AT3G22333

molybdenum ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000658
Physical Location & Seq
Forward (+)
7896153 .. 7896764
612 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22333.1

Sequence Viewer

Length: 612 bp
ATGGCAATGGAGCCGAAGAAGAAGACGAAGTTGATTAGTTCCGACAACGATTCAAAGTGGTCGATGCTTTCCCCCGACCTGATTCGATCGATCTTAGAACGCTTGAACTTTATAGACTTTCATCGAGCTAGGTACATCTCTTTAAATTGGTATTCCTCTTCGGAATTATGCATTATACAAAATCCAACTCCATGGACCATCCGCTTTTCAAACGACAACCATGTTTCATTGTTTGATCCTCTTCATGCAAAAACCTATGTAATAACAGACCTAGGGTTTGATTTACCAAGGAGTCGTTGTTTGGCTACTTCTGGTAGCTGGTTGTTGTTGTTAGATCATAGAACCGATTTTTATCTTTTGAATCTGTTTACTCGAGAGAGGATTTGTCTTCCGACTTTGGAAGCAATCGATGGATGGCAGATGAAGTTTGAGAGGGTTGGTGAGTCTGATTTCTTGAAGACATTCACTTATCGTGAAGGCTATACAAGTTATTCTTCTCGTATAAGCACCAAAATTAGAATAGAGAAAGCGGTTTTGTGGGTCGATGAAAGAAGCCGAGATTACTTAGTTGTGTGGAACCTTGAGAGCTTCTTTGCGTATCATAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00920 ko01100 ko01120 map00920 map01100 map01120
Pfam Domains
Protein Families
Cyt-b5 DUF295 Mo-co_dimer Oxidored_molyb

Protein Analysis

203

Amino Acids

24.11

Weight (kDa)

