Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Reverse (-)

7522831 .. 7523979

Gene Structure 1149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGACACATAAGAAGCAGAAGAAGGAGATGAGCGATTCCGAGAAAAAGACATTCAATGAAGATTCGAAACATTCGATACTTGCCGTGGACCTGGTAAGATTGATCTTGGAACGCTTGAGCTTTGTTGATTTTCATCGAGCGAGATGCGTTTCTTCAATATGGTATATTGCTTCCAAAACAGTCATTGGAGTAACAAATCCAACAACTCCATGGCTCATCCTATTTCCAAAAGGAGATGTGGAAATAAAAAAAGATTCATGTAAGTTGTACGATCCTCATGAAAACAAAACCTACATAGTAAGAGACCTCGGGTTTGATTTAGTTACGAGTCGTTGTTTGGCTAGTTCCGGTAGCTGGTTCCTTATGTTAGACCATAGAACTGAATTTCATCTTTTGAATCTGTTTACTCGAGTGAGGATTCCTCTTCCGTCTCTAGAATCAACCCGTGGCAGCGATATTAAAATAGGCAATGCGGTTTTGTGGGTAGATGAACAAAGGAAAGATTACTTGGTTGTTTGGAATATCTCTAGCCTTTTTGGATATCACAAGAAAGGAGATGATAGGTGGAAAGTGTTTAAACCTTTAGAGAATGAACGTTGCATCATTGCTATGGTGTTTAAAGAAAACAAGCTTTACGTTCTTAGTGTAGATGGAAACGTCGATGTTTTTTATTTCTCCGGTAATGATTCTCCAGTGAGATGTGCAACTTTGCCATCTTCGCCATTGCGGAAGGGTCATAAAGTTGTTGTCACTTTGTCTGGAGAAGTTTTGATCATTGTAGCTAAAGTGGAACCATATCCTAGGACGAGATTATGCTTCTTCGCCGTCTACAAGATGGATCCTAAATCATCAAGATGGGAAACGATTAAGTCTCTAGCAGGCGAAGCATTGATTTTAGATCTAGGAATAACGGTTGAGGCGAAAGTGATGAAAAATTGCATATATTTTAGTAATGATCAGTTTCATAGATACAATGAGAATAGTCTATGGAATGTATCTAACAAGAGCGGTGTCTTCGTCTACCATTTTCGATCTGCTAATGTGGTCCAATTGGTTGAACTTCTTACTGCTTCTTCCAGGACCTCGAAAATACTTTTCAAGGATGCTCGTTGTTTTTTTCCCACTTTTACTTCAAAATGGTTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

382

Amino Acids

44.03

Weight (kDa)

