, 949
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	452, 961
Bst6I	CTCTTC	1 cut(s)	399
BstBAI	YACGTR	1 cut(s)	700
BstBI	TTCGAA	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	518, 1019
BstDSI	CCRYGG	1 cut(s)	179
BstF5I	GGATG	3 cut(s)	186, 668, 1150
BstKTI	GATC	7 cut(s)	186, 244, 253, 277, 517, 840, 889
BstMAI	GTCTC	2 cut(s)	405, 921
BstMBI	GATC	7 cut(s)	183, 241, 250, 274, 514, 837, 886
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	2 cut(s)	27, 209
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	921
BstV1I	GCAGC	2 cut(s)	52, 977
BstX2I	RGATCY	2 cut(s)	274, 886
BstYI	RGATCY	2 cut(s)	274, 886
BtgI	CCRYGG	1 cut(s)	179
BtgZI	GCGATG	2 cut(s)	543, 1110
BtsCI	GGATG	3 cut(s)	186, 668, 1150
BtsIMutI	CAGTG	1 cut(s)	762
CciI	TCATGA	1 cut(s)	1009
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	946, 1096
Csp6I	GTAC	1 cut(s)	1057
CspAI	ACCGGT	1 cut(s)	443
CviAII	CATG	7 cut(s)	24, 150, 180, 206, 485, 673, 1010
CviJI	RGCY	9 cut(s)	43, 90, 110, 176, 324, 482, 630, 713, 968
CviKI_1	RGCY	9 cut(s)	43, 90, 110, 176, 324, 482, 630, 713, 968
CviQI	GTAC	1 cut(s)	1057
DdeI	CTNAG	2 cut(s)	518, 1019
DpnI	GATC	7 cut(s)	185, 243, 252, 276, 516, 839, 888
DpnII	GATC	7 cut(s)	183, 241, 250, 274, 514, 837, 886
DraI	TTTAAA	1 cut(s)	682
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco130I	CCWWGG	2 cut(s)	179, 949
Eco47I	GGWCC	2 cut(s)	946, 1096
Eco57I	CTGAAG	1 cut(s)	108
Eco88I	CYCGRG	2 cut(s)	278, 378
EcoRI	GAATTC	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	2 cut(s)	179, 949
EcoT22I	ATGCAT	2 cut(s)	155, 668
ErhI	CCWWGG	2 cut(s)	179, 949
Esp3I	CGTCTC	2 cut(s)	405, 921
FaeI	CATG	7 cut(s)	27, 153, 183, 209, 488, 676, 1013
FalI	AAGNNNNNCTT	4 cut(s)	678, 710, 848, 880
FatI	CATG	7 cut(s)	23, 149, 179, 205, 484, 672, 1009
FbaI	TGATCA	2 cut(s)	250, 837
Fnu4HI	GCNGC	2 cut(s)	41, 966
FokI	GGATG	3 cut(s)	173, 675, 1157
Fsp4HI	GCNGC	2 cut(s)	41, 966
FspBI	CTAG	3 cut(s)	111, 950, 1180
GluI	GCNGC	2 cut(s)	41, 966
GsuI	CTGGAG	2 cut(s)	738, 846
HapII	CCGG	3 cut(s)	318, 444, 741
Hin1II	CATG	7 cut(s)	27, 153, 183, 209, 488, 676, 1013
HinfI	GANTC	7 cut(s)	8, 224, 298, 367, 407, 805, 954
HpaII	CCGG	3 cut(s)	318, 444, 741
HphI	GGTGA	2 cut(s)	458, 629
Hpy188I	TCNGA	2 cut(s)	783, 901
Hpy188III	TCNNGA	8 cut(s)	248, 364, 380, 404, 460, 802, 825, 1010
HpyAV	CCTTC	3 cut(s)	657, 680, 1087
HpyCH4III	ACNGT	2 cut(s)	452, 961
HpyCH4IV	ACGT	1 cut(s)	699
HpyF3I	CTNAG	2 cut(s)	518, 1019
HpySE526I	ACGT	1 cut(s)	699
Hsp92II	CATG	7 cut(s)	27, 153, 183, 209, 488, 676, 1013
Ksp22I	TGATCA	2 cut(s)	250, 837
Kzo9I	GATC	7 cut(s)	183, 241, 250, 274, 514, 837, 886
LmnI	GCTCC	1 cut(s)	181
Lsp1109I	GCAGC	2 cut(s)	52, 977
LweI	GCATC	7 cut(s)	22, 520, 653, 664, 675, 1077, 1135
MaeI	CTAG	3 cut(s)	111, 950, 1180
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	4 cut(s)	446, 617, 814, 1014
MalI	GATC	7 cut(s)	185, 243, 252, 276, 516, 839, 888
MboI	GATC	7 cut(s)	183, 241, 250, 274, 514, 837, 886
MboII	GAAGA	3 cut(s)	114, 386, 1102
MfeI	CAATTG	2 cut(s)	237, 411
