Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000283

Physical Location & Seq

Genomic Coordinates Forward (+)

12134973 .. 12136796

Gene Structure 1824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G23170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCTTCTCTGATCTCTTTTATCTTCCTTTTCCTTTTCTCATTCCTCACTAGCTTCAAAGCTTCCGCTCAAGATCCTTTTTACTTAAATCATTATTGTCCAAATACGACAACTTACTCAAGATTCAGCACTTACTCCACCAATCTCAGAACCCTTTTGTCCTCTTTTGCTTCCCGCAACGCCTCTTACTCCACCGGATTCCAGAACGTCACGGTGGGACAAACCCCCGACCTGGTCACCGGACTTTTCCTCTGCCGCGGAGACCTCTCGCCGGAAGTTTGCAGTAACTGCGTTGCCTTCTCCGTTGACGAAGCGTTAACTAGGTGTCCAAGTCAGAGAGAAGCTGTGTTCTATTACGAGGAGTGTATACTCAGATACTCTGACAAGAATATTCTATCGACGGCCATTACAAACGAAGGAGAATTTATCTTGAGTAACACCAACACTATTTCTCCTAATCAAAGTCAAATAAACCAGTTTATAGTTTTGGTGCAATCTAATATGAACCAAGCTGCCATGGAAGCAGCCAACAGTTCTAGAAAATTCTCTACGATAAAGACCGAATTGACCGAACTCCAGACTTTGTACGGGCTTGTTCAATGCACTCCTGATCTTACAAGTCAAGACTGTTTGAGATGTCTGACAAGATCCATCAATAGAATGCCACTTTCTAGAATTGGAGCAAGACAGTTTTGGCCAAGTTGTAATTCAAGGTACGAGCTTTACTCGTTCTACAACGAAACTACCATTGGAACACCATCTCCACCACCACCACCGTCGCCAAGCAGAGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005576 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0045087 GO:0046677 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

265

Amino Acids

29.72

Weight (kDa)