9.31

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	89 - 341	7.1e-47	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1008
AccI	GTMKAC	2 cut(s)	828, 1020
AciI	CCGC	3 cut(s)	473, 727, 1008
AclI	AACGTT	1 cut(s)	595
AclWI	GGATC	3 cut(s)	266, 833, 846
AcsI	RAATTY	1 cut(s)	383
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	6 cut(s)	55, 156, 397, 1058, 1099, 1134
AjnI	CCWGG	2 cut(s)	90, 1076
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AluBI	AGCT	4 cut(s)	120, 354, 631, 782
AluI	AGCT	4 cut(s)	120, 354, 631, 782
Alw26I	GTCTC	3 cut(s)	297, 435, 876
AlwI	GGATC	3 cut(s)	266, 833, 846
Ama87I	CYCGRG	2 cut(s)	308, 408
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	1 cut(s)	383
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AspA2I	CCTAGG	1 cut(s)	800
AspS9I	GGNCC	3 cut(s)	88, 1045, 1080
AsuII	TTCGAA	1 cut(s)	65
AvaI	CYCGRG	2 cut(s)	308, 408
AvaII	GGWCC	3 cut(s)	88, 1045, 1080
AvrII	CCTAGG	1 cut(s)	800
BamHI	GGATCC	1 cut(s)	838
BbsI	GAAGAC	1 cut(s)	1006
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	4 cut(s)	644, 721, 829, 849
BceAI	ACGGC	2 cut(s)	68, 809
BcgI	CGANNNNNNTGC	2 cut(s)	126, 160
BciT130I	CCWGG	2 cut(s)	92, 1078
BclI	TGATCA	2 cut(s)	771, 955
BcoDI	GTCTC	3 cut(s)	297, 435, 876
BfaI	CTAG	6 cut(s)	342, 434, 528, 801, 875, 902
BglII	AGATCT	1 cut(s)	898
BisI	GCNGC	1 cut(s)	451
BlnI	CCTAGG	1 cut(s)	800
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	2 cut(s)	92, 1078
Bme18I	GGWCC	3 cut(s)	88, 1045, 1080
BmeT110I	CYCGRG	2 cut(s)	308, 408
BmgT120I	GGNCC	3 cut(s)	88, 1045, 1080
BmiI	GGNNCC	3 cut(s)	359, 792, 840
BmrFI	CCNGG	2 cut(s)	92, 1078
BmsI	GCATC	3 cut(s)	134, 609, 1093
BpiI	GAAGAC	1 cut(s)	1006
BplI	GAGNNNNNCTC	2 cut(s)	406, 438
BpmI	CTGGAG	2 cut(s)	675, 780
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	5 cut(s)	84, 209, 307, 445, 800
BsaWI	WCCGGW	2 cut(s)	347, 677
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse1I	ACTGG	1 cut(s)	692
Bse3DI	GCAATG	3 cut(s)	475, 603, 722
Bse8I	GATNNNNATC	1 cut(s)	132
BseBI	CCWGG	2 cut(s)	92, 1078
BseDI	CCNNGG	5 cut(s)	84, 209, 307, 445, 800
BseGI	GGATG	2 cut(s)	216, 1108
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMI	GCAATG	3 cut(s)	475, 603, 722
BseNI	ACTGG	1 cut(s)	692
BseXI	GCAGC	1 cut(s)	462
BsiHKCI	CYCGRG	2 cut(s)	308, 408
BsiSI	CCGG	2 cut(s)	348, 678
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	3 cut(s)	297, 435, 876
BsmBI	CGTCTC	1 cut(s)	435
Bso31I	GGTCTC	1 cut(s)	297
BsoBI	CYCGRG	2 cut(s)	308, 408
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	7 cut(s)	102, 271, 771, 838, 898, 955, 1031
Bsp19I	CCATGG	1 cut(s)	209
BspACI	CCGC	3 cut(s)	473, 727, 1008
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	359, 792, 840
BspPI	GGATC	3 cut(s)	266, 833, 846
BspT104I	TTCGAA	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	297
BsrBI	CCGCTC	1 cut(s)	1008
BsrDI	GCAATG	3 cut(s)	475, 603, 722
BsrI	ACTGG	1 cut(s)	692
BssECI	CCNNGG	5 cut(s)	84, 209, 307, 445, 800
BssMI	GATC	7 cut(s)	102, 271, 771, 838, 898, 955, 1031
BssT1I	CCWWGG	2 cut(s)	209, 800
