Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000481.1

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Reverse (-)

33910 .. 34281

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000481.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgatctttaatattgctgacaccactcctctgagatcagttggtcgtagctatttggtggagtcaatgggtgaagttctacgtgtggtcagaggtggtgagaatacaaacagtgcacactttctggtggaaaagctgaatgtgaaggataagaagtgggagaaagtgcaaaatttgggtgaccagagtttatttttgtttcatgatcagtcaatgtctttgcccaagacatgtttcttaggatctgaagacaattcaatctactttctacaaggtggatggcttgctagaggtgtgattaacagatacaatcttgaaaccactgaggtacgtaggataaactcattgtctgacctaattggcaaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

123

Amino Acids

13.98

Weight (kDa)

6.74

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	1 cut(s)	330
AflIII	ACRYGT	2 cut(s)	82, 230
AgsI	TTSAA	2 cut(s)	258, 317
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	2 cut(s)	51, 136
AluI	AGCT	2 cut(s)	51, 136
Alw21I	GWGCWC	1 cut(s)	118
Alw44I	GTGCAC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	250
ApaLI	GTGCAC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	172
AsuHPI	GGTGA	3 cut(s)	83, 110, 191
BaeGI	GKGCMC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	118
BccI	CCATC	1 cut(s)	273
BclI	TGATCA	1 cut(s)	205
BfaI	CTAG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	255
BsaAI	YACGTR	2 cut(s)	83, 332
BseGI	GGATG	1 cut(s)	284
BseMII	CTCAG	2 cut(s)	23, 315
BseRI	GAGGAG	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	4 cut(s)	3, 35, 205, 242
BspCNI	CTCAG	2 cut(s)	24, 316
BspHI	TCATGA	1 cut(s)	202
BspPI	GGATC	1 cut(s)	250
BssMI	GATC	4 cut(s)	3, 35, 205, 242
Bst4CI	ACNGT	1 cut(s)	113
BstBAI	YACGTR	2 cut(s)	83, 332
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	3 cut(s)	32, 238, 324
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	284
BstKTI	GATC	4 cut(s)	6, 38, 208, 245
BstMBI	GATC	4 cut(s)	3, 35, 205, 242
BstNSI	RCATGY	1 cut(s)	234
BstPI	GGTNACC	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	118
BstSNI	TACGTA	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	284
BtsIMutI	CAGTG	2 cut(s)	118, 321
Cac8I	GCNNGC	1 cut(s)	285
CciI	TCATGA	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	2 cut(s)	203, 231
CviJI	RGCY	3 cut(s)	51, 136, 283
CviKI_1	RGCY	3 cut(s)	51, 136, 283
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	3 cut(s)	32, 238, 324
DpnI	GATC	4 cut(s)	5, 37, 207, 244
DpnII	GATC	4 cut(s)	3, 35, 205, 242
Eco105I	TACGTA	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	267
Eco91I	GGTNACC	1 cut(s)	179
EcoO65I	GGTNACC	1 cut(s)	179
FaeI	CATG	2 cut(s)	206, 234
FaiI	YATR	2 cut(s)	204, 232
FatI	CATG	2 cut(s)	202, 230
FbaI	TGATCA	1 cut(s)	205
FokI	GGATG	1 cut(s)	291
FspBI	CTAG	1 cut(s)	288
Hin1II	CATG	2 cut(s)	206, 234
HinfI	GANTC	1 cut(s)	62
HphI	GGTGA	3 cut(s)	83, 110, 191
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	4 cut(s)	33, 92, 247, 352
Hpy188III	TCNNGA	2 cut(s)	203, 314
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	2 cut(s)	82, 331
HpyCH4V	TGCA	2 cut(s)	116, 169
HpyF3I	CTNAG	3 cut(s)	32, 238, 324
HpySE526I	ACGT	2 cut(s)	82, 331
Hsp92II	CATG	2 cut(s)	206, 234
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	3, 35, 205, 242
LpnPI	CCDG	2 cut(s)	110, 197
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	2 cut(s)	82, 331
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	4 cut(s)	5, 37, 207, 244
MboI	GATC	4 cut(s)	3, 35, 205, 242
MboII	GAAGA	1 cut(s)	260
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	3 cut(s)	172, 253, 357
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	4 cut(s)	39, 86, 284, 319
MseI	TTAA	2 cut(s)	9, 300
NdeII	GATC	4 cut(s)	3, 35, 205, 242
NlaIII	CATG	2 cut(s)	206, 234
NmuCI	GTSAC	1 cut(s)	179
NspI	RCATGY	1 cut(s)	234
PagI	TCATGA	1 cut(s)	202
PciI	ACATGT	1 cut(s)	230
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	2 cut(s)	83, 332
PscI	ACATGT	1 cut(s)	230
PspEI	GGTNACC	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	9, 300
Sau3AI	GATC	4 cut(s)	3, 35, 205, 242
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	9 cut(s)	53, 85, 97, 138, 277, 295, 330, 334, 357
SnaBI	TACGTA	1 cut(s)	332
Sse9I	AATT	3 cut(s)	172, 253, 357
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	2 cut(s)	85, 334
TasI	AATT	3 cut(s)	172, 253, 357
Tru1I	TTAA	2 cut(s)	9, 300
Tru9I	TTAA	2 cut(s)	9, 300
TscAI	CASTG	2 cut(s)	118, 328
TseFI	GTSAC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	191
TspRI	CASTG	2 cut(s)	118, 328
VneI	GTGCAC	1 cut(s)	114
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	234
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.