6.57

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	33 - 128	1.1e-24	Salt stress response/antifungal
Stress-antifung	PF01657	158 - 241	7.4e-10	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca	FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica	MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica	Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis	pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis	RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata	RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora	Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa	Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha	Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana	Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	367
AccII	CGCG	1 cut(s)	258
AciI	CCGC	4 cut(s)	66, 175, 256, 258
AclWI	GGATC	2 cut(s)	68, 642
AcoI	YGGCCR	2 cut(s)	402, 695
AcsI	RAATTY	2 cut(s)	422, 542
AfaI	GTAC	2 cut(s)	587, 716
AfiI	CCNNNNNNNGG	2 cut(s)	232, 271
AgsI	TTSAA	3 cut(s)	58, 599, 711
AjnI	CCWGG	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	4 cut(s)	691, 723, 732, 764
AloI	GAACNNNNNNTCC	2 cut(s)	745, 777
AluBI	AGCT	5 cut(s)	54, 62, 344, 512, 721
AluI	AGCT	5 cut(s)	54, 62, 344, 512, 721
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	2 cut(s)	68, 642
AlwNI	CAGNNNCTG	1 cut(s)	288
AoxI	GGCC	2 cut(s)	402, 695
ApeKI	GCWGC	2 cut(s)	512, 524
ApoI	RAATTY	2 cut(s)	422, 542
AsuHPI	GGTGA	1 cut(s)	229
BalI	TGGCCA	1 cut(s)	697
BbvI	GCAGC	2 cut(s)	499, 536
BccI	CCATC	2 cut(s)	659, 766
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	4 cut(s)	51, 321, 537, 672
BisI	GCNGC	3 cut(s)	256, 513, 525
BlsI	GCNGC	3 cut(s)	257, 514, 526
Bme1390I	CCNGG	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	233
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
BpmI	CTGGAG	1 cut(s)	560
BpuEI	CTTGAG	3 cut(s)	54, 103, 451
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	256, 516
BsaWI	WCCGGW	2 cut(s)	194, 239
BsaXI	ACNNNNNCTCC	4 cut(s)	436, 466, 745, 775
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 271
Bse1I	ACTGG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	256, 516
BseLI	CCNNNNNNNGG	2 cut(s)	232, 271
BseMII	CTCAG	2 cut(s)	160, 385
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	2 cut(s)	499, 536
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	2 cut(s)	404, 697
BsiSI	CCGG	3 cut(s)	195, 240, 272
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	232, 271
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	666
BsnI	GGCC	2 cut(s)	404, 697
Bso31I	GGTCTC	1 cut(s)	255
Bsp143I	GATC	4 cut(s)	12, 73, 610, 647
Bsp19I	CCATGG	1 cut(s)	516
BspACI	CCGC	4 cut(s)	66, 175, 256, 258
BspANI	GGCC	2 cut(s)	404, 697
BspCNI	CTCAG	2 cut(s)	159, 384
BspFNI	CGCG	1 cut(s)	258
BspPI	GGATC	2 cut(s)	68, 642
BspTNI	GGTCTC	1 cut(s)	255
BsrBI	CCGCTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	256, 516
BssMI	GATC	4 cut(s)	12, 73, 610, 647
BssNAI	GTATAC	1 cut(s)	368
BssT1I	CCWWGG	1 cut(s)	516
Bst1107I	GTATAC	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	5 cut(s)	214, 533, 629, 690, 777
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstDEI	CTNAG	2 cut(s)	146, 371
BstDSI	CCRYGG	2 cut(s)	256, 516
BstEII	GGTNACC	1 cut(s)	235
BstFNI	CGCG	1 cut(s)	258
BstKTI	GATC	4 cut(s)	15, 76, 613, 650
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	4 cut(s)	12, 73, 610, 647
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 521
BstNI	CCWGG	1 cut(s)	233
BstPI	GGTNACC	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	499, 536
BstX2I	RGATCY	2 cut(s)	73, 647
BstYI	RGATCY	2 cut(s)	73, 647
BstZ17I	GTATAC	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	404, 697
BtgI	CCRYGG	2 cut(s)	256, 516
CaiI	CAGNNNCTG	1 cut(s)	288
Cfr42I	CCGCGG	1 cut(s)	259
CsiI	ACCWGGT	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	586, 715
CviAII	CATG	1 cut(s)	517
CviJI	RGCY	9 cut(s)	54, 62, 344, 404, 512, 527, 592, 697, 721
CviKI_1	RGCY	9 cut(s)	54, 62, 344, 404, 512, 527, 592, 697, 721
CviQI	GTAC	2 cut(s)	586, 715
DdeI	CTNAG	2 cut(s)	146, 371
DpnI	GATC	4 cut(s)	14, 75, 612, 649
