Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Reverse (-)

9752105 .. 9753270

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G006110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGTGAAGATCAAGGATCCCAATTTCTTGAAACTTTGTAAAACGTTCGAAGAGCTCAAAAAAATTATTGATGGAATCGACAGCAGAAGAAGGAGGTGGTCCGAGCTGCCGACTGACCTTGTAGAATTGATCTTGAAAAAGCTTATACCTTCTGAATTCGACCTCCTTGGCTTTAGAGACATCCTTTGCTCTAAACTCGTTTGTCATTCTTGGAGAAGTGTTGCAAAATCTTGTAGCTCTTACGCTCCTTTGTGTCAAACCCCATGGCTTCTGCTTCATCAGAATAACATATCCTCCCTTTTTGATCCTGCAGAAAAAAAGGTTTACAAAATCAGGAATGTCTATGAGAATTTTCCTTGTGCCAGGTGTGTGGGTTCATCACATGGGTGGATGATCATATTCTACGAAGACGTACATTCCCAAGAGTCAATGGCACATCTTTTTAATCCAATTTCAAGAAGTAGAATGCTACTTCCAAGCATTCAGACTCTTCAAAGTTACCGTATTTCTAAAGGTATTATTTCCTCCAATCCATTTACCAACAAAAACTTTTTTGTGGTAGTGGCATGTCATGGAGGACTTGCATTCTGTAAACATGAAGACAAATCATGGACTAAGTTCAATGATGCTCTTAGCTATCTCTATGACGATATTATGTTTTACAATGACAAGCTATTTGCATTGGCTATGGAGTCACTTGAGGTCTGGGACTACTCTGTTTCTCACATACCAGTTGATCATACCTATTTGGTGGAGTCATTGGGCGAGATCTTACGTGTGGGAAAAGGTGGACGACGTATTACTACACACTTTTTTGTGGAGAAGTTAAATTTGACCGATGGGAAGTGGGAGAAAGTGCAAAATTTAGGTGACCAAATTCTATTTTTGTTTCATAATCAGTTACTGTCACTACCTAACCAATGTTTCCTAGGATGTGAAGAAAACTCAATCTACTTCGGAACGAGTGATTGTGTCACACATTGTGGTCAAGAAATTGGAATATACAACCTTCAATACAACATGGTTCGTAGGATAGAGTCCATATGTATTCTAATTGGCGAACATCTCGAAGAACTAAAGCATTGTTATATTGCACAACCTGTTTGGATGGTTCCTAATCCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

375

Amino Acids

43.5

Weight (kDa)