MflI	RGATCY	2 cut(s)	274, 886
MluCI	AATT	4 cut(s)	237, 387, 411, 988
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	2 cut(s)	36, 194
MnlI	CCTC	5 cut(s)	152, 200, 255, 402, 608
Mph1103I	ATGCAT	2 cut(s)	155, 668
MroXI	GAANNNNTTC	2 cut(s)	721, 863
MseI	TTAA	5 cut(s)	681, 705, 911, 1080, 1140
MslI	CAYNNNNRTG	2 cut(s)	671, 901
MspI	CCGG	3 cut(s)	318, 444, 741
MspR9I	CCNGG	1 cut(s)	56
MunI	CAATTG	2 cut(s)	237, 411
MvaI	CCWGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	179
NdeII	GATC	7 cut(s)	183, 241, 250, 274, 514, 837, 886
NlaIII	CATG	7 cut(s)	27, 153, 183, 209, 488, 676, 1013
NlaIV	GGNNCC	1 cut(s)	329
NmuCI	GTSAC	3 cut(s)	446, 617, 814
NsiI	ATGCAT	2 cut(s)	155, 668
NspI	RCATGY	2 cut(s)	27, 209
NspV	TTCGAA	1 cut(s)	143
PaeR7I	CTCGAG	1 cut(s)	378
PagI	TCATGA	1 cut(s)	1009
PciI	ACATGT	1 cut(s)	205
PdmI	GAANNNNTTC	2 cut(s)	721, 863
PfeI	GAWTC	6 cut(s)	8, 224, 367, 407, 805, 954
PflFI	GACNNNGTC	1 cut(s)	820
PfoI	TCCNGGA	1 cut(s)	54
PinAI	ACCGGT	1 cut(s)	443
PkrI	GCNGC	2 cut(s)	42, 967
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
Ppu21I	YACGTR	1 cut(s)	700
PscI	ACATGT	1 cut(s)	205
PshBI	ATTAAT	1 cut(s)	911
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	2 cut(s)	946, 1096
PsuI	RGATCY	2 cut(s)	274, 886
PsyI	GACNNNGTC	1 cut(s)	820
RsaI	GTAC	1 cut(s)	1058
RsaNI	GTAC	1 cut(s)	1057
RseI	CAYNNNNRTG	2 cut(s)	671, 901
SaqAI	TTAA	5 cut(s)	681, 705, 911, 1080, 1140
SatI	GCNGC	2 cut(s)	41, 966
Sau3AI	GATC	7 cut(s)	183, 241, 250, 274, 514, 837, 886
Sau96I	GGNCC	2 cut(s)	946, 1096
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	56
SfaNI	GCATC	7 cut(s)	22, 520, 653, 664, 675, 1077, 1135
SfcI	CTRYAG	1 cut(s)	921
Sfr274I	CTCGAG	1 cut(s)	378
SfuI	TTCGAA	1 cut(s)	143
SinI	GGWCC	2 cut(s)	946, 1096
SlaI	CTCGAG	1 cut(s)	378
SmiMI	CAYNNNNRTG	2 cut(s)	671, 901
SmlI	CTYRAG	2 cut(s)	85, 378
SmoI	CTYRAG	2 cut(s)	85, 378
Sse9I	AATT	4 cut(s)	237, 387, 411, 988
SsiI	CCGC	2 cut(s)	138, 533
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	3 cut(s)	111, 950, 1180
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	2 cut(s)	179, 949
TaaI	ACNGT	2 cut(s)	452, 961
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	5 cut(s)	106, 143, 379, 459, 715
TasI	AATT	4 cut(s)	237, 387, 411, 988
TfiI	GAWTC	6 cut(s)	8, 224, 367, 407, 805, 954
Tru1I	TTAA	5 cut(s)	681, 705, 911, 1080, 1140
Tru9I	TTAA	5 cut(s)	681, 705, 911, 1080, 1140
TscAI	CASTG	1 cut(s)	762
TseFI	GTSAC	3 cut(s)	446, 617, 814
TseI	GCWGC	2 cut(s)	40, 965
Tsp45I	GTSAC	3 cut(s)	446, 617, 814
TspDTI	ATGAA	7 cut(s)	92, 249, 347, 443, 564, 572, 1113
TspGWI	ACGGA	2 cut(s)	387, 573
TspRI	CASTG	1 cut(s)	762
Tth111I	GACNNNGTC	1 cut(s)	820
VpaK11BI	GGWCC	2 cut(s)	946, 1096
VspI	ATTAAT	1 cut(s)	911
XapI	RAATTY	1 cut(s)	387
XceI	RCATGY	2 cut(s)	27, 209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	177
XhoI	CTCGAG	1 cut(s)	378
XmaJI	CCTAGG	1 cut(s)	949
XmnI	GAANNNNTTC	2 cut(s)	721, 863
XspI	CTAG	3 cut(s)	111, 950, 1180
Zsp2I	ATGCAT	2 cut(s)	155, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.