Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009578.1

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Reverse (-)

21622 .. 23321

Gene Structure 1700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009578.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgggcctcggttgtggtgaacgatatgaggattgggaagaaaatggaatggtttggtcaccccggtgttttccttttcaagaccttttcatattggaaaacaacgatgccagcgatacagatgattacaatgatgagtattgtgatgatgatgtgcctgaggaggaaaacgacgcaatggatgaggactttctagtgaaacaaggggaagacggggatcctgaggatgtccctgaagctaatggtgatggaggaggtgatgatggggatggggatggcaacaaagatgatgatgataatgaggatacaaagaatgaagaagaggaagaagcagagaatgaagacgaggaagaagcagagaatgaacaagaggaagaagcagaaaaccagcacagaacccttgatctactcttatccagggtctccagtttgcatgaagagatgggagagtcacttacggattatgagaaattaatgattctcgagcttttcacacaagccaagaacttcatctccaacttggtcactggtaatagggatgaagatatactcaggcttattcatggtggagtccatgttgcagtgaaccataaccctatatgcctcgtgtattttaatggtatatatgaccagatggttgagctgaaacaaatgatttatcacacatattcagctgtgatgaggacatccaagagtagatggtctgaactgccaactgacattggtgagtcaatattgaaaaagtttgtaccgcccgtcttcgacgacatccttattttcaaacacattcttagctttagagctgtttaccacacatggagaactgctgcaaaagcgttttgttcgtacactcggtttcctcaaactccatggctcttggttcatactcgttgcaaatcgtccattgttgatccagaacagaaaaaggcactactagaattatggctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

36.39

Weight (kDa)

