Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Reverse (-)

11914981 .. 11916171

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAGAAGAACCAAAACCCTAATACCTGGTCGGATCTTCCTCTAGATCTCTTGAACTTAGTTTTCAAACGCCTCAGCTTTGCTAATTTTCGACAAGCCAAATCGGTGTGTTCGTCTTGGTACTCTGCTTCGAAACAATCCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCCCAAAGACAAAAACAACAACAAAAACAGTTCATGCACGATTTTTTTCAATCCCGAGGACAAAGACCAACTTTACCAAACGCAAGATCTTGGTGTTGAATTTGCAAAGAGTGTTTGTCTAGCAACCTATGGAAGTTGGCTCCTGATGCAAGATTCAAAGTATAATCTATACATTTTGAATCCATTCACCTACGAGAAGATCGGTCTTCCCGCTATTGAATCACAACAAGTTGGCATGGTAAAGGTTGACCAAACCATAGATGATGATTTTCTAACTTTCGACGATCACAACCACGTTAAGTTATTCAAAGGTAATAATACCGTACGTACCCCTGTGTTTTGGATTGACGAGAAAACCAAAGAGTACATAGCTCTGTGGGGGCTTGGATATTGGTGTGTGGTTTATGCCAAGAACGGAGATAAGTTGTGGAATCAAATTCCAGAAATTATTTTAGATTCTCTTGACATGGTTTACAAGGATCACAAGCTTTACTCATTTAGCTACAGAAATCTTTTCACAATCCTAGATTTTTCTGGAGAGATTCCTCGAAAAGCCTTTCAATGTTTTATGCATGTCTATAGATCTGAGTGGTTAAGTCCTCGTAGTCGTCAATTAAGTAATTCATGGTGCGTTGCTGAGACAAAACTTGTAGTCACAGTAACCGGAGATGTCCTCTTGGTTGAAAGAATGTTAAGACATTGGTCTAGAATCCAGTCATTCAACGTCTACAAGTTTTATTCGTCAGGGACATTTCTTGATAAATATGAACTTGCTGATTCTTTGGGCGACGAGGCAATGCTTTTGGATCTAGGCATCACCGTGCTCGCCAATGAAGTTGAGGGACTCCATAGAAATACTATATATTTCAGTGATAGCCATGACACGACCACAAAAGATCTCTTTCTGTTCAATTACGAGACACGGGAGATGGAGCCACTGCACAAATTTGATTTCGATTGTTCGTTACTTGAACTCTCTGCTCGATGGTTCTTACCAAGCTTTTCGCATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

396

Amino Acids

46.37

Weight (kDa)

