Rw5G038360

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
67623417 .. 67625006
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G038360.1

Sequence Viewer

Length: 1590 bp
ATGGATTTGCCTTCTTCAGATATAGTGACTGAAGACCACCATACCAAAAGAAAAGAGAAACGAAGGAGGACTGACGACGTAAACAAAGAAAGAAAGAGACAGAGAACGTCGACGGTCGACCACCTGACTGAAGAGAACAAGATTAAAAGGACTGAAGGAAGTAATGACGCCCACCCGATGAAACGAAAAGATAAAAGAACAAGAATGCCTGACAACGACCTGAAAAAGGGAAATAAGAGACAAAGAACCAAAGAGAAAAAGTTTGATCAGGTTCACACAGCCATCAAGCGCCTCATGTCCGCCGTCGACTGTGGTAGTAGGCCTGAAGATCTTGTAAGGCTGACCGATGGCAACCCTGAGGTGGTGGAGATCAGTGAGCCCAAGTGCGTTGAGTATTTGAACAAGATACATGACCAAATTGTTGAGCTAAAACAGAATAGTATCAAAAAAAGAAAAGCAAACTGGTCTGGGCTTCCCACTGAGCTTCTAGAGTCCATCTTGAAAAAGCTTATACCTTCTGAATTTGACATCCTTGGCTTTAGACATATCCTATATTTTAAAGCCGTTTGTCATTCCTGGAGAACCGCTGCAAAATCTTGTAGCTCTTACGTTCCGTTGCCTCGAACTCCGTGTCTCTTGCATCATGAAAACAACTCCTCCCTTTTTGATCCCATAGGAAAGAAGGTGCACAAGATCAGGAACATCTGTGACTTTTTTTCTGAAGCCACCTGGGTCGGTTCATCATATGGGTGGATTGTCATGTTTTACCAAGACGAAGATTTGAAAGAATCAATGGCACATGTTTTTAACCCGATTTCAAGAGCCAGCATTCCGATCCCAGGCACAAAGACCCTTCCTAACTACAACCTTGGAGACCAAATTTCTAAAGCTATTGTTTCGTCTAATCCGTCTAGCTACAACCTTGGAGATCAAATTCCTAAAGGTATTGTTTCGTCCAATCGATCTAGCAACAAGAACTATTTTGTGGTAGTGGAATATGATGGAAATCTAGCATACTATAAGCTTGGAGACGGAGACAAATCATGGAGAAAGTTGGGTGATAATAAGGGTTACAATCCCAAATGTATTATGTTTCACGATGACCAATTAATTGCATTGTCCCAGAGGTTAACTGAGATTTGGAACTTCAAGAAATACCCTCCTCAACAACCTCGGCGTATTGAAGACTCTCCTCCCTACAGATGGGTTGAAGATACCAATTTGGTTGAAGATACTTATTTGGTGGAGTCATTGACGGGTGATATTTTACGTGTGGGAAGAAGTATGCAAAAAGGTAGGGATATGACTTCACAGTTTTTTGTGGAAAAGTTAAACTTGGCAGGAACATGGGAAAATGGGCAAAATTTAGGCGACCAGAGCTTATACCTGTTTCGTGAACATTTAATGTCATTGCCGAACCCATGTTTCTTAGGATGTGAGAAAAACTCAATCTACTTCACAACAACAAAAAACGAATATGGAATATACAACCTTGATGAAGCTATAGAAAGTAGGAAAGGTTCATTTAGTGAAAATGTAAATTTTAATGCTTCTCGTAAACCCTTATGGATTGTTCCTAATCCATGGTGA

Protein Analysis

529

Amino Acids

61.17

Weight (kDa)

