AT2G14500

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000658
Physical Location & Seq
Forward (+)
6166936 .. 6167979
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G14500.1

Sequence Viewer

Length: 1044 bp
ATGGAAACTCCTAATCCTCTCACCTTGTCGGAACTCCCTCATGATTTGCTGAGAAATATTTTCAACCGATTGAGCTTTGCAGATTTCCATCGTGCTACTTGGAATTCGATTTCGAAACAAACGGCTCCCCCAAAAACAAAATCTCCATGGCTAATTCTGTTTCCAGATGAAGGAGTTCATGGTTGCGTGCTGTACAATCCAGACGAAGATAGGATTTACAAATCGGTGAGAGACTTCTCTGGGACTATATTCCTTGCAAACTCGGGTAATTGGTTTCTTGTAATGGATTCTAAATCCAATCTCTATATAATAGATGTGTTTAGCGAGAATAGGATCGATCTTCCGCCTCTAGAGTCTCTCCTGTCAGATAACTTTACTTTCGAGCAAAAAGGGGATAAGGAATTGAAATGGCAAGCATCTAATGATCAGATTCTAGTTTTTAGATTACCAAGAGCTGAAGAGTTAAGAGGTATTTTGTGGGTAGACGAGAAAATGAAAGAGTTTGTTGCAGTTTGGTTCTTGGAAGACTCTTGCAACTTTTTAGCCTTTTACAAGAAAGCTGATGATCATTACAGTCACATTCAACTAGAATATGTCATCACCGATGTGTTTCAAAGCGTATCTGATATTGTACTCCATGGTTGCTTTCTTTACATCGGTGTTGGTGATTACATTCAAATCATCGATTTGTCTAAAGACCAAGGTTTCAAGGATGTTACTCGAAATTATCTATTCAACGTGCATAATGGACCATGGGGTTTTCGAAGTATTTTTAACCTTGTGGTTACAACATCAGGAGAGGTTTTGATGGTTCTAAACAATCTTTACGAGAAAAATATTGAAAGCGAGAAGAGCTTCCGCATCTTCAAGAAGGATCCTAATCCAGACCCAAATAAACACGACAACTTGCTTGTTGAGGTAGATTCTCTAGGTAATGAAGAGGTTATGCTTCTTGACTTGGGTATCACTATGCATGGTATCGAACCAAACTCCATATATTTTACTCGTCATGACCGAGTCGTTCACAGATTATATATAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

347

Amino Acids

40.31

Weight (kDa)

