Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Reverse (-)

25977450 .. 25978706

Gene Structure 1257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCCTCACCAACGTTAGCCTTAGCCCAATCTCCTCCTCCGAAATCTCCAGCTGTTTCAGTCTCTCAAAGAAATCCTCATTGCTGGTCCAAGCTTCCTCTAGATCTCATGCAATTGGTTTTCGAACGCCTTGCATTTTTGGATTTCGAACGAGCTAAATCGGTTTGTTCATCTTGGCAATTTGGTTCAAAACAATCTAAGCCAAACAATCAGATCCCTTGGATGATTCTATTCCCAACAGACAAGAATTATTGTCTCTTGTTCAACCCTGAAGATAAAGAAAAACTCTACAAAACTCAACATCTCGGTGACGATTTTGCAAAGAGTATTGTTTTGGCGACTTATAGAAGTTGGCTTTTGATGCAACCTCGTTACGAAGAGTTAGAAGATCAAACTTTAGATCAAGAGTTTCATCTATATATTAAAGATCTTCTAACCTGCGAGAGGATCAATCTACCGGCTTTCGAATCAGATATTTTTGGACTTAGCCATCCGATATTATGGATAGATGACAAAACCAAAGACTACCTAGTTATAGGAACGATTAATCGAGAAACTATGGTTTCTTTCAAAAATGGAGATAACTCGTGGAAAAAATTCCCCGAGTTGCCAAAATCGTCATGTACCGACATGTGTTTGAACATGATATACAAAGATCACAAGCTTCATTATCTCGACTATTCCAACCTCTATATTTACGATTTTTTTGGAGAATTCCCGCGTGAAGCTTTCAGAATTAGCGTACGTGAGTTTGTAGGTTATGCAACAAATCCTTATGGATATGATGAATTTCCTGAAGTTCCACTGAAACTCAAATTGAATCGCTATATCTATAACATGATAGTCACTGTACGTGGAGATGTCTTAATTGTCGCGAGCTTACATTTCAGTATGGCTGAAACATGGGAATTTATAATCTGCAAGATGGATTCATCCAAGGTGAACAAATGGGAGGAAATTGTTTCTCTAGGCGATGAGTCAATTCTTCTAGGTTTGGGTATTACAGTGCTTGCTAAGGACATGGAAGGAATCACTTGTAACTCCATCTACTTCACTGCCGATGATTTTTATGAGGATTACGAAGAAAATGAAATCTTCATATACAATCTCGATACAAACAAGGTTGAAATCCCACACCAGTTTGTTTCTTCGTCCATCCCATCCGCTCATGCCCGTTGGTTCTTACCAACTTTCAAACGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

401

Amino Acids

46.83

Weight (kDa)

