Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000658

Physical Location & Seq

Genomic Coordinates Forward (+)

1893259 .. 1894794

Gene Structure 1536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015855

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGATCGGCCTTCTTCAGACATAGTGATTGAAAACCACCATACCAAAAGAAAAGAGAAACGAAGGAGGACTGACGACGTGAACAAAGAAAGAAAGAGACAAAGAACGTCGACGGTCGATCACCTAACTAAAGAGAAGAAGATTAAAATGACTGAAGGAAGTACTGACGCCCACCCGATGAAACGAAGAGATAAAAGAACAAGAATGCCTGACGATGACGTGAACAAGGAAAGTAAGAGACAAAGAACCAAAGAGAAAAAGTTTGATCAGGTTCACACAGCCATCAAGCGTCTCATGTTCGCCGTCGACGGTGGTAGTAGGCCTGAAGATCTTGTAAGGTTGACCGATAGCAATCGTGAGGTGGTGGAGATCAATGAGCCCAAAAAAGCAAACTGGTGTGGGCTTCCCACTGAGCTTCCAGAGTGCATCTTGAAAAAGCTTATACCTTCTGAATTTGACATCCTTGGCTTTAGAGATATTCGATATTTTAAAGCCGTCTGTCATTCCTGGAGAACCGCCGCAATATCTTGTAGCTCTTACGTCCCGTTGCCTCGAACTCCGTGTCTCTTGCTTCATGAAAACAACTCCTCCCTTTTTGATCCCATAGGAAAGAAGGAATACCCTCCTCGACCACCTCGGCATATTAAAGACTCTCCTAACGATGGACGGGCCGACGGACGGATTGAAGATTCCTATTTGGTGGAGTCATTGACGGGTGATATTTTACGTGTGGGAAAAAGTGTGAAAAGAAGAGGTATGCATGGGACTTCACGGTTTTGTGTGGAAAAGTTAAACTTAGCGGAAAGCAAATGGAAAAAGGTGCAAAGTTTAGGCGACCAGAGCTTATACTTGTTTCGTGAACATGTAATGTCGTTGCCGAACCCATGTTTCTTAGGATGTGAGAAAAACTCAATTTACTTCGCAACAACAAAAGTTGAAGAATATGGAATATACAACCTTGATAAACGCAAAGTAATTAGGAAGAAAGAGTCATTTAGTGAAAATGTACAATTGAATGCTTGCCGTAAACCATTTTGGGTTGTTCCTAATCCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

353

Amino Acids

41.04

Weight (kDa)

9.62

Isoelectric Point (pI)

