Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Reverse (-)

9782508 .. 9783644

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17565.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGACCAAAGCGACAAGAACCCTAATCGGCGGCTCCGAGTGATTCCCAAGTGGTCGGAGCTTTGTCCGGACTTGTTACGAAGTATTTTCGAACAACTGAGTTTCACAAATCTCAATCGAGCAAAATTAGTTTGTAGGTCATGGAACTCTGCTTCGAGAGGCTGCGTTCCCAAACGAAATCAGATTCCGTGGATGATACTTTTCCCTCAAAAGAGCGAAAACAATAGTAGCAATAACTGTGTTTTATTCGTTCCTGATGATAACGACAAAGTTTACAAGACTCGAGATCTCGGTGTTGACTTTGCACAAAGTATTTGTCTTGCGACTTACGGTAGCTGGCTCTTGATGTTTAACCATCTTCGGAATCTCTACATTCTTAATCCATTGACGTTAGAGAGGATTGATCTACCACATTCCACCTCTATCAATCCAAATATGTGCTATCCAAACTTCAAATACTACCGATCAGCTTGTCTCTGGATAAACAACATAACCAAAGATTACCTAGTTGTTTGGCCCATCTATAACAAATGTTTTTTTACAAAGAAAGGTGATGACACATGGCGATTCGCTCCCGCTTGTCACATTCGGATGAAAGATCAAATTATCTATAATCACAAAGATCACAAGGTTTACCAGTATGCTTCCTATGGCTTTATCTATGTTTGGGATTTCTCTAGTGATATCCCTCATGTAGATAAGCATCTACCAGCTGTTAGCTTCATTTCTGGCCGTGAGATTGGTGACAAGAACAAATACTATAGGATAAGTCATCAGATGGTGATGTCATTGTCTGGAGAAGTTGTGGTGGTAAAAATAATGCACTACTACGACCTCTCAAGATGGCGTTTTCGCATCTTCGAGTTAAATCCTCTGACGCAGAGATGGGTAAAAGTCGATTCTTTAGGTGATGCGGCTATAATCTTGGACATGGGTATCACTGTTGTCGCTAAAGATATTCCAGGGATCAAGAAAAACTCCATTTATTTCAGTGGCCTCAACCACCCCTTAACGGATCCCGAATGTAGATTTGTCTATGATCTCACAACCGGCACCATGGAACCTTTGCCACAATGCGTTCTCTCCTCCATGCTCTTCTCTGATTCTCGATGGTTCTTACCTGGTTTCACCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

378

Amino Acids

44.22

Weight (kDa)

