AT2G04810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000658
Physical Location & Seq
Forward (+)
1688773 .. 1689966
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04810.1

Sequence Viewer

Length: 1194 bp
ATGGAGACGTGTAACGGCTTGATGAGAAAGAATAAGAGACAAAAAGTGTCTAGAAATAGTGATTGGTCCAAGCTTTGTCCCGATGTTTTGCGGAAGATATACGAAACCTTAAGGAGCCCTGTTGATTCTCACCGCGCAAAAATCGTTTGCTCGAATTGGTATTCCGTTTGGAAAACATGCGTGAAGAGGCCTCTATGTCCACTGAGGATAATTCACCAAGGCGATTCTCCCACCGTAGGAGACGGCAACAGAAAACTCATGGGATTCTCCTACAACAGCTATTGTATGGCTAGCTCCGGAAACTGGCTCCTGATGGTTGATCGTTGTCTCAAATTCTATATTTATAACTTGTTGACGAAGGAAAGGATCGATCTTCCATCGATGGAGTCAAAAATACGTGGCGGGCAAGTAAGCTTCAAATCTAAAAGCAACAATTACAATTTTGGATACTTGGTCGGGCCTTCTCGTAAGGATGATATAGTGCCGTATGACTATGAAGCCGTTGAATGGAAAAAATCATTAGCTGTTCTGTGGGTAGACGAGACAACAGGAGATTATGCAGTTGCTTGGACTTTTATGCGACAATACTTGTTCTCATACATAAAAGGAGATTATTCTTGGTGTAATCTGAATCATAATGGGAAAAGTTTGGTTTTGTTTGATATGGCTTGTGAGAACAATAAGCTTTATTTGTTGACAATGGATCATCACATCAAGATTTTCAATTTCTATGGAGATTTTTTAACAGGAGAACAAAACCTGTATCCGTTTAACTTCGTTGAGGATCCGTCGGAATACGTTTGGAAGAGGAAGATAGTGATTCGGAGATCAGGAGAGGTACTGATAGTCTTGAGCTTGAAAAAAAAAGTGCAAAATGAAGAGAAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTCGCAAGTGGGAAAGAGTTTATTGTATTGGAGATGAGATGTTGATTTTTGGTCGTGGGGTTACAGCTCTTGCTCTTGAAGATCTTGATGATGGGATAAAGAGTAATTCAATCTATTTCGTCGGCGAAGATGTTTGGCCAGATCATCAAGAACATGAGCATCGTGTTTCAAATTGCGGTTTCTTCGATATTGCCACAAGTAAGATCGAATGGCCTAAGAAAATCTATTGTTTCATTAATCAAAATCAGTGGTTTGTTGGGGGAGTTGCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

397

Amino Acids

46.61

Weight (kDa)