Bst2UI	CCWGG	2 cut(s)	92, 1078
Bst4CI	ACNGT	2 cut(s)	181, 913
Bst6I	CTCTTC	1 cut(s)	429
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	880
BstDEI	CTNAG	1 cut(s)	641
BstDSI	CCRYGG	3 cut(s)	84, 209, 445
BstF5I	GGATG	2 cut(s)	216, 1108
BstKTI	GATC	7 cut(s)	105, 274, 774, 841, 901, 958, 1034
BstMAI	GTCTC	3 cut(s)	297, 435, 876
BstMBI	GATC	7 cut(s)	102, 271, 771, 838, 898, 955, 1031
BstMWI	GCNNNNNNNGC	2 cut(s)	718, 884
BstNI	CCWGG	2 cut(s)	92, 1078
BstSCI	CCNGG	2 cut(s)	90, 1076
BstV1I	GCAGC	1 cut(s)	462
BstV2I	GAAGAC	1 cut(s)	1006
BstX2I	RGATCY	2 cut(s)	838, 898
BstYI	RGATCY	2 cut(s)	838, 898
BtgI	CCRYGG	3 cut(s)	84, 209, 445
BtsCI	GGATG	2 cut(s)	216, 1108
BtsIMutI	CAGTG	1 cut(s)	699
Cac8I	GCNNGC	1 cut(s)	880
CciI	TCATGA	1 cut(s)	277
Cfr13I	GGNCC	3 cut(s)	88, 1045, 1080
CsiI	ACCWGGT	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	3 cut(s)	210, 258, 278
CviJI	RGCY	7 cut(s)	120, 214, 341, 354, 531, 631, 782
CviKI_1	RGCY	7 cut(s)	120, 214, 341, 354, 531, 631, 782
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	641
DpnI	GATC	7 cut(s)	104, 273, 773, 840, 900, 957, 1033
DpnII	GATC	7 cut(s)	102, 271, 771, 838, 898, 955, 1031
DraI	TTTAAA	2 cut(s)	577, 619
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	2 cut(s)	209, 800
Eco31I	GGTCTC	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	542
Eco47I	GGWCC	3 cut(s)	88, 1045, 1080
Eco88I	CYCGRG	2 cut(s)	308, 408
EcoO109I	RGGNCCY	1 cut(s)	1080
EcoRII	CCWGG	2 cut(s)	90, 1076
EcoRV	GATATC	1 cut(s)	542
EcoT14I	CCWWGG	2 cut(s)	209, 800
ErhI	CCWWGG	2 cut(s)	209, 800
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	3 cut(s)	213, 261, 281
FatI	CATG	3 cut(s)	209, 257, 277
FbaI	TGATCA	2 cut(s)	771, 955
FblI	GTMKAC	2 cut(s)	828, 1020
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	2 cut(s)	203, 1115
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	6 cut(s)	342, 434, 528, 801, 875, 902
GluI	GCNGC	1 cut(s)	451
GsuI	CTGGAG	2 cut(s)	675, 780
HapII	CCGG	2 cut(s)	348, 678
Hin1II	CATG	3 cut(s)	213, 261, 281
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	8 cut(s)	35, 62, 254, 328, 397, 418, 437, 686
HpaII	CCGG	2 cut(s)	348, 678
Hpy166II	GTNNAC	4 cut(s)	88, 405, 829, 1021
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	4 cut(s)	278, 434, 759, 852
Hpy8I	GTNNAC	4 cut(s)	88, 405, 829, 1021
Hpy99I	CGWCG	1 cut(s)	662
HpyAV	CCTTC	2 cut(s)	16, 724
HpyCH4III	ACNGT	2 cut(s)	181, 913
HpyCH4IV	ACGT	3 cut(s)	595, 636, 657
HpyCH4V	TGCA	3 cut(s)	600, 704, 939
HpyF10VI	GCNNNNNNNGC	2 cut(s)	718, 884
HpyF3I	CTNAG	1 cut(s)	641
HpySE526I	ACGT	3 cut(s)	595, 636, 657
Hsp92II	CATG	3 cut(s)	213, 261, 281
Ksp22I	TGATCA	2 cut(s)	771, 955
Kzo9I	GATC	7 cut(s)	102, 271, 771, 838, 898, 955, 1031
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	3 cut(s)	134, 609, 1093
MabI	ACCWGGT	1 cut(s)	90
MaeI	CTAG	6 cut(s)	342, 434, 528, 801, 875, 902
MaeII	ACGT	3 cut(s)	595, 636, 657
MaeIII	GTNAC	3 cut(s)	190, 322, 748
MalI	GATC	7 cut(s)	104, 273, 773, 840, 900, 957, 1033
MbiI	CCGCTC	1 cut(s)	1008