58.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	212 - 319	1.5e-15	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10110 AT1G27540 AT1G27540 AT1G27540 AT1G27580 AT1G67160 AT1G69090 AT2G03560 AT2G03580 AT2G03610 AT2G04810 AT2G04830 AT2G04840 AT2G05970 AT2G14290 AT2G14500 AT2G24080 AT2G33190 AT2G33200 AT3G03726 AT3G03726 AT3G03730 AT3G22333 AT3G22337 AT3G22345 AT4G10820 AT4G12810 AT4G12820 AT4G14165 AT4G17565 AT4G22035 AT4G22060 AT4G22165 AT4G22170 AT4G22180 AT4G22660 AT5G14160 AT5G25290 AT5G25300 AT5G38270 AT5G66830
fragaria_vesca	FvH4_1g02012 FvH4_1g02041 FvH4_1g02212 FvH4_1g02521 FvH4_1g02622 FvH4_1g23804 FvH4_7g23891
rosa_chinensis	RchiOBHm_Chr6g0254461 RchiOBHm_Chr6g0254471 RchiOBHm_Chr6g0254481
rosa_laevigata	RLG00000014912 RLG00000015833 RLG00000015855
rosa_multiflora	Rmu_sc0002296.1_g000011 Rmu_sc0009578.1_g000007 Rmu_sc0009578.1_g000009 Rmu_sc0017669.1_g000012 Rmu_ssc0000481.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018640 Rroxscaffold_2G00153700 Rroxscaffold_7G00210770
rosa_rugosa	Rorug01G0474100.1 Rorug01G0474200
rosa_samantha	Rh2BG027100 Rh2DG027600 Rh2DG027700 Rh5AG407300 Rh5BG420500 Rh6AG069500 Rh6AG069700 Rh6BG062100 Rh6BG062300
rosa_wichuraiana	Rw2G002180 Rw5G038360 Rw6G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	110, 306
AciI	CCGC	3 cut(s)	516, 519, 800
AclWI	GGATC	2 cut(s)	12, 593
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	2 cut(s)	174, 345
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	2 cut(s)	163, 1008
AfiI	CCNNNNNNNGG	2 cut(s)	662, 678
AflIII	ACRYGT	2 cut(s)	727, 862
AgsI	TTSAA	5 cut(s)	32, 433, 686, 938, 1015
AjiI	CACGTC	2 cut(s)	79, 220
AjnI	CCWGG	1 cut(s)	506
AluBI	AGCT	4 cut(s)	415, 439, 534, 843
AluI	AGCT	4 cut(s)	415, 439, 534, 843
Alw26I	GTCTC	4 cut(s)	91, 232, 296, 569
AlwI	GGATC	2 cut(s)	12, 593
AoxI	GGCC	3 cut(s)	8, 320, 669
ApoI	RAATTY	1 cut(s)	452
ArsI	GACNNNNNNTTYG	2 cut(s)	547, 579
AspS9I	GGNCC	1 cut(s)	669
AsuHPI	GGTGA	2 cut(s)	113, 728
BanII	GRGCYC	1 cut(s)	381
BccI	CCATC	2 cut(s)	290, 656
BceAI	ACGGC	3 cut(s)	287, 479, 1008
BciT130I	CCWGG	1 cut(s)	508
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	4 cut(s)	91, 232, 296, 569
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	508
BmgBI	CACGTC	2 cut(s)	79, 220
BmgT120I	GGNCC	1 cut(s)	669
BmrFI	CCNGG	1 cut(s)	508
BmsI	GCATC	1 cut(s)	435
BplI	GAGNNNNNCTC	2 cut(s)	893, 925
BpmI	CTGGAG	1 cut(s)	529
BsaAI	YACGTR	1 cut(s)	728
BsaBI	GATNNNNATC	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	463, 635, 1052
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	2 cut(s)	662, 678
Bse1I	ACTGG	1 cut(s)	398
Bse8I	GATNNNNATC	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	508
BseDI	CCNNGG	3 cut(s)	463, 635, 1052
BseGI	GGATG	2 cut(s)	459, 902
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	662, 678
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	2 cut(s)	577, 615
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	10, 322, 671
BsiEI	CGRYCG	1 cut(s)	117
BslFI	GGGAC	2 cut(s)	527, 778
BslI	CCNNNNNNNGG	2 cut(s)	662, 678
BsmAI	GTCTC	4 cut(s)	91, 232, 296, 569
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	527, 778