9.07

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 222 - 497 2.2e-32 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 110, 117, 306
AciI CCGC 2 cut(s) 300, 585
AclWI GGATC 2 cut(s) 662, 829
AcsI RAATTY 5 cut(s) 521, 879, 933, 1363, 1540
AcuI CTGAAG 5 cut(s) 51, 150, 174, 345, 741
AcyI GRCGYC 1 cut(s) 168
AfiI CCNNNNNNNGG 4 cut(s) 226, 361, 839, 1203
AflIII ACRYGT 2 cut(s) 799, 1270
AgsI TTSAA 8 cut(s) 400, 502, 784, 819, 1150, 1184, 1211, 1229
AjnI CCWGG 3 cut(s) 575, 728, 838
AluBI AGCT 9 cut(s) 427, 484, 508, 603, 890, 915, 1024, 1380, 1502
AluI AGCT 9 cut(s) 427, 484, 508, 603, 890, 915, 1024, 1380, 1502
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 6 cut(s) 91, 232, 638, 867, 1023, 1029
Alw44I GTGCAC 1 cut(s) 686
AlwI GGATC 2 cut(s) 662, 829
AoxI GGCC 1 cut(s) 320
ApaLI GTGCAC 1 cut(s) 686
ApeKI GCWGC 1 cut(s) 587
ApoI RAATTY 5 cut(s) 521, 879, 933, 1363, 1540
ArsI GACNNNNNNTTYG 2 cut(s) 616, 648
AseI ATTAAT 1 cut(s) 1109
AspLEI GCGC 1 cut(s) 291
AsuHPI GGTGA 2 cut(s) 1070, 1271
AxyI CCTNAGG 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 690
BanII GRGCYC 1 cut(s) 381
BbsI GAAGAC 2 cut(s) 39, 1191
Bbv12I GWGCWC 1 cut(s) 690
BbvI GCAGC 1 cut(s) 574
BccI CCATC 5 cut(s) 290, 341, 503, 995, 1197
BceAI ACGGC 2 cut(s) 287, 548
BciT130I CCWGG 3 cut(s) 577, 730, 840
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 6 cut(s) 91, 232, 638, 867, 1023, 1029
BfaI CTAG 4 cut(s) 488, 912, 966, 1010
BfmI CTRYAG 2 cut(s) 1198, 1503
BfoI RGCGCY 1 cut(s) 292
BglII AGATCT 1 cut(s) 328
BisI GCNGC 1 cut(s) 588
BlsI GCNGC 1 cut(s) 589
Bme1390I CCNGG 3 cut(s) 577, 730, 840
BmrFI CCNGG 3 cut(s) 577, 730, 840
BmsI GCATC 1 cut(s) 649
BpiI GAAGAC 2 cut(s) 39, 1191
BplI GAGNNNNNCTC 2 cut(s) 1430, 1462
BpmI CTGGAG 1 cut(s) 598
Bsa29I ATCGAT 1 cut(s) 961
BsaAI YACGTR 1 cut(s) 1271
BsaBI GATNNNNATC 1 cut(s) 1005
BsaHI GRCGYC 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 867
BsaJI CCNNGG 7 cut(s) 532, 729, 838, 868, 922, 1172, 1583
BsaXI ACNNNNNCTCC 2 cut(s) 641, 671
Bsc4I CCNNNNNNNGG 4 cut(s) 226, 361, 839, 1203
Bse1I ACTGG 1 cut(s) 467
Bse21I CCTNAGG 1 cut(s) 357
Bse3DI GCAATG 1 cut(s) 1409
Bse8I GATNNNNATC 1 cut(s) 1005
BseBI CCWGG 3 cut(s) 577, 730, 840
BseCI ATCGAT 1 cut(s) 961
BseDI CCNNGG 7 cut(s) 532, 729, 838, 868, 922, 1172, 1583
BseGI GGATG 2 cut(s) 528, 1439
BseJI GATNNNNATC 1 cut(s) 1005
BseLI CCNNNNNNNGG 4 cut(s) 226, 361, 839, 1203
BseMI GCAATG 1 cut(s) 1409
BseMII CTCAG 3 cut(s) 348, 471, 1125
BseNI ACTGG 1 cut(s) 467
BseRI GAGGAG 3 cut(s) 646, 1152, 1182
BseSI GKGCMC 1 cut(s) 690
BseXI GCAGC 1 cut(s) 574
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 322