8.7

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 83 - 200 8.9e-17 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 202, 530
AclWI GGATC 1 cut(s) 230
AfaI GTAC 1 cut(s) 134
AgsI TTSAA 5 cut(s) 54, 106, 210, 361, 457
AluBI AGCT 3 cut(s) 128, 318, 588
AluI AGCT 3 cut(s) 128, 318, 588
AlwI GGATC 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 372
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
Asp700I GAANNNNTTC 1 cut(s) 461
AspA2I CCTAGG 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 452
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 1 cut(s) 195
AvrII CCTAGG 1 cut(s) 271
BbsI GAAGAC 3 cut(s) 29, 380, 464
BccI CCATC 3 cut(s) 206, 404, 408
BfaI CTAG 2 cut(s) 129, 272
BlnI CCTAGG 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 195
BmeT110I CYCGRG 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 2 cut(s) 12, 578
BmsI GCATC 1 cut(s) 54
BpiI GAAGAC 3 cut(s) 29, 380, 464
BpuEI CTTGAG 1 cut(s) 602
Bsa29I ATCGAT 2 cut(s) 89, 408
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 3 cut(s) 191, 271, 287
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bse3DI GCAATG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 351
BseCI ATCGAT 2 cut(s) 89, 408
BseDI CCNNGG 3 cut(s) 191, 271, 287
BseGI GGATG 2 cut(s) 198, 419
BseJI GATNNNNATC 1 cut(s) 351
BseMI GCAATG 1 cut(s) 12
Bsh1285I CGRYCG 1 cut(s) 89
BshVI ATCGAT 2 cut(s) 89, 408
BsiEI CGRYCG 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 372
BsoBI CYCGRG 1 cut(s) 372
Bsp143I GATC 4 cut(s) 86, 90, 235, 334
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 2 cut(s) 202, 530
BspDI ATCGAT 2 cut(s) 89, 408
BspLI GGNNCC 2 cut(s) 12, 578
BspPI GGATC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 12
BssECI CCNNGG 3 cut(s) 191, 271, 287
BssMI GATC 4 cut(s) 86, 90, 235, 334
BssT1I CCWWGG 3 cut(s) 191, 271, 287
Bst6I CTCTTC 2 cut(s) 163, 246
BstDEI CTNAG 2 cut(s) 94, 565
BstDSI CCRYGG 1 cut(s) 191
BstF5I GGATG 2 cut(s) 198, 419
BstKTI GATC 4 cut(s) 89, 93, 238, 337
BstMBI GATC 4 cut(s) 86, 90, 235, 334
BstMCI CGRYCG 1 cut(s) 89
BstV2I GAAGAC 3 cut(s) 29, 380, 464
BstXI CCANNNNNNTGG 1 cut(s) 192
Bsu15I ATCGAT 2 cut(s) 89, 408
BsuTUI ATCGAT 2 cut(s) 89, 408
BtgI CCRYGG 1 cut(s) 191
BtsCI GGATG 2 cut(s) 198, 419
Cfr13I GGNCC 1 cut(s) 195
ClaI ATCGAT 2 cut(s) 89, 408
Csp6I GTAC 1 cut(s) 133
CviAII CATG 3 cut(s) 192, 221, 245
CviJI RGCY 7 cut(s) 13, 128, 305, 318, 480, 555, 588
CviKI_1 RGCY 7 cut(s) 13, 128, 305, 318, 480, 555, 588
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 94, 565
DpnI GATC 4 cut(s) 88, 92, 237, 336
DpnII GATC 4 cut(s) 86, 90, 235, 334
DraI TTTAAA 1 cut(s) 144
Eam1104I CTCTTC 2 cut(s) 163, 246
EarI CTCTTC 2 cut(s) 163, 246
Eco130I CCWWGG 3 cut(s) 191, 271, 287
Eco47I GGWCC 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 372
EcoT14I CCWWGG 3 cut(s) 191, 271, 287
EcoT22I ATGCAT 1 cut(s) 173
ErhI CCWWGG 3 cut(s) 191, 271, 287
FaeI CATG 3 cut(s) 195, 224, 248
FalI AAGNNNNNCTT 2 cut(s) 478, 510
FatI CATG 3 cut(s) 191, 220, 244
FokI GGATG 2 cut(s) 185, 426
FspBI CTAG 2 cut(s) 129, 272
Hin1II CATG 3 cut(s) 195, 224, 248
HinfI GANTC 5 cut(s) 50, 82, 292, 361, 443
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 4 cut(s) 43, 163, 393, 448
Hpy188III TCNNGA 3 cut(s) 374, 454, 473
Hpy8I GTNNAC 1 cut(s) 369
HpyAV CCTTC 1 cut(s) 470
HpyCH4V TGCA 2 cut(s) 171, 248
HpyF3I CTNAG 2 cut(s) 94, 565
Hsp92II CATG 3 cut(s) 195, 224, 248
Kzo9I GATC 4 cut(s) 86, 90, 235, 334
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 3 cut(s) 92, 297, 304
LweI GCATC 1 cut(s) 54
MaeI CTAG 2 cut(s) 129, 272
MalI GATC 4 cut(s) 88, 92, 237, 336
MboI GATC 4 cut(s) 86, 90, 235, 334
MboII GAAGA 8 cut(s) 28, 31, 34, 150, 233, 380, 469, 486
MluCI AATT 3 cut(s) 145, 164, 513
MlyI GAGTC 2 cut(s) 301, 452
MmeI TCCRAC 3 cut(s) 66, 209, 416
MnlI CCTC 4 cut(s) 166, 249, 372, 426
Mph1103I ATGCAT 1 cut(s) 173
MroXI GAANNNNTTC 1 cut(s) 461
MseI TTAA 1 cut(s) 143
NcoI CCATGG 1 cut(s) 191
NdeII GATC 4 cut(s) 86, 90, 235, 334
NlaIII CATG 3 cut(s) 195, 224, 248
NlaIV GGNNCC 2 cut(s) 12, 578
NmeAIII GCCGAG 1 cut(s) 581
NsiI ATGCAT 1 cut(s) 173
PaeR7I CTCGAG 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 461
PfeI GAWTC 3 cut(s) 50, 82, 361
Ple19I CGATCG 1 cut(s) 89
PleI GAGTC 2 cut(s) 300, 451
PpsI GAGTC 2 cut(s) 300, 451
PspN4I GGNNCC 2 cut(s) 12, 578
PspPI GGNCC 1 cut(s) 195
PvuI CGATCG 1 cut(s) 89
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 143
Sau3AI GATC 4 cut(s) 86, 90, 235, 334
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 2 cut(s) 301, 452
SetI ASST 8 cut(s) 81, 130, 134, 257, 273, 320, 582, 590
SfaNI GCATC 1 cut(s) 54
Sfr274I CTCGAG 1 cut(s) 372
SinI GGWCC 1 cut(s) 195
SlaI CTCGAG 1 cut(s) 372
SmlI CTYRAG 2 cut(s) 372, 581
SmoI CTYRAG 2 cut(s) 372, 581
Sse9I AATT 3 cut(s) 145, 164, 513
SsiI CCGC 2 cut(s) 202, 530
SspMI CTAG 2 cut(s) 129, 272
StyI CCWWGG 3 cut(s) 191, 271, 287
TaqI TCGA 7 cut(s) 62, 85, 89, 124, 373, 408, 543
TasI AATT 3 cut(s) 145, 164, 513
TfiI GAWTC 3 cut(s) 50, 82, 361
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TspDTI ATGAA 5 cut(s) 110, 216, 233, 437, 561
VpaK11BI GGWCC 1 cut(s) 195
XhoI CTCGAG 1 cut(s) 372
XmaJI CCTAGG 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 461
XspI CTAG 2 cut(s) 129, 272
Zsp2I ATGCAT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.