5.65

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	10 - 47	5.1e-08	F-box domain
Beta-prop_KIB1-4	PF03478	74 - 363	1.9e-46	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	903
AciI	CCGC	1 cut(s)	387
AclWI	GGATC	4 cut(s)	42, 151, 663, 990
AcsI	RAATTY	3 cut(s)	275, 612, 1121
AfaI	GTAC	4 cut(s)	122, 501, 505, 542
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	5 cut(s)	78, 548, 664, 678, 1176
AluI	AGCT	5 cut(s)	78, 548, 664, 678, 1176
Alw21I	GWGCWC	1 cut(s)	1002
Alw26I	GTCTC	2 cut(s)	809, 1088
AlwI	GGATC	4 cut(s)	42, 151, 663, 990
Ama87I	CYCGRG	1 cut(s)	230
ApoI	RAATTY	3 cut(s)	275, 612, 1121
Asp700I	GAANNNNTTC	1 cut(s)	359
AsuHPI	GGTGA	2 cut(s)	355, 985
AsuII	TTCGAA	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	1002
BbvCI	CCTCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	1099, 1155
BciT130I	CCWGG	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	809, 1088
BfaI	CTAG	5 cut(s)	44, 296, 701, 882, 986
BfmI	CTRYAG	2 cut(s)	679, 754
BglII	AGATCT	4 cut(s)	46, 262, 758, 1072
Bme1390I	CCNGG	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	230
BmiI	GGNNCC	2 cut(s)	317, 1110
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	3 cut(s)	159, 312, 999
BoxI	GACNNNNGTC	1 cut(s)	877
BpiI	GAAGAC	1 cut(s)	374
BplI	GAGNNNNNCTC	2 cut(s)	834, 866
BpmI	CTGGAG	1 cut(s)	732
Bpu10I	CCTNAGC	1 cut(s)	74
Bpu14I	TTCGAA	1 cut(s)	131
BsaAI	YACGTR	1 cut(s)	503
BsaJI	CCNNGG	2 cut(s)	161, 231
BsaWI	WCCGGW	1 cut(s)	839
Bse1I	ACTGG	1 cut(s)	889
Bse3DI	GCAATG	1 cut(s)	978
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	161, 231
BseMI	GCAATG	1 cut(s)	978
BseMII	CTCAG	3 cut(s)	88, 753, 804
BseNI	ACTGG	1 cut(s)	889
BseSI	GKGCMC	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	1100
BsiHKAI	GWGCWC	1 cut(s)	1002
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	840
BsiWI	CGTACG	1 cut(s)	499
BslFI	GGGAC	2 cut(s)	937, 1032
BsmAI	GTCTC	2 cut(s)	809, 1088
BsmFI	GGGAC	2 cut(s)	937, 1032
BsoBI	CYCGRG	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	147, 1002
BspACI	CCGC	1 cut(s)	387
BspCNI	CTCAG	3 cut(s)	87, 754, 805
BspLI	GGNNCC	2 cut(s)	317, 1110
BspPI	GGATC	4 cut(s)	42, 151, 663, 990
BspQI	GCTCTTC	1 cut(s)	179
BspT104I	TTCGAA	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	978
BsrI	ACTGG	1 cut(s)	889
BssECI	CCNNGG	2 cut(s)	161, 231
BssT1I	CCWWGG	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	4 cut(s)	206, 499, 835, 997
Bst6I	CTCTTC	1 cut(s)	179
BstBAI	YACGTR	1 cut(s)	503
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	1002
BstDEI	CTNAG	4 cut(s)	58, 74, 762, 813
BstMAI	GTCTC	2 cut(s)	809, 1088
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	752
BstPAI	GACNNNNGTC	1 cut(s)	877
BstSCI	CCNGG	1 cut(s)	26
BstSFI	CTRYAG	2 cut(s)	679, 754
BstSLI	GKGCMC	1 cut(s)	147
BstSNI	TACGTA	1 cut(s)	503
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	7 cut(s)	34, 46, 156, 262, 758, 982, 1072
BstYI	RGATCY	7 cut(s)	34, 46, 156, 262, 758, 982, 1072
BtsI	GCAGTG	1 cut(s)	1112
BtsIMutI	CAGTG	2 cut(s)	1051, 1112
Cac8I	GCNNGC	1 cut(s)	1002
CsiI	ACCWGGT	1 cut(s)	26
Csp6I	GTAC	4 cut(s)	121, 500, 504, 541
CviAII	CATG	7 cut(s)	210, 412, 643, 749, 801, 1055, 1188
CviQI	GTAC	4 cut(s)	121, 500, 504, 541
DdeI	CTNAG	4 cut(s)	58, 74, 762, 813
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco105I	TACGTA	1 cut(s)	503
Eco130I	CCWWGG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	7 cut(s)	213, 415, 646, 752, 804, 1058, 1191
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	2 cut(s)	937, 1032
FatI	CATG	7 cut(s)	209, 411, 642, 748, 800, 1054, 1187
FauI	CCCGC	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	903
FspBI	CTAG	5 cut(s)	44, 296, 701, 882, 986
GsuI	CTGGAG	1 cut(s)	732
HapII	CCGG	1 cut(s)	840
