Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000283

Physical Location & Seq

Genomic Coordinates Reverse (-)

1234291 .. 1248178

Gene Structure 13888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1014100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAAAAAGTACAATGCGATACAAGAACAAAATGTGGGGAAGGAAATAAATGCTGTCGAGTCATTGCAGTTTAGTTTTGGTACAATTGAAGCAGCCACAAACAAATTCTCTGATCATAACAAGCTAGGGAAGAGTGGCTTTGGTGAGGTCTACAAGGGCACACTTCTTGATGGGCAACAAGTAGCCGTGAAGAGGTTGTCTTGGGGATCCGGGCAAGGCAGTGAGGAGTTTAAGAATGAGGTTGTTTTGGTAGCTAAGCTTCAACACAGAAACTTAGTGAGGATACTAGGATTTTGCTCCGAAGGTGAAGAAAAGATGCTTATTTACGAATTTGGGCAGAACAAAAGCCTTGACCACTTTCTATGTGACTCCGGGAATCAAGTGAATTTGGACTGGCCAAGCAGATACAAGATTATCAACGAGATTGCTCGAGGGATTCTCCATCTCCATCATGATTCACGGCTTAAAATCATACATCATGATCTTAAAGCGAGTAATGTATTGTTAGATGGGGAAATGAACCCAAAAATTGCTGATTTTGGTATGGCAAGAATATTTAGAGTTGATCAAACTCAAGGAAACACACGAAGGATTGTGGGAACATATGGTTATATGGCTCCCGAATATGCGATGCATGGACAGTTCTCTGTGAAGTCTGATGTGTACAGTCTCGGTGTCTTGATCTTAGAGATTGTCACTGGCAAGAAGAACACTAATTTCTATAACTCAGACAATGGCGAAGACCTCTTGAGCCATGTTTGGAGACATTGGAGGGACGGGACGCAGTTAGAATTGCTGGACGTAAATCTAAGAGATTCATATTCAAGAAGTGAAGTAATTAGATGTATCCATATTGAGTTACTCTGTGTTCAGGAAGATCCAGATAAAAGACCGAAAATGCAAAAGATACTTCTCATGCTAAGCAGCTACTCTTTGAGTATGCCATCACCTGAAAGGCCAGCATTTTTCCTGCACAGTAGGACAGATCCGAACATGCCATCAATGAATTGTAGCTCGTTTGATCAACCTGCTAGCAACTCATTGTCATTATCTGTTAATGAAACATTTCATCGATTACTGAACTATACGCTCGATAGTAAATCGAGCAAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

372

Amino Acids

42.17

Weight (kDa)