BshVI ATCGAT 1 cut(s) 961
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 690
BslFI GGGAC 1 cut(s) 1105
BslI CCNNNNNNNGG 4 cut(s) 226, 361, 839, 1203
BsmAI GTCTC 6 cut(s) 91, 232, 638, 867, 1023, 1029
BsmBI CGTCTC 1 cut(s) 1023
BsmFI GGGAC 1 cut(s) 1105
BsmI GAATGC 2 cut(s) 210, 828
BsnI GGCC 1 cut(s) 322
Bso31I GGTCTC 1 cut(s) 867
Bsp1286I GDGCHC 2 cut(s) 381, 690
Bsp143I GATC 8 cut(s) 265, 328, 369, 667, 693, 834, 928, 962
Bsp19I CCATGG 1 cut(s) 1583
BspACI CCGC 2 cut(s) 300, 585
BspANI GGCC 1 cut(s) 322
BspCNI CTCAG 3 cut(s) 349, 472, 1126
BspDI ATCGAT 1 cut(s) 961
BspHI TCATGA 1 cut(s) 643
BspPI GGATC 2 cut(s) 662, 829
BspTNI GGTCTC 1 cut(s) 867
BsrDI GCAATG 1 cut(s) 1409
BsrI ACTGG 1 cut(s) 467
BssECI CCNNGG 7 cut(s) 532, 729, 838, 868, 922, 1172, 1583
BssMI GATC 8 cut(s) 265, 328, 369, 667, 693, 834, 928, 962
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 4 cut(s) 532, 868, 922, 1583
Bst2UI CCWGG 3 cut(s) 577, 730, 840
Bst4CI ACNGT 3 cut(s) 115, 311, 1314
Bst6I CTCTTC 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 1271
BstC8I GCNNGC 1 cut(s) 826
BstDEI CTNAG 4 cut(s) 357, 480, 1134, 1429
BstDSI CCRYGG 1 cut(s) 1583
BstENI CCTNNNNNAGG 1 cut(s) 224
BstF5I GGATG 2 cut(s) 528, 1439
BstH2I RGCGCY 1 cut(s) 292
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 8 cut(s) 268, 331, 372, 670, 696, 837, 931, 965
BstMAI GTCTC 6 cut(s) 91, 232, 638, 867, 1023, 1029
BstMBI GATC 8 cut(s) 265, 328, 369, 667, 693, 834, 928, 962
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 1377
BstNI CCWGG 3 cut(s) 577, 730, 840
BstNSI RCATGY 1 cut(s) 803
BstSCI CCNGG 3 cut(s) 575, 728, 838
BstSFI CTRYAG 2 cut(s) 1198, 1503
BstSLI GKGCMC 1 cut(s) 690
BstV1I GCAGC 1 cut(s) 574
BstV2I GAAGAC 2 cut(s) 39, 1191
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
Bsu15I ATCGAT 1 cut(s) 961
Bsu36I CCTNAGG 1 cut(s) 357
BsuRI GGCC 1 cut(s) 322
BsuTUI ATCGAT 1 cut(s) 961
BtgI CCRYGG 1 cut(s) 1583
BtsCI GGATG 2 cut(s) 528, 1439
BtsIMutI CAGTG 2 cut(s) 379, 477
Cac8I GCNNGC 1 cut(s) 826
CciI TCATGA 1 cut(s) 643
CfoI GCGC 1 cut(s) 291
ClaI ATCGAT 1 cut(s) 961
CseI GACGC 1 cut(s) 176
CviAII CATG 9 cut(s) 295, 410, 644, 760, 800, 1044, 1347, 1422, 1584
DdeI CTNAG 4 cut(s) 357, 480, 1134, 1429
DpnI GATC 8 cut(s) 267, 330, 371, 669, 695, 836, 930, 964
DpnII GATC 8 cut(s) 265, 328, 369, 667, 693, 834, 928, 962
DraI TTTAAA 1 cut(s) 559
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
EciI GGCGGA 1 cut(s) 289
Eco130I CCWWGG 4 cut(s) 532, 868, 922, 1583
Eco147I AGGCCT 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 867
Eco57I CTGAAG 5 cut(s) 51, 150, 174, 345, 741