6.9

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	100 - 336	1.6e-45	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	44
AclWI	GGATC	3 cut(s)	11, 24, 299
AcsI	RAATTY	5 cut(s)	155, 349, 829, 862, 876
AdeI	CACNNNGTG	1 cut(s)	983
AfaI	GTAC	1 cut(s)	414
AflIII	ACRYGT	1 cut(s)	775
AgsI	TTSAA	6 cut(s)	31, 136, 456, 494, 622, 1013
AjnI	CCWGG	1 cut(s)	362
AleI	CACNNNNGTG	1 cut(s)	385
AluBI	AGCT	6 cut(s)	55, 106, 142, 237, 636, 673
AluI	AGCT	6 cut(s)	55, 106, 142, 237, 636, 673
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	3 cut(s)	11, 24, 299
AlwNI	CAGNNNCTG	1 cut(s)	904
ApeKI	GCWGC	1 cut(s)	106
ApoI	RAATTY	5 cut(s)	155, 349, 829, 862, 876
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
AspA2I	CCTAGG	1 cut(s)	928
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	16, 881
AsuII	TTCGAA	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	99
AvrII	CCTAGG	1 cut(s)	928
BamHI	GGATCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	2 cut(s)	414, 606
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	93
BccI	CCATC	3 cut(s)	65, 833, 1102
BciT130I	CCWGG	1 cut(s)	364
BclI	TGATCA	2 cut(s)	393, 736
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	929
BfmI	CTRYAG	1 cut(s)	309
BglII	AGATCT	1 cut(s)	768
BisI	GCNGC	1 cut(s)	107
BlnI	CCTAGG	1 cut(s)	928
BlsI	GCNGC	1 cut(s)	108
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	2 cut(s)	18, 1113
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	1 cut(s)	616
BpiI	GAAGAC	2 cut(s)	414, 606
Bpu14I	TTCGAA	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	719
BsaAI	YACGTR	1 cut(s)	776
BsaJI	CCNNGG	4 cut(s)	166, 263, 928, 1121
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bse1I	ACTGG	1 cut(s)	731
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	4 cut(s)	166, 263, 928, 1121
BseGI	GGATG	4 cut(s)	180, 396, 938, 1113
BseNI	ACTGG	1 cut(s)	731
BseXI	GCAGC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	722
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	722
BsmI	GAATGC	3 cut(s)	471, 480, 584
Bsp119I	TTCGAA	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	7 cut(s)	9, 16, 129, 304, 393, 736, 768
Bsp19I	CCATGG	2 cut(s)	263, 1121
BspLI	GGNNCC	2 cut(s)	18, 1113
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	3 cut(s)	11, 24, 299
BspQI	GCTCTTC	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	731
BssECI	CCNNGG	4 cut(s)	166, 263, 928, 1121
BssMI	GATC	7 cut(s)	9, 16, 129, 304, 393, 736, 768
BssT1I	CCWWGG	4 cut(s)	166, 263, 928, 1121
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	2 cut(s)	503, 906
Bst6I	CTCTTC	2 cut(s)	45, 495
BstBAI	YACGTR	1 cut(s)	776
BstBI	TTCGAA	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	615, 632
BstDSI	CCRYGG	2 cut(s)	263, 1121
BstEII	GGTNACC	1 cut(s)	869
BstF5I	GGATG	4 cut(s)	180, 396, 938, 1113
BstKTI	GATC	7 cut(s)	12, 19, 132, 307, 396, 739, 771
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	7 cut(s)	9, 16, 129, 304, 393, 736, 768
BstNI	CCWGG	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	570
BstPI	GGTNACC	1 cut(s)	869
BstSCI	CCNGG	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	93
BstV2I	GAAGAC	2 cut(s)	414, 606
BstX2I	RGATCY	2 cut(s)	16, 768
BstXI	CCANNNNNNTGG	1 cut(s)	370
BstYI	RGATCY	2 cut(s)	16, 768
BtgI	CCRYGG	2 cut(s)	263, 1121
BtsCI	GGATG	4 cut(s)	180, 396, 938, 1113
CaiI	CAGNNNCTG	1 cut(s)	904
Cfr13I	GGNCC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	8 cut(s)	264, 383, 567, 572, 596, 609, 1021, 1122
CviJI	RGCY	9 cut(s)	55, 106, 142, 171, 237, 268, 636, 673, 686
CviKI_1	RGCY	9 cut(s)	55, 106, 142, 171, 237, 268, 636, 673, 686
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	2 cut(s)	615, 632
DpnI	GATC	7 cut(s)	11, 18, 131, 306, 395, 738, 770
DpnII	GATC	7 cut(s)	9, 16, 129, 304, 393, 736, 768
DraIII	CACNNNGTG	1 cut(s)	983
Eam1104I	CTCTTC	2 cut(s)	45, 495
EarI	CTCTTC	2 cut(s)	45, 495
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	4 cut(s)	166, 263, 928, 1121
Eco24I	GRGCYC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	55
Eco91I	GGTNACC	1 cut(s)	869
EcoICRI	GAGCTC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	869