8.98

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	18 - 58	7.2e-09	F-box domain
Beta-prop_KIB1-4	PF03478	87 - 346	6.4e-42	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1052
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	3 cut(s)	31, 576, 914
AclWI	GGATC	3 cut(s)	974, 1010, 1023
AcoI	YGGCCR	1 cut(s)	730
AfiI	CCNNNNNNNGG	1 cut(s)	1012
AgsI	TTSAA	1 cut(s)	454
AjnI	CCWGG	2 cut(s)	961, 1120
AluBI	AGCT	5 cut(s)	61, 336, 470, 713, 720
AluI	AGCT	5 cut(s)	61, 336, 470, 713, 720
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	3 cut(s)	974, 1010, 1023
Ama87I	CYCGRG	1 cut(s)	282
Aor13HI	TCCGGA	1 cut(s)	67
AoxI	GGCC	3 cut(s)	515, 730, 994
ApeKI	GCWGC	1 cut(s)	162
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
AspS9I	GGNCC	2 cut(s)	4, 516
AsuHPI	GGTGA	5 cut(s)	563, 755, 793, 920, 1120
AsuII	TTCGAA	1 cut(s)	90
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	4
BaeI	ACNNNNGTAYC	2 cut(s)	919, 952
BamHI	GGATCC	1 cut(s)	1015
BanI	GGYRCC	1 cut(s)	1052
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	6 cut(s)	363, 527, 772, 837, 879, 1104
BceAI	ACGGC	1 cut(s)	717
BciT130I	CCWGG	2 cut(s)	963, 1122
BcoDI	GTCTC	1 cut(s)	479
BfaI	CTAG	2 cut(s)	506, 678
BfmI	CTRYAG	1 cut(s)	760
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	3 cut(s)	32, 163, 915
BlsI	GCNGC	3 cut(s)	33, 164, 916
Bme1390I	CCNGG	2 cut(s)	963, 1122
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	2 cut(s)	4, 516
BmiI	GGNNCC	4 cut(s)	35, 1017, 1054, 1062
BmrFI	CCNGG	2 cut(s)	963, 1122
BmsI	GCATC	3 cut(s)	712, 864, 901
BpmI	CTGGAG	1 cut(s)	816
Bpu14I	TTCGAA	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	823
BsaBI	GATNNNNATC	1 cut(s)	702
BsaJI	CCNNGG	3 cut(s)	188, 962, 1056
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	1 cut(s)	1012
Bse118I	RCCGGY	1 cut(s)	1049
Bse1I	ACTGG	2 cut(s)	637, 1131
Bse8I	GATNNNNATC	1 cut(s)	702
BseAI	TCCGGA	1 cut(s)	67
BseBI	CCWGG	2 cut(s)	963, 1122
BseDI	CCNNGG	3 cut(s)	188, 962, 1056
BseGI	GGATG	2 cut(s)	198, 597
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	1 cut(s)	1012
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	2 cut(s)	637, 1131
BseRI	GAGGAG	1 cut(s)	1075
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	3 cut(s)	517, 732, 996
BshNI	GGYRCC	1 cut(s)	1052
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	68, 1050
BslI	CCNNNNNNNGG	1 cut(s)	1012
BsmAI	GTCTC	1 cut(s)	479
BsnI	GGCC	3 cut(s)	517, 732, 996
BsoBI	CYCGRG	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	90
Bsp13I	TCCGGA	1 cut(s)	67
Bsp143I	GATC	8 cut(s)	286, 403, 464, 598, 622, 966, 1015, 1039
Bsp19I	CCATGG	1 cut(s)	1056
BspACI	CCGC	3 cut(s)	31, 576, 914
BspANI	GGCC	3 cut(s)	517, 732, 996
BspCNI	CTCAG	1 cut(s)	90
BspEI	TCCGGA	1 cut(s)	67
BspLI	GGNNCC	4 cut(s)	35, 1017, 1054, 1062
BspPI	GGATC	3 cut(s)	974, 1010, 1023
BspQI	GCTCTTC	1 cut(s)	1100
BspT104I	TTCGAA	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	1052
BsrFI	RCCGGY	1 cut(s)	1049
BsrI	ACTGG	2 cut(s)	637, 1131
BssAI	RCCGGY	1 cut(s)	1049
BssECI	CCNNGG	3 cut(s)	188, 962, 1056
BssMI	GATC	8 cut(s)	286, 403, 464, 598, 622, 966, 1015, 1039
BssT1I	CCWWGG	1 cut(s)	1056
Bst2UI	CCWGG	2 cut(s)	963, 1122
Bst4CI	ACNGT	3 cut(s)	239, 332, 943
Bst6I	CTCTTC	1 cut(s)	1100
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	1 cut(s)	98
BstDSI	CCRYGG	2 cut(s)	188, 1056
BstF5I	GGATG	2 cut(s)	198, 597
BstKTI	GATC	8 cut(s)	289, 406, 467, 601, 625, 969, 1018, 1042
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	8 cut(s)	286, 403, 464, 598, 622, 966, 1015, 1039
BstNI	CCWGG	2 cut(s)	963, 1122
BstSCI	CCNGG	2 cut(s)	961, 1120
BstSFI	CTRYAG	1 cut(s)	760
BstV1I	GCAGC	1 cut(s)	149
BstX2I	RGATCY	2 cut(s)	286, 1015
BstYI	RGATCY	2 cut(s)	286, 1015
BsuRI	GGCC	3 cut(s)	517, 732, 996
BtgI	CCRYGG	2 cut(s)	188, 1056
BtsCI	GGATG	2 cut(s)	198, 597
BtsIMutI	CAGTG	2 cut(s)	939, 997
Cac8I	GCNNGC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	1049
Cfr13I	GGNCC	2 cut(s)	4, 516
CseI	GACGC	1 cut(s)	886
CsiI	ACCWGGT	1 cut(s)	1120
CviAII	CATG	6 cut(s)	141, 561, 692, 931, 1057, 1090
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	8 cut(s)	288, 405, 466, 600, 624, 968, 1017, 1041
DpnII	GATC	8 cut(s)	286, 403, 464, 598, 622, 966, 1015, 1039
EaeI	YGGCCR	1 cut(s)	730
Eam1104I	CTCTTC	1 cut(s)	1100