5.1

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 64 - 338 3.6e-31 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 483
AciI CCGC 2 cut(s) 344, 859
AclWI GGATC 3 cut(s) 341, 869, 882
AcsI RAATTY 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 2 cut(s) 194, 633
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 9 cut(s) 64, 406, 584, 614, 677, 709, 736, 842, 868
AleI CACNNNNGTG 1 cut(s) 605
AluBI AGCT 4 cut(s) 75, 455, 560, 855
AluI AGCT 4 cut(s) 75, 455, 560, 855
Alw26I GTCTC 2 cut(s) 225, 360
AlwI GGATC 3 cut(s) 341, 869, 882
Ama87I CYCGRG 1 cut(s) 262
ApoI RAATTY 1 cut(s) 103
Asp700I GAANNNNTTC 2 cut(s) 174, 854
AspS9I GGNCC 1 cut(s) 749
AsuHPI GGTGA 4 cut(s) 13, 238, 592, 677
AsuII TTCGAA 2 cut(s) 113, 763
AvaI CYCGRG 1 cut(s) 262
AvaII GGWCC 1 cut(s) 749
BaeI ACNNNNGTAYC 2 cut(s) 946, 979
BamHI GGATCC 1 cut(s) 874
BbsI GAAGAC 1 cut(s) 531
BccI CCATC 2 cut(s) 96, 802
BceAI ACGGC 1 cut(s) 138
BclI TGATCA 2 cut(s) 424, 565
BcoDI GTCTC 2 cut(s) 225, 360
BfaI CTAG 4 cut(s) 350, 434, 587, 929
Bme18I GGWCC 1 cut(s) 749
BmeT110I CYCGRG 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 749
BmiI GGNNCC 2 cut(s) 126, 876
BmsI GCATC 2 cut(s) 425, 870
BpiI GAAGAC 1 cut(s) 531
Bpu14I TTCGAA 2 cut(s) 113, 763
Bsa29I ATCGAT 2 cut(s) 336, 684
BsaBI GATNNNNATC 2 cut(s) 87, 879
BsaJI CCNNGG 4 cut(s) 146, 637, 700, 752
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse8I GATNNNNATC 2 cut(s) 87, 879
BseCI ATCGAT 2 cut(s) 336, 684
BseDI CCNNGG 4 cut(s) 146, 637, 700, 752
BseGI GGATG 1 cut(s) 718
BseJI GATNNNNATC 2 cut(s) 87, 879
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 41
BshVI ATCGAT 2 cut(s) 336, 684
BsiHKCI CYCGRG 1 cut(s) 262
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 2 cut(s) 225, 360
BsmFI GGGAC 1 cut(s) 256
BsoBI CYCGRG 1 cut(s) 262
Bsp119I TTCGAA 2 cut(s) 113, 763
Bsp1407I TGTACA 1 cut(s) 192
Bsp143I GATC 5 cut(s) 333, 337, 424, 565, 874
Bsp19I CCATGG 3 cut(s) 146, 637, 752
BspACI CCGC 2 cut(s) 344, 859
BspCNI CTCAG 1 cut(s) 42
BspDI ATCGAT 2 cut(s) 336, 684
BspHI TCATGA 2 cut(s) 40, 1009
BspLI GGNNCC 2 cut(s) 126, 876
BspPI GGATC 3 cut(s) 341, 869, 882
BspQI GCTCTTC 1 cut(s) 845
BspT104I TTCGAA 2 cut(s) 113, 763
BsrGI TGTACA 1 cut(s) 192
BssECI CCNNGG 4 cut(s) 146, 637, 700, 752
BssMI GATC 5 cut(s) 333, 337, 424, 565, 874
BssT1I CCWWGG 4 cut(s) 146, 637, 700, 752
Bst4CI ACNGT 1 cut(s) 575
Bst6I CTCTTC 3 cut(s) 453, 845, 933
BstAUI TGTACA 1 cut(s) 192
BstBI TTCGAA 2 cut(s) 113, 763
BstC8I GCNNGC 2 cut(s) 188, 414
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 3 cut(s) 146, 637, 752
BstF5I GGATG 1 cut(s) 718
BstKTI GATC 5 cut(s) 336, 340, 427, 568, 877
BstMAI GTCTC 2 cut(s) 225, 360
BstMBI GATC 5 cut(s) 333, 337, 424, 565, 874
BstMWI GCNNNNNNNGC 1 cut(s) 852
BstV2I GAAGAC 1 cut(s) 531
BstX2I RGATCY 1 cut(s) 874
BstYI RGATCY 1 cut(s) 874
Bsu15I ATCGAT 2 cut(s) 336, 684
BsuTUI ATCGAT 2 cut(s) 336, 684
BtgI CCRYGG 3 cut(s) 146, 637, 752
BtsCI GGATG 1 cut(s) 718
Cac8I GCNNGC 2 cut(s) 188, 414
CciI TCATGA 2 cut(s) 40, 1009
Cfr13I GGNCC 1 cut(s) 749
ClaI ATCGAT 2 cut(s) 336, 684
Csp6I GTAC 2 cut(s) 193, 632
CviAII CATG 7 cut(s) 41, 147, 179, 638, 753, 974, 1010
CviJI RGCY 7 cut(s) 75, 125, 151, 455, 545, 560, 855
CviKI_1 RGCY 7 cut(s) 75, 125, 151, 455, 545, 560, 855
CviQI GTAC 2 cut(s) 193, 632
DdeI CTNAG 1 cut(s) 50
DpnI GATC 5 cut(s) 335, 339, 426, 567, 876
DpnII GATC 5 cut(s) 333, 337, 424, 565, 874
Eam1104I CTCTTC 3 cut(s) 453, 845, 933
EarI CTCTTC 3 cut(s) 453, 845, 933
EciI GGCGGA 1 cut(s) 333
Eco130I CCWWGG 4 cut(s) 146, 637, 700, 752
Eco47I GGWCC 1 cut(s) 749
Eco57I CTGAAG 1 cut(s) 477
Eco88I CYCGRG 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 103