Hin1II	CATG	7 cut(s)	213, 415, 646, 752, 804, 1058, 1191
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	2 cut(s)	662, 1174
HinfI	GANTC	9 cut(s)	329, 355, 395, 607, 632, 718, 885, 953, 1020
HpaII	CCGG	1 cut(s)	840
HphI	GGTGA	2 cut(s)	355, 985
Hpy166II	GTNNAC	3 cut(s)	424, 649, 904
Hpy188I	TCNGA	3 cut(s)	34, 156, 763
Hpy188III	TCNNGA	9 cut(s)	44, 52, 230, 319, 617, 638, 711, 882, 932
Hpy8I	GTNNAC	3 cut(s)	424, 649, 904
Hpy99I	CGWCG	2 cut(s)	461, 968
HpyCH4III	ACNGT	4 cut(s)	206, 499, 835, 997
HpyCH4IV	ACGT	3 cut(s)	471, 502, 900
HpyCH4V	TGCA	5 cut(s)	213, 281, 325, 748, 1117
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	4 cut(s)	58, 74, 762, 813
HpySE526I	ACGT	3 cut(s)	471, 502, 900
Hsp92II	CATG	7 cut(s)	213, 415, 646, 752, 804, 1058, 1191
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	2 cut(s)	321, 1108
LpnPI	CCDG	9 cut(s)	13, 40, 332, 522, 630, 696, 853, 902, 906
LweI	GCATC	3 cut(s)	159, 312, 999
MabI	ACCWGGT	1 cut(s)	26
MaeI	CTAG	5 cut(s)	44, 296, 701, 882, 986
MaeII	ACGT	3 cut(s)	471, 502, 900
MaeIII	GTNAC	3 cut(s)	829, 835, 1140
MboII	GAAGA	5 cut(s)	19, 29, 166, 374, 385
MflI	RGATCY	7 cut(s)	34, 46, 156, 262, 758, 982, 1072
MhlI	GDGCHC	2 cut(s)	147, 1002
MluCI	AATT	8 cut(s)	85, 275, 612, 621, 788, 796, 1087, 1121
MlyI	GAGTC	1 cut(s)	1014
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	8 cut(s)	51, 83, 226, 732, 786, 860, 961, 1009
Mph1103I	ATGCAT	1 cut(s)	750
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	4 cut(s)	474, 770, 791, 869
MslI	CAYNNNNRTG	1 cut(s)	995
MspI	CCGG	1 cut(s)	840
MspR9I	CCNGG	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	322
NlaIII	CATG	7 cut(s)	213, 415, 646, 752, 804, 1058, 1191
NlaIV	GGNNCC	2 cut(s)	317, 1110
NmuCI	GTSAC	1 cut(s)	829
NsiI	ATGCAT	1 cut(s)	750
NspI	RCATGY	1 cut(s)	752
NspV	TTCGAA	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	8 cut(s)	329, 355, 395, 607, 632, 718, 885, 953
Pfl23II	CGTACG	1 cut(s)	499
PleI	GAGTC	1 cut(s)	1014
PpsI	GAGTC	1 cut(s)	1014
Ppu21I	YACGTR	1 cut(s)	503
PshAI	GACNNNNGTC	1 cut(s)	877
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspLI	CGTACG	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	317, 1110
PsuI	RGATCY	7 cut(s)	34, 46, 156, 262, 758, 982, 1072
RsaI	GTAC	4 cut(s)	122, 501, 505, 542
RsaNI	GTAC	4 cut(s)	121, 500, 504, 541
RseI	CAYNNNNRTG	1 cut(s)	995
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	4 cut(s)	474, 770, 791, 869
SchI	GAGTC	1 cut(s)	1014
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	2 cut(s)	147, 1002
SexAI	ACCWGGT	1 cut(s)	26
SfaNI	GCATC	3 cut(s)	159, 312, 999
SfcI	CTRYAG	2 cut(s)	679, 754
SfuI	TTCGAA	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	995
SnaBI	TACGTA	1 cut(s)	503
Sse9I	AATT	8 cut(s)	85, 275, 612, 621, 788, 796, 1087, 1121
SsiI	CCGC	1 cut(s)	387
SspMI	CTAG	5 cut(s)	44, 296, 701, 882, 986
StyD4I	CCNGG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	4 cut(s)	206, 499, 835, 997
TaiI	ACGT	3 cut(s)	474, 505, 903
TaqI	TCGA	6 cut(s)	91, 131, 456, 724, 1131, 1159
TaqII	GACCGA	1 cut(s)	368
TasI	AATT	8 cut(s)	85, 275, 612, 621, 788, 796, 1087, 1121
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	8 cut(s)	329, 355, 395, 607, 632, 718, 885, 953
Tru1I	TTAA	4 cut(s)	474, 770, 791, 869
Tru9I	TTAA	4 cut(s)	474, 770, 791, 869
TscAI	CASTG	2 cut(s)	1051, 1119
TseFI	GTSAC	1 cut(s)	829
Tsp45I	GTSAC	1 cut(s)	829
TspDTI	ATGAA	4 cut(s)	198, 789, 957, 1023
TspGWI	ACGGA	2 cut(s)	130, 606
TspRI	CASTG	2 cut(s)	1051, 1119
XapI	RAATTY	3 cut(s)	275, 612, 1121
XbaI	TCTAGA	2 cut(s)	43, 881
XceI	RCATGY	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	903
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	5 cut(s)	44, 296, 701, 882, 986
Zsp2I	ATGCAT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.