4.18

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	752
AclWI	GGATC	3 cut(s)	212, 225, 905
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	750, 848
AgsI	TTSAA	3 cut(s)	80, 739, 781
AjnI	CCWGG	1 cut(s)	416
AleI	CACNNNNGTG	1 cut(s)	64
AloI	GAACNNNNNNTCC	2 cut(s)	497, 529
AluBI	AGCT	6 cut(s)	239, 487, 643, 674, 795, 803
AluI	AGCT	6 cut(s)	239, 487, 643, 674, 795, 803
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	3 cut(s)	212, 225, 905
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	827
AseI	ATTAAT	1 cut(s)	473
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	5 cut(s)	29, 51, 257, 269, 737
AvaI	CYCGRG	1 cut(s)	482
AxyI	CCTNAGG	2 cut(s)	159, 222
BamHI	GGATCC	1 cut(s)	217
BauI	CACGAG	1 cut(s)	605
BbsI	GAAGAC	3 cut(s)	216, 348, 751
BbvI	GCAGC	1 cut(s)	814
BccI	CCATC	7 cut(s)	242, 257, 263, 269, 436, 628, 693
BciT130I	CCWGG	1 cut(s)	418
BciVI	GTATCC	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	2 cut(s)	194, 935
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	1 cut(s)	828
BlsI	GCNGC	1 cut(s)	829
Bme1390I	CCNGG	2 cut(s)	64, 418
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	2 cut(s)	64, 418
BmsI	GCATC	1 cut(s)	97
BpiI	GAAGAC	3 cut(s)	216, 348, 751
BpmI	CTGGAG	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	427
BsaJI	CCNNGG	4 cut(s)	7, 62, 417, 869
BsaXI	ACNNNNNCTCC	4 cut(s)	497, 527, 561, 591
Bse1I	ACTGG	2 cut(s)	426, 532
Bse21I	CCTNAGG	2 cut(s)	159, 222
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	418
BseDI	CCNNGG	4 cut(s)	7, 62, 417, 869
BseGI	GGATG	7 cut(s)	187, 232, 274, 280, 544, 686, 768
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	3 cut(s)	150, 213, 565
BseNI	ACTGG	2 cut(s)	426, 532
BseRI	GAGGAG	2 cut(s)	176, 267
BseXI	GCAGC	1 cut(s)	814
BshFI	GGCC	1 cut(s)	6
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	6
Bso31I	GGTCTC	1 cut(s)	427
BsoBI	CYCGRG	1 cut(s)	482
Bsp143I	GATC	3 cut(s)	217, 403, 910
Bsp19I	CCATGG	1 cut(s)	869
BspACI	CCGC	1 cut(s)	752
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	3 cut(s)	151, 214, 564
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	3 cut(s)	212, 225, 905
BspTNI	GGTCTC	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	426, 532
BssECI	CCNNGG	4 cut(s)	7, 62, 417, 869
BssMI	GATC	3 cut(s)	217, 403, 910
BssSI	CACGAG	1 cut(s)	605
BssT1I	CCWWGG	1 cut(s)	869
Bst2BI	CACGAG	1 cut(s)	605
Bst2UI	CCWGG	1 cut(s)	418
Bst6I	CTCTTC	2 cut(s)	315, 432
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	4 cut(s)	159, 222, 551, 791
BstDSI	CCRYGG	1 cut(s)	869
BstEII	GGTNACC	1 cut(s)	57
BstF5I	GGATG	7 cut(s)	187, 232, 274, 280, 544, 686, 768
BstKTI	GATC	3 cut(s)	220, 406, 913
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	3 cut(s)	217, 403, 910
BstMWI	GCNNNNNNNGC	1 cut(s)	833
BstNI	CCWGG	1 cut(s)	418
BstPI	GGTNACC	1 cut(s)	57
BstSCI	CCNGG	2 cut(s)	62, 416
BstV1I	GCAGC	1 cut(s)	814
BstV2I	GAAGAC	3 cut(s)	216, 348, 751
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
Bsu36I	CCTNAGG	2 cut(s)	159, 222
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	869
BtsCI	GGATG	7 cut(s)	187, 232, 274, 280, 544, 686, 768
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	2 cut(s)	525, 588
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	749, 847
CviAII	CATG	5 cut(s)	434, 563, 575, 816, 870
CviQI	GTAC	2 cut(s)	749, 847
DdeI	CTNAG	4 cut(s)	159, 222, 551, 791
DpnI	GATC	3 cut(s)	219, 405, 912
DpnII	GATC	3 cut(s)	217, 403, 910
Eam1104I	CTCTTC	2 cut(s)	315, 432
EarI	CTCTTC	2 cut(s)	315, 432
Eco130I	CCWWGG	1 cut(s)	869
Eco31I	GGTCTC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	255
Eco81I	CCTNAGG	2 cut(s)	159, 222
Eco88I	CYCGRG	1 cut(s)	482
Eco91I	GGTNACC	1 cut(s)	57
EcoO65I	GGTNACC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	869
ErhI	CCWWGG	1 cut(s)	869
FaeI	CATG	5 cut(s)	437, 566, 578, 819, 873
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	5 cut(s)	433, 562, 574, 815, 869
Fnu4HI	GCNGC	1 cut(s)	828
FokI	GGATG	7 cut(s)	194, 239, 281, 287, 551, 673, 755
Fsp4HI	GCNGC	1 cut(s)	828
FspBI	CTAG	2 cut(s)	194, 935
GluI	GCNGC	1 cut(s)	828
GsuI	CTGGAG	1 cut(s)	409
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	1 cut(s)	64
HgaI	GACGC	1 cut(s)	182
Hin1II	CATG	5 cut(s)	437, 566, 578, 819, 873
HinfI	GANTC	4 cut(s)	449, 478, 570, 728
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	5 cut(s)	29, 51, 257, 269, 737
Hpy166II	GTNNAC	4 cut(s)	20, 586, 808, 849
Hpy188I	TCNGA	1 cut(s)	706
Hpy188III	TCNNGA	4 cut(s)	80, 221, 482, 914
Hpy8I	GTNNAC	4 cut(s)	20, 586, 808, 849
Hpy99I	CGWCG	2 cut(s)	176, 767
HpyCH4V	TGCA	4 cut(s)	433, 581, 830, 894
HpyF10VI	GCNNNNNNNGC	1 cut(s)	833
HpyF3I	CTNAG	4 cut(s)	159, 222, 551, 791
Hsp92II	CATG	5 cut(s)	437, 566, 578, 819, 873
Kzo9I	GATC	3 cut(s)	217, 403, 910
Lsp1109I	GCAGC	1 cut(s)	814
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	2 cut(s)	194, 935
MaeIII	GTNAC	3 cut(s)	57, 450, 523
MalI	GATC	3 cut(s)	219, 405, 912
MboI	GATC	3 cut(s)	217, 403, 910
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	2 cut(s)	470, 938
MlyI	GAGTC	3 cut(s)	458, 579, 737
MmeI	TCCRAC	1 cut(s)	540
MseI	TTAA	2 cut(s)	473, 615
MslI	CAYNNNNRTG	1 cut(s)	64
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	2 cut(s)	64, 418
MvaI	CCWGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	1 cut(s)	833
NciI	CCSGG	1 cut(s)	64
NcoI	CCATGG	1 cut(s)	869
NdeII	GATC	3 cut(s)	217, 403, 910
NlaIII	CATG	5 cut(s)	437, 566, 578, 819, 873
NlaIV	GGNNCC	1 cut(s)	219
NmuCI	GTSAC	3 cut(s)	57, 450, 523
OliI	CACNNNNGTG	1 cut(s)	64
PaeR7I	CTCGAG	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	478
PkrI	GCNGC	1 cut(s)	829
PleI	GAGTC	3 cut(s)	457, 578, 736
PpsI	GAGTC	3 cut(s)	457, 578, 736
PshBI	ATTAAT	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	416
PspEI	GGTNACC	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	2 cut(s)	750, 848
RsaNI	GTAC	2 cut(s)	749, 847
RseI	CAYNNNNRTG	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	473, 615
SatI	GCNGC	1 cut(s)	828
Sau3AI	GATC	3 cut(s)	217, 403, 910
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	458, 579, 737
ScrFI	CCNGG	2 cut(s)	64, 418
SetI	ASST	8 cut(s)	87, 241, 259, 489, 645, 676, 797, 805
SfaNI	GCATC	1 cut(s)	97
Sfr274I	CTCGAG	1 cut(s)	482
SlaI	CTCGAG	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	2 cut(s)	470, 938
SsiI	CCGC	1 cut(s)	752
SspI	AATATT	1 cut(s)	735
SspMI	CTAG	2 cut(s)	194, 935
StyD4I	CCNGG	2 cut(s)	62, 416
StyI	CCWWGG	1 cut(s)	869
TaqI	TCGA	2 cut(s)	483, 762
TasI	AATT	2 cut(s)	470, 938
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	2 cut(s)	473, 615
Tru9I	TTAA	2 cut(s)	473, 615
TscAI	CASTG	2 cut(s)	532, 588
TseFI	GTSAC	3 cut(s)	57, 450, 523
TseI	GCWGC	1 cut(s)	827
Tsp45I	GTSAC	3 cut(s)	57, 450, 523
TspDTI	ATGAA	9 cut(s)	79, 330, 354, 378, 450, 499, 551, 555, 872
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	2 cut(s)	532, 588
VspI	ATTAAT	1 cut(s)	473
XhoI	CTCGAG	1 cut(s)	482
XspI	CTAG	2 cut(s)	194, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.