8.73

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 92 - 360 1.3e-41 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AccI GTMKAC 1 cut(s) 537
AccII CGCG 1 cut(s) 135
AccIII TCCGGA 1 cut(s) 296
AciI CCGC 4 cut(s) 91, 133, 402, 1095
AclWI GGATC 4 cut(s) 374, 711, 779, 792
AcoI YGGCCR 1 cut(s) 1055
AcsI RAATTY 1 cut(s) 332
AfaI GTAC 1 cut(s) 840
AfiI CCNNNNNNNGG 3 cut(s) 236, 303, 507
AflII CTTAAG 1 cut(s) 109
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 7 cut(s) 418, 506, 724, 859, 998, 1029, 1089
AjiI CACGTC 1 cut(s) 9
AjuI GAANNNNNNNTTGG 2 cut(s) 46, 78
AluBI AGCT 8 cut(s) 73, 279, 294, 414, 524, 685, 855, 986
AluI AGCT 8 cut(s) 73, 279, 294, 414, 524, 685, 855, 986
Alw26I GTCTC 4 cut(s) 31, 234, 332, 536
AlwI GGATC 4 cut(s) 374, 711, 779, 792
Aor13HI TCCGGA 1 cut(s) 296
AoxI GGCC 4 cut(s) 188, 458, 1055, 1130
ApoI RAATTY 1 cut(s) 332
AseI ATTAAT 1 cut(s) 1155
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 66, 458
AsuHPI GGTGA 2 cut(s) 122, 206
AsuNHI GCTAGC 1 cut(s) 290
AvaII GGWCC 1 cut(s) 66
BalI TGGCCA 1 cut(s) 1057
BamHI GGATCC 1 cut(s) 784
BanII GRGCYC 1 cut(s) 119
BccI CCATC 4 cut(s) 307, 376, 385, 1004
BceAI ACGGC 4 cut(s) 31, 259, 469, 485
BciVI GTATCC 2 cut(s) 440, 774
BcoDI GTCTC 4 cut(s) 31, 234, 332, 536
BfaI CTAG 2 cut(s) 51, 291
BfrI CTTAAG 1 cut(s) 109
BfuI GTATCC 2 cut(s) 440, 774
BglII AGATCT 1 cut(s) 1000
Bme18I GGWCC 1 cut(s) 66
BmgBI CACGTC 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 66, 458
BmiI GGNNCC 3 cut(s) 116, 308, 786
BmsI GCATC 1 cut(s) 1087
BmtI GCTAGC 1 cut(s) 294
BpuEI CTTGAG 2 cut(s) 871, 935
Bsa29I ATCGAT 2 cut(s) 369, 380
BsaAI YACGTR 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 303, 507
Bse1I ACTGG 1 cut(s) 308
BseAI TCCGGA 1 cut(s) 296
BseCI ATCGAT 2 cut(s) 369, 380
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 3 cut(s) 236, 303, 507
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 4 cut(s) 190, 460, 1057, 1132
BshVI ATCGAT 2 cut(s) 369, 380
BsiSI CCGG 1 cut(s) 297
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 3 cut(s) 236, 303, 507
BsmAI GTCTC 4 cut(s) 31, 234, 332, 536
BsmBI CGTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 4 cut(s) 190, 460, 1057, 1132
Bsp1286I GDGCHC 1 cut(s) 119
Bsp13I TCCGGA 1 cut(s) 296
Bsp143I GATC 9 cut(s) 319, 366, 370, 703, 784, 827, 1000, 1060, 1122
BspACI CCGC 4 cut(s) 91, 133, 402, 1095
BspANI GGCC 4 cut(s) 190, 460, 1057, 1132
BspCNI CTCAG 1 cut(s) 195
BspDI ATCGAT 2 cut(s) 369, 380
BspEI TCCGGA 1 cut(s) 296
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 3 cut(s) 116, 308, 786
BspOI GCTAGC 1 cut(s) 294
BspPI GGATC 4 cut(s) 374, 711, 779, 792
BspTI CTTAAG 1 cut(s) 109