5.13

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	87 - 369	2.5e-39	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	914
Acc36I	ACCTGC	1 cut(s)	446
AccBSI	CCGCTC	1 cut(s)	1166
AccII	CGCG	2 cut(s)	721, 875
AciI	CCGC	2 cut(s)	719, 1164
AclI	AACGTT	1 cut(s)	14
AclWI	GGATC	2 cut(s)	208, 455
AcsI	RAATTY	4 cut(s)	596, 713, 788, 908
AcuI	CTGAAG	2 cut(s)	291, 816
AfaI	GTAC	3 cut(s)	625, 744, 852
AfiI	CCNNNNNNNGG	1 cut(s)	444
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	7 cut(s)	189, 265, 571, 640, 820, 1127, 1195
AluBI	AGCT	6 cut(s)	53, 94, 155, 664, 728, 879
AluI	AGCT	6 cut(s)	53, 94, 155, 664, 728, 879
Alw26I	GTCTC	2 cut(s)	67, 260
AlwI	GGATC	2 cut(s)	208, 455
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	4 cut(s)	596, 713, 788, 908
AseI	ATTAAT	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	596
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	320, 952
AsuII	TTCGAA	3 cut(s)	123, 147, 465
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	87
BauI	CACGAG	1 cut(s)	586
BccI	CCATC	5 cut(s)	498, 919, 1052, 1163, 1168
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BcoDI	GTCTC	2 cut(s)	67, 260
BfaI	CTAG	4 cut(s)	101, 530, 968, 989
BfuAI	ACCTGC	1 cut(s)	446
BglII	AGATCT	2 cut(s)	103, 427
Bme18I	GGWCC	1 cut(s)	87
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	87
BmsI	GCATC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	33
Bpu10I	CCTNAGC	2 cut(s)	22, 1014
Bpu14I	TTCGAA	3 cut(s)	123, 147, 465
BsaAI	YACGTR	2 cut(s)	746, 854
BsaJI	CCNNGG	2 cut(s)	218, 936
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	1138
Bse3DI	GCAATG	1 cut(s)	79
BseDI	CCNNGG	2 cut(s)	218, 936
BseGI	GGATG	5 cut(s)	228, 490, 932, 1155, 1160
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	1138
BseRI	GAGGAG	2 cut(s)	24, 27
Bsh1236I	CGCG	2 cut(s)	721, 875
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	1 cut(s)	458
BsiWI	CGTACG	1 cut(s)	742
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	2 cut(s)	67, 260
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	602
Bsp119I	TTCGAA	3 cut(s)	123, 147, 465
Bsp143I	GATC	7 cut(s)	103, 213, 388, 400, 427, 447, 655
Bsp68I	TCGCGA	1 cut(s)	875
BspACI	CCGC	2 cut(s)	719, 1164
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	2 cut(s)	721, 875
BspMI	ACCTGC	1 cut(s)	446
BspPI	GGATC	2 cut(s)	208, 455
BspT104I	TTCGAA	3 cut(s)	123, 147, 465
BsrBI	CCGCTC	1 cut(s)	1166
BsrDI	GCAATG	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	1138
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	2 cut(s)	218, 936
BssMI	GATC	7 cut(s)	103, 213, 388, 400, 427, 447, 655
BssSI	CACGAG	1 cut(s)	586
BssT1I	CCWWGG	2 cut(s)	218, 936
Bst2BI	CACGAG	1 cut(s)	586
Bst4CI	ACNGT	2 cut(s)	850, 1006
Bst6I	CTCTTC	1 cut(s)	372
BstBAI	YACGTR	2 cut(s)	746, 854
BstBI	TTCGAA	3 cut(s)	123, 147, 465
BstC8I	GCNNGC	2 cut(s)	877, 1011
BstDEI	CTNAG	4 cut(s)	22, 198, 485, 1014
BstENI	CCTNNNNNAGG	1 cut(s)	442
BstF5I	GGATG	5 cut(s)	228, 490, 932, 1155, 1160
BstFNI	CGCG	2 cut(s)	721, 875
BstKTI	GATC	7 cut(s)	106, 216, 391, 403, 430, 450, 658
BstMAI	GTCTC	2 cut(s)	67, 260
BstMBI	GATC	7 cut(s)	103, 213, 388, 400, 427, 447, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	634
BstUI	CGCG	2 cut(s)	721, 875
BstX2I	RGATCY	3 cut(s)	103, 213, 427
BstYI	RGATCY	3 cut(s)	103, 213, 427
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	987
BtsCI	GGATG	5 cut(s)	228, 490, 932, 1155, 1160
BtsI	GCAGTG	1 cut(s)	1053
BtsIMutI	CAGTG	4 cut(s)	803, 846, 1011, 1053
BtuMI	TCGCGA	1 cut(s)	875
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	2 cut(s)	877, 1011
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	3 cut(s)	624, 743, 851
CviAII	CATG	8 cut(s)	109, 621, 631, 643, 838, 903, 1021, 1169
CviQI	GTAC	3 cut(s)	624, 743, 851
DdeI	CTNAG	4 cut(s)	22, 198, 485, 1014
DpnI	GATC	7 cut(s)	105, 215, 390, 402, 429, 449, 657
DpnII	GATC	7 cut(s)	103, 213, 388, 400, 427, 447, 655
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	218, 936
Eco47I	GGWCC	1 cut(s)	87