Eco81I CCTNAGG 1 cut(s) 357
EcoNI CCTNNNNNAGG 1 cut(s) 224
EcoRII CCWGG 3 cut(s) 575, 728, 838
EcoT14I CCWWGG 4 cut(s) 532, 868, 922, 1583
EcoT38I GRGCYC 1 cut(s) 381
ErhI CCWWGG 4 cut(s) 532, 868, 922, 1583
Esp3I CGTCTC 1 cut(s) 1023
FaeI CATG 9 cut(s) 298, 413, 647, 763, 803, 1047, 1350, 1425, 1587
FalI AAGNNNNNCTT 2 cut(s) 1319, 1351
FaqI GGGAC 1 cut(s) 1105
FatI CATG 9 cut(s) 294, 409, 643, 759, 799, 1043, 1346, 1421, 1583
FauNDI CATATG 1 cut(s) 745
FbaI TGATCA 1 cut(s) 265
FblI GTMKAC 3 cut(s) 110, 117, 306
Fnu4HI GCNGC 1 cut(s) 588
FokI GGATG 2 cut(s) 515, 1446
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 1 cut(s) 588
FspBI CTAG 4 cut(s) 488, 912, 966, 1010
GlaI GCGC 1 cut(s) 290
GluI GCNGC 1 cut(s) 588
GsuI CTGGAG 1 cut(s) 598
HaeII RGCGCY 1 cut(s) 292
HaeIII GGCC 1 cut(s) 322
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 291
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 9 cut(s) 298, 413, 647, 763, 803, 1047, 1350, 1425, 1587
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HincII GTYRAC 4 cut(s) 111, 118, 307, 1131
HindII GTYRAC 4 cut(s) 111, 118, 307, 1131
HindIII AAGCTT 2 cut(s) 506, 1022
HinfI GANTC 4 cut(s) 491, 788, 1187, 1247
HpaI GTTAAC 1 cut(s) 1131
HphI GGTGA 2 cut(s) 1070, 1271
Hpy166II GTNNAC 9 cut(s) 82, 111, 118, 274, 307, 688, 1131, 1397, 1559
Hpy188I TCNGA 4 cut(s) 19, 520, 721, 834
Hpy188III TCNNGA 8 cut(s) 488, 499, 644, 697, 819, 1097, 1150, 1394
Hpy8I GTNNAC 9 cut(s) 82, 111, 118, 274, 307, 688, 1131, 1397, 1559
Hpy99I CGWCG 4 cut(s) 80, 112, 115, 308
HpyAV CCTTC 6 cut(s) 21, 57, 149, 525, 676, 863
HpyCH4III ACNGT 3 cut(s) 115, 311, 1314
HpyCH4IV ACGT 4 cut(s) 78, 107, 609, 1270
HpyCH4V TGCA 5 cut(s) 590, 640, 688, 1115, 1288
HpyF10VI GCNNNNNNNGC 1 cut(s) 1377
HpyF3I CTNAG 4 cut(s) 357, 480, 1134, 1429
HpySE526I ACGT 4 cut(s) 78, 107, 609, 1270
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 9 cut(s) 298, 413, 647, 763, 803, 1047, 1350, 1425, 1587
HspAI GCGC 1 cut(s) 289
Ksp22I TGATCA 1 cut(s) 265
KspAI GTTAAC 1 cut(s) 1131
Kzo9I GATC 8 cut(s) 265, 328, 369, 667, 693, 834, 928, 962
Lsp1109I GCAGC 1 cut(s) 574
LweI GCATC 1 cut(s) 649
MaeI CTAG 4 cut(s) 488, 912, 966, 1010
MaeII ACGT 4 cut(s) 78, 107, 609, 1270
MaeIII GTNAC 3 cut(s) 25, 707, 1070
MalI GATC 8 cut(s) 267, 330, 371, 669, 695, 836, 930, 964
MboI GATC 8 cut(s) 265, 328, 369, 667, 693, 834, 928, 962
MboII GAAGA 9 cut(s) 6, 44, 143, 338, 788, 1196, 1223, 1241, 1290
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 381, 690
MluCI AATT 9 cut(s) 417, 521, 879, 933, 1106, 1110, 1219, 1363, 1540
MlyI GAGTC 3 cut(s) 500, 1181, 1256
MseI TTAA 8 cut(s) 144, 558, 807, 1109, 1130, 1331, 1403, 1545