EarI	CTCTTC	1 cut(s)	1100
Eco130I	CCWWGG	1 cut(s)	1056
Eco32I	GATATC	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	282
EcoRII	CCWGG	2 cut(s)	961, 1120
EcoRV	GATATC	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	1056
ErhI	CCWWGG	1 cut(s)	1056
FaeI	CATG	6 cut(s)	144, 564, 695, 934, 1060, 1093
FatI	CATG	6 cut(s)	140, 560, 691, 930, 1056, 1089
FauI	CCCGC	1 cut(s)	583
Fnu4HI	GCNGC	3 cut(s)	32, 163, 915
FokI	GGATG	2 cut(s)	205, 604
Fsp4HI	GCNGC	3 cut(s)	32, 163, 915
FspBI	CTAG	2 cut(s)	506, 678
GluI	GCNGC	3 cut(s)	32, 163, 915
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	3 cut(s)	517, 732, 996
HapII	CCGG	2 cut(s)	68, 1050
HgaI	GACGC	1 cut(s)	886
Hin1II	CATG	6 cut(s)	144, 564, 695, 934, 1060, 1093
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	7 cut(s)	43, 184, 280, 364, 567, 899, 1103
HpaII	CCGG	2 cut(s)	68, 1050
HphI	GGTGA	5 cut(s)	563, 755, 793, 920, 1120
Hpy166II	GTNNAC	3 cut(s)	274, 298, 634
Hpy188I	TCNGA	8 cut(s)	38, 58, 183, 363, 591, 777, 876, 1102
Hpy8I	GTNNAC	3 cut(s)	274, 298, 634
HpyCH4III	ACNGT	3 cut(s)	239, 332, 943
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	2 cut(s)	305, 823
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	6 cut(s)	144, 564, 695, 934, 1060, 1093
Kpn2I	TCCGGA	1 cut(s)	67
Kzo9I	GATC	8 cut(s)	286, 403, 464, 598, 622, 966, 1015, 1039
LguI	GCTCTTC	1 cut(s)	1100
LmnI	GCTCC	3 cut(s)	39, 58, 577
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	3 cut(s)	712, 864, 901
MabI	ACCWGGT	1 cut(s)	1120
MaeI	CTAG	2 cut(s)	506, 678
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	3 cut(s)	75, 581, 743
MalI	GATC	8 cut(s)	288, 405, 466, 600, 624, 968, 1017, 1041
MboI	GATC	8 cut(s)	286, 403, 464, 598, 622, 966, 1015, 1039
MboII	GAAGA	3 cut(s)	350, 850, 1087
MflI	RGATCY	2 cut(s)	286, 1015
MluCI	AATT	2 cut(s)	125, 603
MlyI	GAGTC	1 cut(s)	274
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	9 cut(s)	152, 216, 390, 430, 699, 845, 882, 1007, 1096
MroI	TCCGGA	1 cut(s)	67
MseI	TTAA	5 cut(s)	351, 378, 866, 1010, 1135
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	713
MspI	CCGG	2 cut(s)	68, 1050
MspR9I	CCNGG	2 cut(s)	963, 1122
MvaI	CCWGG	2 cut(s)	963, 1122
NcoI	CCATGG	1 cut(s)	1056
NdeII	GATC	8 cut(s)	286, 403, 464, 598, 622, 966, 1015, 1039
NlaIII	CATG	6 cut(s)	144, 564, 695, 934, 1060, 1093
NlaIV	GGNNCC	4 cut(s)	35, 1017, 1054, 1062
NmuCI	GTSAC	2 cut(s)	581, 743
NspV	TTCGAA	1 cut(s)	90
PaeR7I	CTCGAG	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	1100
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PfeI	GAWTC	6 cut(s)	43, 184, 364, 567, 899, 1103
PkrI	GCNGC	3 cut(s)	33, 164, 916
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Psp6I	CCWGG	2 cut(s)	961, 1120
PspGI	CCWGG	2 cut(s)	961, 1120
PspN4I	GGNNCC	4 cut(s)	35, 1017, 1054, 1062
PspPI	GGNCC	2 cut(s)	4, 516
PsuI	RGATCY	2 cut(s)	286, 1015
PvuII	CAGCTG	1 cut(s)	713
RseI	CAYNNNNRTG	1 cut(s)	590
SapI	GCTCTTC	1 cut(s)	1100
SaqAI	TTAA	5 cut(s)	351, 378, 866, 1010, 1135
SatI	GCNGC	3 cut(s)	32, 163, 915
Sau3AI	GATC	8 cut(s)	286, 403, 464, 598, 622, 966, 1015, 1039
Sau96I	GGNCC	2 cut(s)	4, 516
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	2 cut(s)	963, 1122
SexAI	ACCWGGT	1 cut(s)	1120
SfaNI	GCATC	3 cut(s)	712, 864, 901
SfcI	CTRYAG	1 cut(s)	760
Sfr274I	CTCGAG	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	90
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	2 cut(s)	282, 838
SmoI	CTYRAG	2 cut(s)	282, 838
Sse9I	AATT	2 cut(s)	125, 603
SsiI	CCGC	3 cut(s)	31, 576, 914
SspMI	CTAG	2 cut(s)	506, 678
StyD4I	CCNGG	2 cut(s)	961, 1120
StyI	CCWWGG	1 cut(s)	1056
TaaI	ACNGT	3 cut(s)	239, 332, 943
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	7 cut(s)	90, 118, 155, 283, 861, 897, 1108
TasI	AATT	2 cut(s)	125, 603
TauI	GCSGC	2 cut(s)	34, 917
TfiI	GAWTC	6 cut(s)	43, 184, 364, 567, 899, 1103
Tru1I	TTAA	5 cut(s)	351, 378, 866, 1010, 1135
Tru9I	TTAA	5 cut(s)	351, 378, 866, 1010, 1135
TscAI	CASTG	2 cut(s)	946, 997
TseFI	GTSAC	2 cut(s)	581, 743
TseI	GCWGC	1 cut(s)	162
Tsp45I	GTSAC	2 cut(s)	581, 743
TspDTI	ATGAA	2 cut(s)	608, 712
TspGWI	ACGGA	2 cut(s)	177, 1028
TspRI	CASTG	2 cut(s)	946, 997
VpaK11BI	GGWCC	1 cut(s)	4
XhoI	CTCGAG	1 cut(s)	282
XspI	CTAG	2 cut(s)	506, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.