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 9 cut(s) 319, 366, 370, 703, 784, 827, 1000, 1060, 1122
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 3 cut(s) 179, 800, 873
BstAFI CTTAAG 1 cut(s) 109
BstBAI YACGTR 1 cut(s) 398
BstC8I GCNNGC 2 cut(s) 292, 404
BstDEI CTNAG 2 cut(s) 203, 1134
BstF5I GGATG 1 cut(s) 478
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 9 cut(s) 322, 369, 373, 706, 787, 830, 1003, 1063, 1125
BstMAI GTCTC 4 cut(s) 31, 234, 332, 536
BstMBI GATC 9 cut(s) 319, 366, 370, 703, 784, 827, 1000, 1060, 1122
BstNSI RCATGY 1 cut(s) 180
BstUI CGCG 1 cut(s) 135
BstX2I RGATCY 2 cut(s) 784, 1000
BstYI RGATCY 2 cut(s) 784, 1000
Bsu15I ATCGAT 2 cut(s) 369, 380
BsuI GTATCC 2 cut(s) 440, 774
BsuRI GGCC 4 cut(s) 190, 460, 1057, 1132
BsuTUI ATCGAT 2 cut(s) 369, 380
BtrI CACGTC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 478
BtsIMutI CAGTG 2 cut(s) 200, 1172
Cac8I GCNNGC 2 cut(s) 292, 404
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 66, 458
ClaI ATCGAT 2 cut(s) 369, 380
Csp6I GTAC 1 cut(s) 839
CspCI CAANNNNNGTGG 2 cut(s) 1148, 1183
CviAII CATG 3 cut(s) 177, 259, 1073
CviQI GTAC 1 cut(s) 839
DdeI CTNAG 2 cut(s) 203, 1134
DpnI GATC 9 cut(s) 321, 368, 372, 705, 786, 829, 1002, 1062, 1124
DpnII GATC 9 cut(s) 319, 366, 370, 703, 784, 827, 1000, 1060, 1122
EaeI YGGCCR 1 cut(s) 1055
Eam1104I CTCTTC 3 cut(s) 179, 800, 873
EarI CTCTTC 3 cut(s) 179, 800, 873
Eco130I CCWWGG 1 cut(s) 217
Eco147I AGGCCT 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 3 cut(s) 180, 262, 1076
FalI AAGNNNNNCTT 2 cut(s) 870, 902
FaqI GGGAC 1 cut(s) 63
FatI CATG 3 cut(s) 176, 258, 1072
FauI CCCGC 1 cut(s) 395
FblI GTMKAC 1 cut(s) 537
FokI GGATG 1 cut(s) 485
FriOI GRGCYC 1 cut(s) 119
FspBI CTAG 2 cut(s) 51, 291
GlaI GCGC 1 cut(s) 136
HaeIII GGCC 4 cut(s) 190, 460, 1057, 1132
HapII CCGG 1 cut(s) 297
HhaI GCGC 1 cut(s) 137
Hin1II CATG 3 cut(s) 180, 262, 1076
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 2 cut(s) 354, 696
HindII GTYRAC 2 cut(s) 354, 696
HindIII AAGCTT 3 cut(s) 71, 412, 683
HinfI GANTC 8 cut(s) 125, 224, 264, 386, 631, 820, 910, 919
HpaII CCGG 1 cut(s) 297
HphI GGTGA 2 cut(s) 122, 206
Hpy166II GTNNAC 4 cut(s) 200, 354, 538, 696
Hpy188I TCNGA 3 cut(s) 630, 793, 825
Hpy8I GTNNAC 4 cut(s) 200, 354, 538, 696
Hpy99I CGWCG 2 cut(s) 793, 1043
HpyAV CCTTC 2 cut(s) 352, 471
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 3 cut(s) 8, 397, 798
HpyCH4V TGCA 2 cut(s) 560, 871
HpyF3I CTNAG 2 cut(s) 203, 1134
HpySE526I ACGT 3 cut(s) 8, 397, 798
Hsp92II CATG 3 cut(s) 180, 262, 1076
HspAI GCGC 1 cut(s) 135
Kpn2I TCCGGA 1 cut(s) 296
Kzo9I GATC 9 cut(s) 319, 366, 370, 703, 784, 827, 1000, 1060, 1122
LmnI GCTCC 3 cut(s) 114, 299, 312