EcoT14I CCWWGG 4 cut(s) 146, 637, 700, 752
EcoT22I ATGCAT 1 cut(s) 975
ErhI CCWWGG 4 cut(s) 146, 637, 700, 752
FaeI CATG 7 cut(s) 44, 150, 182, 641, 756, 977, 1013
FaqI GGGAC 1 cut(s) 256
FatI CATG 7 cut(s) 40, 146, 178, 637, 752, 973, 1009
FbaI TGATCA 2 cut(s) 424, 565
FblI GTMKAC 1 cut(s) 483
FokI GGATG 1 cut(s) 725
FspBI CTAG 4 cut(s) 350, 434, 587, 929
Hin1II CATG 7 cut(s) 44, 150, 182, 641, 756, 977, 1013
HinfI GANTC 6 cut(s) 287, 353, 430, 527, 923, 1017
HphI GGTGA 4 cut(s) 13, 238, 592, 677
Hpy166II GTNNAC 2 cut(s) 484, 1024
Hpy188I TCNGA 4 cut(s) 31, 367, 429, 625
Hpy188III TCNNGA 9 cut(s) 41, 164, 200, 350, 795, 868, 884, 953, 1010
Hpy8I GTNNAC 2 cut(s) 484, 1024
HpyAV CCTTC 2 cut(s) 164, 865
HpyCH4III ACNGT 1 cut(s) 575
HpyCH4IV ACGT 1 cut(s) 738
HpyCH4V TGCA 6 cut(s) 80, 257, 509, 534, 742, 973
HpyF10VI GCNNNNNNNGC 1 cut(s) 852
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 1 cut(s) 738
Hsp92II CATG 7 cut(s) 44, 150, 182, 641, 756, 977, 1013
Ksp22I TGATCA 2 cut(s) 424, 565
Kzo9I GATC 5 cut(s) 333, 337, 424, 565, 874
LguI GCTCTTC 1 cut(s) 845
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 6 cut(s) 177, 213, 225, 374, 780, 897
LweI GCATC 2 cut(s) 425, 870
MaeI CTAG 4 cut(s) 350, 434, 587, 929
MaeII ACGT 1 cut(s) 738
MaeIII GTNAC 3 cut(s) 575, 715, 784
MalI GATC 5 cut(s) 335, 339, 426, 567, 876
MboI GATC 5 cut(s) 333, 337, 424, 565, 874
MboII GAAGA 7 cut(s) 218, 332, 470, 536, 856, 862, 950
MflI RGATCY 1 cut(s) 874
MluCI AATT 5 cut(s) 103, 153, 268, 401, 724
MlyI GAGTC 3 cut(s) 362, 521, 1026
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 7 cut(s) 27, 48, 357, 461, 793, 910, 934
Mph1103I ATGCAT 1 cut(s) 975
MroXI GAANNNNTTC 2 cut(s) 174, 854
MseI TTAA 2 cut(s) 464, 774
MslI CAYNNNNRTG 1 cut(s) 605
MwoI GCNNNNNNNGC 1 cut(s) 852
NcoI CCATGG 3 cut(s) 146, 637, 752
NdeII GATC 5 cut(s) 333, 337, 424, 565, 874
NlaIII CATG 7 cut(s) 44, 150, 182, 641, 756, 977, 1013
NlaIV GGNNCC 2 cut(s) 126, 876
NmuCI GTSAC 1 cut(s) 575
NsiI ATGCAT 1 cut(s) 975
NspV TTCGAA 2 cut(s) 113, 763
OliI CACNNNNGTG 1 cut(s) 605
PagI TCATGA 2 cut(s) 40, 1009
PciSI GCTCTTC 1 cut(s) 845
PcsI WCGNNNNNNNCGW 1 cut(s) 1012
PdmI GAANNNNTTC 2 cut(s) 174, 854
PfeI GAWTC 3 cut(s) 287, 430, 923
PflFI GACNNNGTC 1 cut(s) 1016
PleI GAGTC 3 cut(s) 361, 521, 1025
PpsI GAGTC 3 cut(s) 361, 521, 1025
PspN4I GGNNCC 2 cut(s) 126, 876
PspPI GGNCC 1 cut(s) 749
PsuI RGATCY 1 cut(s) 874
PsyI GACNNNGTC 1 cut(s) 1016
RsaI GTAC 2 cut(s) 194, 633
RsaNI GTAC 2 cut(s) 193, 632
RseI CAYNNNNRTG 1 cut(s) 605
SapI GCTCTTC 1 cut(s) 845
SaqAI TTAA 2 cut(s) 464, 774
Sau3AI GATC 5 cut(s) 333, 337, 424, 565, 874
Sau96I GGNCC 1 cut(s) 749
SchI GAGTC 3 cut(s) 362, 521, 1026
SfaNI GCATC 2 cut(s) 425, 870
SfuI TTCGAA 2 cut(s) 113, 763
SinI GGWCC 1 cut(s) 749
SmiMI CAYNNNNRTG 1 cut(s) 605
Sse9I AATT 5 cut(s) 103, 153, 268, 401, 724
SsiI CCGC 2 cut(s) 344, 859
SspI AATATT 2 cut(s) 58, 838
SspMI CTAG 4 cut(s) 350, 434, 587, 929
StyI CCWWGG 4 cut(s) 146, 637, 700, 752
TaaI ACNGT 1 cut(s) 575
TaiI ACGT 1 cut(s) 741
TaqI TCGA 8 cut(s) 107, 113, 336, 381, 684, 721, 763, 981
TaqII GACCGA 1 cut(s) 1029
TasI AATT 5 cut(s) 103, 153, 268, 401, 724
TatI WGTACW 2 cut(s) 192, 631
TfiI GAWTC 3 cut(s) 287, 430, 923
Tru1I TTAA 2 cut(s) 464, 774
Tru9I TTAA 2 cut(s) 464, 774
TseFI GTSAC 1 cut(s) 575
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 4 cut(s) 167, 183, 509, 951
Tth111I GACNNNGTC 1 cut(s) 1016
VpaK11BI GGWCC 1 cut(s) 749
XapI RAATTY 1 cut(s) 103
XbaI TCTAGA 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 2 cut(s) 174, 854
XspI CTAG 4 cut(s) 350, 434, 587, 929
Zsp2I ATGCAT 1 cut(s) 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.