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	362
EcoT14I	CCWWGG	4 cut(s)	166, 263, 928, 1121
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	4 cut(s)	166, 263, 928, 1121
FaeI	CATG	8 cut(s)	267, 386, 570, 575, 599, 612, 1024, 1125
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	8 cut(s)	263, 382, 566, 571, 595, 608, 1020, 1121
FauNDI	CATATG	1 cut(s)	1043
FbaI	TGATCA	2 cut(s)	393, 736
Fnu4HI	GCNGC	1 cut(s)	107
FokI	GGATG	4 cut(s)	167, 403, 945, 1120
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	107
FspBI	CTAG	1 cut(s)	929
GluI	GCNGC	1 cut(s)	107
Hin1II	CATG	8 cut(s)	267, 386, 570, 575, 599, 612, 1024, 1125
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	6 cut(s)	75, 425, 487, 692, 755, 1037
HphI	GGTGA	2 cut(s)	16, 881
Hpy166II	GTNNAC	3 cut(s)	325, 593, 791
Hpy188I	TCNGA	5 cut(s)	103, 154, 282, 486, 959
Hpy188III	TCNNGA	6 cut(s)	28, 133, 334, 456, 989, 1067
Hpy8I	GTNNAC	3 cut(s)	325, 593, 791
Hpy99I	CGWCG	1 cut(s)	798
HpyAV	CCTTC	3 cut(s)	84, 159, 1019
HpyCH4III	ACNGT	2 cut(s)	503, 906
HpyCH4IV	ACGT	4 cut(s)	44, 411, 775, 796
HpyCH4V	TGCA	6 cut(s)	224, 311, 584, 680, 859, 1094
HpyF3I	CTNAG	2 cut(s)	615, 632
HpySE526I	ACGT	4 cut(s)	44, 411, 775, 796
Hsp92II	CATG	8 cut(s)	267, 386, 570, 575, 599, 612, 1024, 1125
Ksp22I	TGATCA	2 cut(s)	393, 736
Kzo9I	GATC	7 cut(s)	9, 16, 129, 304, 393, 736, 768
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	7 cut(s)	319, 321, 349, 376, 691, 744, 1113
Lsp1109I	GCAGC	1 cut(s)	93
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	1 cut(s)	929
MaeII	ACGT	4 cut(s)	44, 411, 775, 796
MaeIII	GTNAC	6 cut(s)	497, 693, 869, 900, 906, 973
MalI	GATC	7 cut(s)	11, 18, 131, 306, 395, 738, 770
MboI	GATC	7 cut(s)	9, 16, 129, 304, 393, 736, 768
MboII	GAAGA	8 cut(s)	19, 62, 99, 419, 482, 611, 950, 1082
MflI	RGATCY	2 cut(s)	16, 768
MhlI	GDGCHC	1 cut(s)	57
MlyI	GAGTC	5 cut(s)	434, 481, 701, 764, 1046
MnlI	CCTC	6 cut(s)	87, 173, 304, 535, 569, 694
MseI	TTAA	2 cut(s)	444, 827
MslI	CAYNNNNRTG	1 cut(s)	385
MspR9I	CCNGG	1 cut(s)	364
Mva1269I	GAATGC	3 cut(s)	471, 480, 584
MvaI	CCWGG	1 cut(s)	364
NcoI	CCATGG	2 cut(s)	263, 1121
NdeI	CATATG	1 cut(s)	1043
NdeII	GATC	7 cut(s)	9, 16, 129, 304, 393, 736, 768
NlaIII	CATG	8 cut(s)	267, 386, 570, 575, 599, 612, 1024, 1125
NlaIV	GGNNCC	2 cut(s)	18, 1113
NmuCI	GTSAC	4 cut(s)	693, 869, 906, 973
NspI	RCATGY	1 cut(s)	570
NspV	TTCGAA	1 cut(s)	48
OliI	CACNNNNGTG	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	45
PctI	GAATGC	3 cut(s)	471, 480, 584
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	108
PleI	GAGTC	5 cut(s)	433, 481, 700, 763, 1045
PpsI	GAGTC	5 cut(s)	433, 481, 700, 763, 1045
Ppu21I	YACGTR	1 cut(s)	776
Psp124BI	GAGCTC	1 cut(s)	57
Psp1406I	AACGTT	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	362
PspEI	GGTNACC	1 cut(s)	869
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	18, 1113
PspPI	GGNCC	1 cut(s)	99
PstI	CTGCAG	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	904
PsuI	RGATCY	2 cut(s)	16, 768
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	444, 827
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	7 cut(s)	9, 16, 129, 304, 393, 736, 768
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	5 cut(s)	434, 481, 701, 764, 1046
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	616
SfcI	CTRYAG	1 cut(s)	309
SfuI	TTCGAA	1 cut(s)	48
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
SspMI	CTAG	1 cut(s)	929
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	4 cut(s)	166, 263, 928, 1121
TaaI	ACNGT	2 cut(s)	503, 906
TaiI	ACGT	4 cut(s)	47, 414, 778, 799
TaqI	TCGA	4 cut(s)	48, 78, 159, 1068
TaqII	GACCGA	1 cut(s)	851
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	2 cut(s)	444, 827
Tru9I	TTAA	2 cut(s)	444, 827
TseFI	GTSAC	4 cut(s)	693, 869, 906, 973
TseI	GCWGC	1 cut(s)	106
Tsp45I	GTSAC	4 cut(s)	693, 869, 906, 973
TspDTI	ATGAA	4 cut(s)	266, 366, 612, 881
VpaK11BI	GGWCC	1 cut(s)	99
XapI	RAATTY	5 cut(s)	155, 349, 829, 862, 876
XceI	RCATGY	1 cut(s)	570
XmaJI	CCTAGG	1 cut(s)	928
XspI	CTAG	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.