MboI	GATC	7 cut(s)	102, 271, 771, 838, 898, 955, 1031
MboII	GAAGA	8 cut(s)	31, 71, 144, 416, 708, 811, 1006, 1065
MfeI	CAATTG	1 cut(s)	1049
MflI	RGATCY	2 cut(s)	838, 898
MluCI	AATT	3 cut(s)	383, 934, 1049
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	6 cut(s)	285, 317, 408, 432, 910, 1093
MseI	TTAA	5 cut(s)	459, 576, 618, 867, 1147
MslI	CAYNNNNRTG	2 cut(s)	608, 853
MspI	CCGG	2 cut(s)	348, 678
MspR9I	CCNGG	2 cut(s)	92, 1078
MssI	GTTTAAAC	1 cut(s)	577
MunI	CAATTG	1 cut(s)	1049
MvaI	CCWGG	2 cut(s)	92, 1078
MwoI	GCNNNNNNNGC	2 cut(s)	718, 884
NcoI	CCATGG	1 cut(s)	209
NdeII	GATC	7 cut(s)	102, 271, 771, 838, 898, 955, 1031
NlaIII	CATG	3 cut(s)	213, 261, 281
NlaIV	GGNNCC	3 cut(s)	359, 792, 840
NmuCI	GTSAC	1 cut(s)	748
NspV	TTCGAA	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	408
PagI	TCATGA	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 917
PfeI	GAWTC	7 cut(s)	35, 62, 254, 397, 418, 437, 686
PfoI	TCCNGGA	1 cut(s)	1076
PkrI	GCNGC	1 cut(s)	452
PleI	GAGTC	1 cut(s)	336
PmeI	GTTTAAAC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	336
PpuMI	RGGWCCY	1 cut(s)	1080
Psp1406I	AACGTT	1 cut(s)	595
Psp5II	RGGWCCY	1 cut(s)	1080
Psp6I	CCWGG	2 cut(s)	90, 1076
PspGI	CCWGG	2 cut(s)	90, 1076
PspN4I	GGNNCC	3 cut(s)	359, 792, 840
PspPI	GGNCC	3 cut(s)	88, 1045, 1080
PspPPI	RGGWCCY	1 cut(s)	1080
PspXI	VCTCGAGB	1 cut(s)	408
PsuI	RGATCY	2 cut(s)	838, 898
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	2 cut(s)	608, 853
SaqAI	TTAA	5 cut(s)	459, 576, 618, 867, 1147
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	7 cut(s)	102, 271, 771, 838, 898, 955, 1031
Sau96I	GGNCC	3 cut(s)	88, 1045, 1080
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	2 cut(s)	92, 1078
SexAI	ACCWGGT	1 cut(s)	90
SfaNI	GCATC	3 cut(s)	134, 609, 1093
Sfr274I	CTCGAG	1 cut(s)	408
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	3 cut(s)	88, 1045, 1080
SlaI	CTCGAG	1 cut(s)	408
SmiMI	CAYNNNNRTG	2 cut(s)	608, 853
SmlI	CTYRAG	2 cut(s)	115, 408
SmoI	CTYRAG	2 cut(s)	115, 408
Sse9I	AATT	3 cut(s)	383, 934, 1049
SsiI	CCGC	3 cut(s)	473, 727, 1008
SspMI	CTAG	6 cut(s)	342, 434, 528, 801, 875, 902
StyD4I	CCNGG	2 cut(s)	90, 1076
StyI	CCWWGG	2 cut(s)	209, 800
TaaI	ACNGT	2 cut(s)	181, 913
TaiI	ACGT	3 cut(s)	598, 639, 660
TaqI	TCGA	7 cut(s)	65, 74, 136, 409, 660, 1030, 1085
TasI	AATT	3 cut(s)	383, 934, 1049
TfiI	GAWTC	7 cut(s)	35, 62, 254, 397, 418, 437, 686
Tru1I	TTAA	5 cut(s)	459, 576, 618, 867, 1147
Tru9I	TTAA	5 cut(s)	459, 576, 618, 867, 1147
TscAI	CASTG	1 cut(s)	699
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	1 cut(s)	450
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	9 cut(s)	72, 122, 246, 294, 377, 504, 606, 944, 953
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	699
VpaK11BI	GGWCC	3 cut(s)	88, 1045, 1080
XapI	RAATTY	1 cut(s)	383
XbaI	TCTAGA	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
XhoI	CTCGAG	1 cut(s)	408
XmaJI	CCTAGG	1 cut(s)	800
XmiI	GTMKAC	2 cut(s)	828, 1020
XspI	CTAG	6 cut(s)	342, 434, 528, 801, 875, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.