MslI CAYNNNNRTG 1 cut(s) 748
MspA1I CMGCKG 1 cut(s) 587
MspR9I CCNGG 3 cut(s) 577, 730, 840
Mva1269I GAATGC 2 cut(s) 210, 828
MvaI CCWGG 3 cut(s) 577, 730, 840
MwoI GCNNNNNNNGC 1 cut(s) 1377
NcoI CCATGG 1 cut(s) 1583
NdeI CATATG 1 cut(s) 745
NdeII GATC 8 cut(s) 265, 328, 369, 667, 693, 834, 928, 962
NlaIII CATG 9 cut(s) 298, 413, 647, 763, 803, 1047, 1350, 1425, 1587
NmeAIII GCCGAG 1 cut(s) 1153
NmuCI GTSAC 2 cut(s) 25, 707
NspI RCATGY 1 cut(s) 803
PagI TCATGA 1 cut(s) 643
PceI AGGCCT 1 cut(s) 322
PciI ACATGT 1 cut(s) 799
PcsI WCGNNNNNNNCGW 1 cut(s) 905
PctI GAATGC 2 cut(s) 210, 828
PfeI GAWTC 1 cut(s) 788
PfoI TCCNGGA 1 cut(s) 575
PkrI GCNGC 1 cut(s) 589
PleI GAGTC 3 cut(s) 499, 1181, 1255
PpsI GAGTC 3 cut(s) 499, 1181, 1255
Ppu21I YACGTR 1 cut(s) 1271
PscI ACATGT 1 cut(s) 799
PshBI ATTAAT 1 cut(s) 1109
Psp6I CCWGG 3 cut(s) 575, 728, 838
PspGI CCWGG 3 cut(s) 575, 728, 838
PsrI GAACNNNNNNTAC 2 cut(s) 1504, 1536
PsuI RGATCY 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 748
SalI GTCGAC 3 cut(s) 109, 116, 305
SaqAI TTAA 8 cut(s) 144, 558, 807, 1109, 1130, 1331, 1403, 1545
SatI GCNGC 1 cut(s) 588
Sau3AI GATC 8 cut(s) 265, 328, 369, 667, 693, 834, 928, 962
SchI GAGTC 3 cut(s) 500, 1181, 1256
ScrFI CCNGG 3 cut(s) 577, 730, 840
SduI GDGCHC 2 cut(s) 381, 690
SfaNI GCATC 1 cut(s) 649
SfcI CTRYAG 2 cut(s) 1198, 1503
SgrDI CGTCGACG 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 748
Sse9I AATT 9 cut(s) 417, 521, 879, 933, 1106, 1110, 1219, 1363, 1540
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 2 cut(s) 300, 585
SspMI CTAG 4 cut(s) 488, 912, 966, 1010
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 3 cut(s) 575, 728, 838
StyI CCWWGG 4 cut(s) 532, 868, 922, 1583
TaaI ACNGT 3 cut(s) 115, 311, 1314
TaiI ACGT 4 cut(s) 81, 110, 612, 1273
TaqI TCGA 5 cut(s) 110, 117, 306, 622, 961
TaqII GACCGA 1 cut(s) 359
TasI AATT 9 cut(s) 417, 521, 879, 933, 1106, 1110, 1219, 1363, 1540
TfiI GAWTC 1 cut(s) 788
Tru1I TTAA 8 cut(s) 144, 558, 807, 1109, 1130, 1331, 1403, 1545
Tru9I TTAA 8 cut(s) 144, 558, 807, 1109, 1130, 1331, 1403, 1545
TscAI CASTG 2 cut(s) 379, 484
TseFI GTSAC 2 cut(s) 25, 707
TseI GCWGC 1 cut(s) 587
Tsp45I GTSAC 2 cut(s) 25, 707
TspDTI ATGAA 5 cut(s) 194, 660, 729, 1512, 1512
TspGWI ACGGA 4 cut(s) 603, 618, 897, 1047
TspRI CASTG 2 cut(s) 379, 484
VneI GTGCAC 1 cut(s) 686
VspI ATTAAT 1 cut(s) 1109
XagI CCTNNNNNAGG 1 cut(s) 224
XapI RAATTY 5 cut(s) 521, 879, 933, 1363, 1540
XbaI TCTAGA 1 cut(s) 487
XceI RCATGY 1 cut(s) 803
XmiI GTMKAC 3 cut(s) 110, 117, 306
XspI CTAG 4 cut(s) 488, 912, 966, 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.