DpnII	GATC	4 cut(s)	12, 73, 610, 647
EaeI	YGGCCR	2 cut(s)	402, 695
Eco130I	CCWWGG	1 cut(s)	516
Eco31I	GGTCTC	1 cut(s)	255
Eco91I	GGTNACC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	1 cut(s)	520
FaiI	YATR	4 cut(s)	368, 482, 503, 518
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	1 cut(s)	516
FauI	CCCGC	1 cut(s)	182
FblI	GTMKAC	1 cut(s)	367
Fnu4HI	GCNGC	3 cut(s)	256, 513, 525
Fsp4HI	GCNGC	3 cut(s)	256, 513, 525
FspBI	CTAG	4 cut(s)	51, 321, 537, 672
GluI	GCNGC	3 cut(s)	256, 513, 525
GsuI	CTGGAG	1 cut(s)	560
HaeIII	GGCC	2 cut(s)	404, 697
HapII	CCGG	3 cut(s)	195, 240, 272
Hin1II	CATG	1 cut(s)	520
HincII	GTYRAC	2 cut(s)	307, 318
HindII	GTYRAC	2 cut(s)	307, 318
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	2 cut(s)	123, 198
HpaI	GTTAAC	1 cut(s)	318
HpaII	CCGG	3 cut(s)	195, 240, 272
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	3 cut(s)	307, 318, 368
Hpy188I	TCNGA	6 cut(s)	12, 149, 336, 374, 382, 642
Hpy188III	TCNNGA	9 cut(s)	71, 120, 202, 430, 537, 577, 608, 623, 672
Hpy8I	GTNNAC	3 cut(s)	307, 318, 368
Hpy99I	CGWCG	2 cut(s)	403, 781
HpyAV	CCTTC	2 cut(s)	307, 410
HpyCH4III	ACNGT	5 cut(s)	214, 533, 629, 690, 777
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	282, 493, 603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 521
HpyF3I	CTNAG	2 cut(s)	146, 371
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	520
KspAI	GTTAAC	1 cut(s)	318
KspI	CCGCGG	1 cut(s)	259
Kzo9I	GATC	4 cut(s)	12, 73, 610, 647
LmnI	GCTCC	1 cut(s)	680
LpnPI	CCDG	9 cut(s)	208, 215, 218, 245, 253, 285, 488, 590, 621
Lsp1109I	GCAGC	2 cut(s)	499, 536
MabI	ACCWGGT	1 cut(s)	231
MaeI	CTAG	4 cut(s)	51, 321, 537, 672
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	4 cut(s)	208, 235, 284, 434
MalI	GATC	4 cut(s)	14, 75, 612, 649
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	4 cut(s)	12, 73, 610, 647
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	2 cut(s)	73, 647
MlsI	TGGCCA	1 cut(s)	697
MluCI	AATT	6 cut(s)	422, 542, 563, 675, 706, 793
MluNI	TGGCCA	1 cut(s)	697
MnlI	CCTC	6 cut(s)	56, 172, 193, 260, 275, 352
Mox20I	TGGCCA	1 cut(s)	697
MscI	TGGCCA	1 cut(s)	697
MseI	TTAA	2 cut(s)	86, 317
Msp20I	TGGCCA	1 cut(s)	697
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	3 cut(s)	195, 240, 272
MspR9I	CCNGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	666
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	288, 521
NcoI	CCATGG	1 cut(s)	516
NdeII	GATC	4 cut(s)	12, 73, 610, 647
NlaIII	CATG	1 cut(s)	520
NmuCI	GTSAC	2 cut(s)	208, 235
PctI	GAATGC	1 cut(s)	666
PfeI	GAWTC	2 cut(s)	123, 198
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	257, 514, 526
Psp6I	CCWGG	1 cut(s)	231
PspEI	GGTNACC	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	231
PstNI	CAGNNNCTG	1 cut(s)	288
PsuI	RGATCY	2 cut(s)	73, 647
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	2 cut(s)	587, 716
RsaNI	GTAC	2 cut(s)	586, 715
SacII	CCGCGG	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	86, 317
SatI	GCNGC	3 cut(s)	256, 513, 525
Sau3AI	GATC	4 cut(s)	12, 73, 610, 647
ScrFI	CCNGG	1 cut(s)	233
SexAI	ACCWGGT	1 cut(s)	231
Sfr303I	CCGCGG	1 cut(s)	259
SgrBI	CCGCGG	1 cut(s)	259
SmlI	CTYRAG	3 cut(s)	69, 118, 430
SmoI	CTYRAG	3 cut(s)	69, 118, 430
Sse9I	AATT	6 cut(s)	422, 542, 563, 675, 706, 793
SsiI	CCGC	4 cut(s)	66, 175, 256, 258
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	4 cut(s)	51, 321, 537, 672
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	5 cut(s)	214, 533, 629, 690, 777
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	398
TaqII	GACCGA	2 cut(s)	575, 584
TasI	AATT	6 cut(s)	422, 542, 563, 675, 706, 793
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	2 cut(s)	123, 198
Tru1I	TTAA	2 cut(s)	86, 317
Tru9I	TTAA	2 cut(s)	86, 317
TseFI	GTSAC	2 cut(s)	208, 235
TseI	GCWGC	2 cut(s)	512, 524
Tsp45I	GTSAC	2 cut(s)	208, 235
TspDTI	ATGAA	1 cut(s)	518
TspGWI	ACGGA	1 cut(s)	292
Tth111I	GACNNNGTC	1 cut(s)	233
XapI	RAATTY	2 cut(s)	422, 542
XbaI	TCTAGA	2 cut(s)	536, 671
XmiI	GTMKAC	1 cut(s)	367
XspI	CTAG	4 cut(s)	51, 321, 537, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.