BsmI	GAATGC	2 cut(s)	210, 1021
BsnI	GGCC	3 cut(s)	10, 322, 671
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp1407I	TGTACA	1 cut(s)	1006
Bsp143I	GATC	6 cut(s)	4, 118, 265, 328, 369, 598
Bsp19I	CCATGG	1 cut(s)	1052
BspACI	CCGC	3 cut(s)	516, 519, 800
BspANI	GGCC	3 cut(s)	10, 322, 671
BspCNI	CTCAG	1 cut(s)	403
BspHI	TCATGA	1 cut(s)	574
BspPI	GGATC	2 cut(s)	12, 593
BsrGI	TGTACA	1 cut(s)	1006
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	3 cut(s)	463, 635, 1052
BssMI	GATC	6 cut(s)	4, 118, 265, 328, 369, 598
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	463, 1052
Bst2UI	CCWGG	1 cut(s)	508
Bst4CI	ACNGT	3 cut(s)	115, 311, 774
Bst6I	CTCTTC	2 cut(s)	181, 745
BstACI	GRCGYC	1 cut(s)	168
BstAUI	TGTACA	1 cut(s)	1006
BstBAI	YACGTR	1 cut(s)	728
BstC8I	GCNNGC	1 cut(s)	1021
BstDEI	CTNAG	3 cut(s)	411, 796, 892
BstDSI	CCRYGG	1 cut(s)	1052
BstF5I	GGATG	2 cut(s)	459, 902
BstKTI	GATC	6 cut(s)	7, 121, 268, 331, 372, 601
BstMAI	GTCTC	4 cut(s)	91, 232, 296, 569
BstMBI	GATC	6 cut(s)	4, 118, 265, 328, 369, 598
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	840
BstNI	CCWGG	1 cut(s)	508
BstNSI	RCATGY	1 cut(s)	866
BstSCI	CCNGG	1 cut(s)	506
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	3 cut(s)	10, 322, 671
BtgI	CCRYGG	1 cut(s)	1052
BtrI	CACGTC	2 cut(s)	79, 220
BtsCI	GGATG	2 cut(s)	459, 902
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	1021
CciI	TCATGA	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	669
CseI	GACGC	2 cut(s)	176, 278
Csp6I	GTAC	2 cut(s)	162, 1007
CviAII	CATG	6 cut(s)	295, 575, 761, 863, 885, 1053
CviQI	GTAC	2 cut(s)	162, 1007
DdeI	CTNAG	3 cut(s)	411, 796, 892
DpnI	GATC	6 cut(s)	6, 120, 267, 330, 371, 600
DpnII	GATC	6 cut(s)	4, 118, 265, 328, 369, 598
DraI	TTTAAA	1 cut(s)	490
Eam1104I	CTCTTC	2 cut(s)	181, 745
EarI	CTCTTC	2 cut(s)	181, 745
Eco130I	CCWWGG	2 cut(s)	463, 1052
Eco147I	AGGCCT	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	381
Eco57I	CTGAAG	2 cut(s)	174, 345
EcoRII	CCWGG	1 cut(s)	506
EcoT14I	CCWWGG	2 cut(s)	463, 1052
EcoT22I	ATGCAT	1 cut(s)	762
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	2 cut(s)	463, 1052
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	6 cut(s)	298, 578, 764, 866, 888, 1056
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FaqI	GGGAC	2 cut(s)	527, 778
FatI	CATG	6 cut(s)	294, 574, 760, 862, 884, 1052
FbaI	TGATCA	1 cut(s)	265
FblI	GTMKAC	2 cut(s)	110, 306
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	2 cut(s)	446, 909
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	1 cut(s)	519
GluI	GCNGC	1 cut(s)	519
GsuI	CTGGAG	1 cut(s)	529
HaeIII	GGCC	3 cut(s)	10, 322, 671
HgaI	GACGC	2 cut(s)	176, 278
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	6 cut(s)	298, 578, 764, 866, 888, 1056
HincII	GTYRAC	3 cut(s)	111, 307, 342
HindII	GTYRAC	3 cut(s)	111, 307, 342
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	4 cut(s)	650, 689, 704, 989
HphI	GGTGA	2 cut(s)	113, 728
Hpy166II	GTNNAC	8 cut(s)	82, 111, 223, 274, 307, 342, 860, 1028
Hpy188I	TCNGA	2 cut(s)	19, 451
Hpy188III	TCNNGA	5 cut(s)	356, 419, 430, 575, 857
Hpy8I	GTNNAC	8 cut(s)	82, 111, 223, 274, 307, 342, 860, 1028