Eco57I	CTGAAG	2 cut(s)	291, 816
Eco88I	CYCGRG	1 cut(s)	602
EcoNI	CCTNNNNNAGG	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	713
EcoT14I	CCWWGG	2 cut(s)	218, 936
ErhI	CCWWGG	2 cut(s)	218, 936
FaeI	CATG	8 cut(s)	112, 624, 634, 646, 841, 906, 1024, 1172
FatI	CATG	8 cut(s)	108, 620, 630, 642, 837, 902, 1020, 1168
FauI	CCCGC	1 cut(s)	726
FokI	GGATG	5 cut(s)	235, 477, 919, 1142, 1147
FspBI	CTAG	4 cut(s)	101, 530, 968, 989
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	458
Hin1II	CATG	8 cut(s)	112, 624, 634, 646, 841, 906, 1024, 1172
HindIII	AAGCTT	3 cut(s)	92, 662, 726
HinfI	GANTC	6 cut(s)	226, 467, 820, 929, 977, 1029
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	2 cut(s)	320, 952
Hpy166II	GTNNAC	1 cut(s)	943
Hpy188I	TCNGA	5 cut(s)	42, 213, 472, 495, 734
Hpy188III	TCNNGA	7 cut(s)	101, 404, 551, 674, 794, 874, 1109
Hpy8I	GTNNAC	1 cut(s)	943
HpyAV	CCTTC	1 cut(s)	1019
HpyCH4III	ACNGT	2 cut(s)	850, 1006
HpyCH4IV	ACGT	3 cut(s)	14, 745, 853
HpyCH4V	TGCA	6 cut(s)	112, 134, 320, 364, 764, 921
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	4 cut(s)	22, 198, 485, 1014
HpySE526I	ACGT	3 cut(s)	14, 745, 853
Hsp92II	CATG	8 cut(s)	112, 624, 634, 646, 841, 906, 1024, 1172
Kzo9I	GATC	7 cut(s)	103, 213, 388, 400, 427, 447, 655
LpnPI	CCDG	7 cut(s)	63, 70, 282, 451, 471, 807, 1151
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	4 cut(s)	101, 530, 968, 989
MaeII	ACGT	3 cut(s)	14, 745, 853
MaeIII	GTNAC	4 cut(s)	308, 371, 844, 1037
MalI	GATC	7 cut(s)	105, 215, 390, 402, 429, 449, 657
MbiI	CCGCTC	1 cut(s)	1166
MboI	GATC	7 cut(s)	103, 213, 388, 400, 427, 447, 655
MboII	GAAGA	8 cut(s)	284, 389, 398, 422, 977, 1087, 1094, 1140
MfeI	CAATTG	1 cut(s)	113
MflI	RGATCY	3 cut(s)	103, 213, 427
MlyI	GAGTC	1 cut(s)	986
MmeI	TCCRAC	1 cut(s)	708
MroXI	GAANNNNTTC	1 cut(s)	596
MseI	TTAA	4 cut(s)	423, 546, 866, 1204
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	1 cut(s)	458
MunI	CAATTG	1 cut(s)	113
MvnI	CGCG	2 cut(s)	721, 875
MwoI	GCNNNNNNNGC	1 cut(s)	361
NdeII	GATC	7 cut(s)	103, 213, 388, 400, 427, 447, 655
NlaIII	CATG	8 cut(s)	112, 624, 634, 646, 841, 906, 1024, 1172
NmuCI	GTSAC	2 cut(s)	308, 844
NruI	TCGCGA	1 cut(s)	875
NspI	RCATGY	1 cut(s)	634
NspV	TTCGAA	3 cut(s)	123, 147, 465
PciI	ACATGT	1 cut(s)	630
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	5 cut(s)	226, 467, 820, 929, 1029
Pfl23II	CGTACG	1 cut(s)	742
PleI	GAGTC	1 cut(s)	985
PpsI	GAGTC	1 cut(s)	985
Ppu21I	YACGTR	2 cut(s)	746, 854
PscI	ACATGT	1 cut(s)	630
PshBI	ATTAAT	1 cut(s)	546
PsiI	TTATAA	1 cut(s)	914
Psp1406I	AACGTT	1 cut(s)	14
PspLI	CGTACG	1 cut(s)	742
PspPI	GGNCC	1 cut(s)	87
PsrI	GAACNNNNNNTAC	2 cut(s)	632, 664
PsuI	RGATCY	3 cut(s)	103, 213, 427
PvuII	CAGCTG	1 cut(s)	53
RruI	TCGCGA	1 cut(s)	875
RsaI	GTAC	3 cut(s)	625, 744, 852
RsaNI	GTAC	3 cut(s)	624, 743, 851
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	4 cut(s)	423, 546, 866, 1204
Sau3AI	GATC	7 cut(s)	103, 213, 388, 400, 427, 447, 655
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	986
SfaNI	GCATC	1 cut(s)	351
SfuI	TTCGAA	3 cut(s)	123, 147, 465
SinI	GGWCC	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	306
SsiI	CCGC	2 cut(s)	719, 1164
SspMI	CTAG	4 cut(s)	101, 530, 968, 989
StyI	CCWWGG	2 cut(s)	218, 936
TaaI	ACNGT	2 cut(s)	850, 1006
TaiI	ACGT	3 cut(s)	17, 748, 856
TaqI	TCGA	6 cut(s)	123, 147, 465, 550, 675, 1110
TfiI	GAWTC	5 cut(s)	226, 467, 820, 929, 1029
Tru1I	TTAA	4 cut(s)	423, 546, 866, 1204
Tru9I	TTAA	4 cut(s)	423, 546, 866, 1204
TscAI	CASTG	4 cut(s)	810, 853, 1011, 1060
TseFI	GTSAC	2 cut(s)	308, 844
Tsp45I	GTSAC	2 cut(s)	308, 844
TspDTI	ATGAA	7 cut(s)	159, 401, 656, 801, 921, 1087, 1104
TspRI	CASTG	4 cut(s)	810, 853, 1011, 1060
VpaK11BI	GGWCC	1 cut(s)	87
VspI	ATTAAT	1 cut(s)	546
XagI	CCTNNNNNAGG	1 cut(s)	442
XapI	RAATTY	4 cut(s)	596, 713, 788, 908
XbaI	TCTAGA	1 cut(s)	100
XceI	RCATGY	1 cut(s)	634
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	4 cut(s)	101, 530, 968, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.