LpnPI CCDG 9 cut(s) 132, 289, 310, 323, 534, 732, 773, 816, 1071
LweI GCATC 1 cut(s) 1087
MaeI CTAG 2 cut(s) 51, 291
MaeII ACGT 3 cut(s) 8, 397, 798
MaeIII GTNAC 2 cut(s) 11, 979
MalI GATC 9 cut(s) 321, 368, 372, 705, 786, 829, 1002, 1062, 1124
MboI GATC 9 cut(s) 319, 366, 370, 703, 784, 827, 1000, 1060, 1122
MboII GAAGA 9 cut(s) 106, 196, 365, 817, 823, 890, 1010, 1058, 1093
MflI RGATCY 2 cut(s) 784, 1000
MhlI GDGCHC 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 1057
MluCI AATT 8 cut(s) 154, 210, 332, 433, 439, 724, 1024, 1090
MluNI TGGCCA 1 cut(s) 1057
MlyI GAGTC 2 cut(s) 395, 928
MmeI TCCRAC 1 cut(s) 771
MnlI CCTC 6 cut(s) 180, 198, 201, 775, 801, 829
Mox20I TGGCCA 1 cut(s) 1057
MroI TCCGGA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 1057
MseI TTAA 5 cut(s) 110, 743, 771, 903, 1155
Msp20I TGGCCA 1 cut(s) 1057
MspCI CTTAAG 1 cut(s) 109
MspI CCGG 1 cut(s) 297
MvnI CGCG 1 cut(s) 135
NdeII GATC 9 cut(s) 319, 366, 370, 703, 784, 827, 1000, 1060, 1122
NheI GCTAGC 1 cut(s) 290
NlaIII CATG 3 cut(s) 180, 262, 1076
NlaIV GGNNCC 3 cut(s) 116, 308, 786
NspI RCATGY 1 cut(s) 180
PceI AGGCCT 1 cut(s) 190
PfeI GAWTC 6 cut(s) 125, 224, 264, 631, 820, 910
PleI GAGTC 2 cut(s) 394, 927
PpsI GAGTC 2 cut(s) 394, 927
Ppu21I YACGTR 1 cut(s) 398
PshBI ATTAAT 1 cut(s) 1155
PsiI TTATAA 1 cut(s) 345
PspN4I GGNNCC 3 cut(s) 116, 308, 786
PspPI GGNCC 2 cut(s) 66, 458
PsuI RGATCY 2 cut(s) 784, 1000
RsaI GTAC 1 cut(s) 840
RsaNI GTAC 1 cut(s) 839
SaqAI TTAA 5 cut(s) 110, 743, 771, 903, 1155
Sau3AI GATC 9 cut(s) 319, 366, 370, 703, 784, 827, 1000, 1060, 1122
Sau96I GGNCC 2 cut(s) 66, 458
SchI GAGTC 2 cut(s) 395, 928
SduI GDGCHC 1 cut(s) 119
SfaNI GCATC 1 cut(s) 1087
SinI GGWCC 1 cut(s) 66
SmlI CTYRAG 3 cut(s) 109, 850, 914
SmoI CTYRAG 3 cut(s) 109, 850, 914
Sse9I AATT 8 cut(s) 154, 210, 332, 433, 439, 724, 1024, 1090
SseBI AGGCCT 1 cut(s) 190
SsiI CCGC 4 cut(s) 91, 133, 402, 1095
SspMI CTAG 2 cut(s) 51, 291
StuI AGGCCT 1 cut(s) 190
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 3 cut(s) 11, 400, 801
TaqI TCGA 5 cut(s) 152, 369, 380, 1104, 1125
TasI AATT 8 cut(s) 154, 210, 332, 433, 439, 724, 1024, 1090
TfiI GAWTC 6 cut(s) 125, 224, 264, 631, 820, 910
Tru1I TTAA 5 cut(s) 110, 743, 771, 903, 1155
Tru9I TTAA 5 cut(s) 110, 743, 771, 903, 1155
TscAI CASTG 2 cut(s) 207, 1172
TspDTI ATGAA 4 cut(s) 510, 891, 923, 1141
TspGWI ACGGA 3 cut(s) 154, 756, 777
TspRI CASTG 2 cut(s) 207, 1172
Vha464I CTTAAG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 66
VspI ATTAAT 1 cut(s) 1155
XapI RAATTY 1 cut(s) 332
XbaI TCTAGA 1 cut(s) 50
XceI RCATGY 1 cut(s) 180
XmiI GTMKAC 1 cut(s) 537
XspI CTAG 2 cut(s) 51, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.