Hpy99I	CGWCG	6 cut(s)	80, 112, 115, 308, 311, 677
HpyAV	CCTTC	5 cut(s)	21, 57, 149, 456, 607
HpyCH4III	ACNGT	3 cut(s)	115, 311, 774
HpyCH4IV	ACGT	5 cut(s)	78, 107, 219, 540, 727
HpyCH4V	TGCA	3 cut(s)	426, 760, 823
HpyF10VI	GCNNNNNNNGC	1 cut(s)	840
HpyF3I	CTNAG	3 cut(s)	411, 796, 892
HpySE526I	ACGT	5 cut(s)	78, 107, 219, 540, 727
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	6 cut(s)	298, 578, 764, 866, 888, 1056
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	6 cut(s)	4, 118, 265, 328, 369, 598
LpnPI	CCDG	8 cut(s)	222, 254, 336, 379, 432, 493, 520, 851
LweI	GCATC	1 cut(s)	435
MaeII	ACGT	5 cut(s)	78, 107, 219, 540, 727
MalI	GATC	6 cut(s)	6, 120, 267, 330, 371, 600
MboI	GATC	6 cut(s)	4, 118, 265, 328, 369, 598
MboII	GAAGA	9 cut(s)	6, 148, 151, 198, 338, 698, 762, 950, 994
MfeI	CAATTG	1 cut(s)	1010
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	4 cut(s)	452, 912, 975, 1010
MlyI	GAGTC	3 cut(s)	644, 713, 998
MnlI	CCTC	8 cut(s)	60, 352, 561, 598, 633, 636, 645, 746
Mph1103I	ATGCAT	1 cut(s)	762
MseI	TTAA	4 cut(s)	144, 489, 645, 791
MspR9I	CCNGG	1 cut(s)	508
MunI	CAATTG	1 cut(s)	1010
Mva1269I	GAATGC	2 cut(s)	210, 1021
MvaI	CCWGG	1 cut(s)	508
MwoI	GCNNNNNNNGC	1 cut(s)	840
NcoI	CCATGG	1 cut(s)	1052
NdeII	GATC	6 cut(s)	4, 118, 265, 328, 369, 598
NlaIII	CATG	6 cut(s)	298, 578, 764, 866, 888, 1056
NmeAIII	GCCGAG	1 cut(s)	616
NsiI	ATGCAT	1 cut(s)	762
NspI	RCATGY	1 cut(s)	866
PagI	TCATGA	1 cut(s)	574
PceI	AGGCCT	1 cut(s)	322
PciI	ACATGT	1 cut(s)	862
PctI	GAATGC	2 cut(s)	210, 1021
PfeI	GAWTC	1 cut(s)	689
PfoI	TCCNGGA	1 cut(s)	506
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	3 cut(s)	644, 712, 997
PpsI	GAGTC	3 cut(s)	644, 712, 997
Ppu21I	YACGTR	1 cut(s)	728
PscI	ACATGT	1 cut(s)	862
Psp6I	CCWGG	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	506
PspPI	GGNCC	1 cut(s)	669
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	2 cut(s)	163, 1008
RsaNI	GTAC	2 cut(s)	162, 1007
SalI	GTCGAC	2 cut(s)	109, 305
SaqAI	TTAA	4 cut(s)	144, 489, 645, 791
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	6 cut(s)	4, 118, 265, 328, 369, 598
Sau96I	GGNCC	1 cut(s)	669
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	3 cut(s)	644, 713, 998
ScrFI	CCNGG	1 cut(s)	508
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	1 cut(s)	435
SgrDI	CGTCGACG	2 cut(s)	109, 305
Sse9I	AATT	4 cut(s)	452, 912, 975, 1010
SseBI	AGGCCT	1 cut(s)	322
SsiI	CCGC	3 cut(s)	516, 519, 800
StuI	AGGCCT	1 cut(s)	322
StyD4I	CCNGG	1 cut(s)	506
StyI	CCWWGG	2 cut(s)	463, 1052
TaaI	ACNGT	3 cut(s)	115, 311, 774
TaiI	ACGT	5 cut(s)	81, 110, 222, 543, 730
TaqI	TCGA	6 cut(s)	110, 117, 306, 481, 553, 628
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	4 cut(s)	452, 912, 975, 1010
TatI	WGTACW	2 cut(s)	161, 1006
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	1 cut(s)	689
Tru1I	TTAA	4 cut(s)	144, 489, 645, 791
Tru9I	TTAA	4 cut(s)	144, 489, 645, 791
TscAI	CASTG	1 cut(s)	415
TspDTI	ATGAA	3 cut(s)	194, 563, 591
TspGWI	ACGGA	3 cut(s)	549, 690, 694
TspRI	CASTG	1 cut(s)	415
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	1 cut(s)	866
XmiI	GTMKAC	2 cut(s)	110, 306
ZrmI	AGTACT	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.