6.93

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	37 - 304	2.4e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	39 - 304	6.4e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca	FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica	MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica	Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis	pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis	RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata	RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora	Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa	Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha	Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana	Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1036
AccI	GTMKAC	1 cut(s)	150
AclWI	GGATC	4 cut(s)	201, 214, 872, 980
AcoI	YGGCCR	1 cut(s)	395
AcsI	RAATTY	3 cut(s)	104, 329, 385
AfaI	GTAC	3 cut(s)	11, 82, 665
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	3 cut(s)	89, 263, 825
AluBI	AGCT	5 cut(s)	124, 254, 259, 927, 1014
AluI	AGCT	5 cut(s)	124, 254, 259, 927, 1014
Alw26I	GTCTC	2 cut(s)	674, 757
AlwI	GGATC	4 cut(s)	201, 214, 872, 980
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	2 cut(s)	395, 956
ApeKI	GCWGC	2 cut(s)	92, 924
ApoI	RAATTY	3 cut(s)	104, 329, 385
Asp700I	GAANNNNTTC	1 cut(s)	1065
AsuC2I	CCSGG	2 cut(s)	211, 373
AsuHPI	GGTGA	3 cut(s)	155, 317, 939
AsuNHI	GCTAGC	1 cut(s)	1031
AvaI	CYCGRG	1 cut(s)	429
BaeGI	GKGCMC	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	397
BamHI	GGATCC	1 cut(s)	206
BarI	GAAGNNNNNNTAC	2 cut(s)	243, 275
BbsI	GAAGAC	1 cut(s)	747
BbvI	GCAGC	2 cut(s)	104, 936
BccI	CCATC	6 cut(s)	164, 450, 456, 503, 952, 1006
BceAI	ACGGC	2 cut(s)	170, 476
BciVI	GTATCC	2 cut(s)	276, 857
BclI	TGATCA	3 cut(s)	112, 565, 1021
BcnI	CCSGG	2 cut(s)	211, 373
BcoDI	GTCTC	2 cut(s)	674, 757
BfaI	CTAG	3 cut(s)	125, 287, 1032
BfuAI	ACCTGC	1 cut(s)	1036
BfuI	GTATCC	2 cut(s)	276, 857
BisI	GCNGC	2 cut(s)	93, 925
BlpI	GCTNAGC	2 cut(s)	255, 920
BlsI	GCNGC	2 cut(s)	94, 926
Bme1390I	CCNGG	2 cut(s)	211, 373
BmeT110I	CYCGRG	1 cut(s)	429
BmiI	GGNNCC	2 cut(s)	208, 618
BmrFI	CCNGG	2 cut(s)	211, 373
BmsI	GCATC	2 cut(s)	306, 621
BmtI	GCTAGC	1 cut(s)	1035
BpiI	GAAGAC	1 cut(s)	747
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
Bpu1102I	GCTNAGC	2 cut(s)	255, 920
BpuEI	CTTGAG	2 cut(s)	558, 769
BpuMI	CCSGG	2 cut(s)	211, 373
Bsa29I	ATCGAT	1 cut(s)	1072
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	2 cut(s)	398, 703
Bse3DI	GCAATG	1 cut(s)	62
BseCI	ATCGAT	1 cut(s)	1072
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMI	GCAATG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	741
BseNI	ACTGG	2 cut(s)	398, 703
BseRI	GAGGAG	1 cut(s)	239
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	2 cut(s)	104, 936
BsgI	GTGCAG	1 cut(s)	956
BshFI	GGCC	2 cut(s)	397, 958
BshVI	ATCGAT	1 cut(s)	1072
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	2 cut(s)	210, 372
BslFI	GGGAC	2 cut(s)	788, 793
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	2 cut(s)	674, 757
BsmFI	GGGAC	2 cut(s)	788, 793
BsnI	GGCC	2 cut(s)	397, 958
BsoBI	CYCGRG	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp1407I	TGTACA	1 cut(s)	663
Bsp143I	GATC	8 cut(s)	112, 206, 481, 565, 681, 877, 985, 1021
Bsp1720I	GCTNAGC	2 cut(s)	255, 920
BspANI	GGCC	2 cut(s)	397, 958
BspCNI	CTCAG	1 cut(s)	740
BspDI	ATCGAT	1 cut(s)	1072
BspHI	TCATGA	2 cut(s)	451, 478
BspLI	GGNNCC	2 cut(s)	208, 618
BspMI	ACCTGC	1 cut(s)	1036
BspOI	GCTAGC	1 cut(s)	1035
BspPI	GGATC	4 cut(s)	201, 214, 872, 980
BsrDI	GCAATG	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	663
BsrI	ACTGG	2 cut(s)	398, 703
BssMI	GATC	8 cut(s)	112, 206, 481, 565, 681, 877, 985, 1021
Bst4CI	ACNGT	3 cut(s)	642, 668, 977
Bst6I	CTCTTC	2 cut(s)	125, 185
BstAUI	TGTACA	1 cut(s)	663
BstC8I	GCNNGC	2 cut(s)	960, 1033
BstDEI	CTNAG	6 cut(s)	255, 274, 685, 727, 809, 920
BstKTI	GATC	8 cut(s)	115, 209, 484, 568, 684, 880, 988, 1024
BstMAI	GTCTC	2 cut(s)	674, 757
BstMBI	GATC	8 cut(s)	112, 206, 481, 565, 681, 877, 985, 1021
BstNSI	RCATGY	1 cut(s)	997
BstSCI	CCNGG	2 cut(s)	209, 371
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	104, 936
BstV2I	GAAGAC	1 cut(s)	747
BstX2I	RGATCY	3 cut(s)	206, 877, 985
BstYI	RGATCY	3 cut(s)	206, 877, 985
Bsu15I	ATCGAT	1 cut(s)	1072
BsuI	GTATCC	2 cut(s)	276, 857
BsuRI	GGCC	2 cut(s)	397, 958
BsuTUI	ATCGAT	1 cut(s)	1072
BtgZI	GCGATG	1 cut(s)	644
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	2 cut(s)	226, 696
BveI	ACCTGC	1 cut(s)	1036
Cac8I	GCNNGC	2 cut(s)	960, 1033
CciI	TCATGA	2 cut(s)	451, 478
ClaI	ATCGAT	1 cut(s)	1072
CseI	GACGC	1 cut(s)	790
Csp6I	GTAC	3 cut(s)	10, 81, 664
CviAII	CATG	6 cut(s)	452, 479, 635, 755, 916, 994
CviQI	GTAC	3 cut(s)	10, 81, 664
DdeI	CTNAG	6 cut(s)	255, 274, 685, 727, 809, 920
DpnI	GATC	8 cut(s)	114, 208, 483, 567, 683, 879, 987, 1023
DpnII	GATC	8 cut(s)	112, 206, 481, 565, 681, 877, 985, 1021
EaeI	YGGCCR	1 cut(s)	395
Eam1104I	CTCTTC	2 cut(s)	125, 185
EarI	CTCTTC	2 cut(s)	125, 185
Eco88I	CYCGRG	1 cut(s)	429
EcoT22I	ATGCAT	1 cut(s)	636
FaeI	CATG	6 cut(s)	455, 482, 638, 758, 919, 997
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	2 cut(s)	788, 793
FatI	CATG	6 cut(s)	451, 478, 634, 754, 915, 993
FauNDI	CATATG	1 cut(s)	604
FbaI	TGATCA	3 cut(s)	112, 565, 1021
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	2 cut(s)	93, 925
Fsp4HI	GCNGC	2 cut(s)	93, 925
FspBI	CTAG	3 cut(s)	125, 287, 1032
GluI	GCNGC	2 cut(s)	93, 925
HaeIII	GGCC	2 cut(s)	397, 958
HapII	CCGG	2 cut(s)	210, 372
HgaI	GACGC	1 cut(s)	790
Hin1II	CATG	6 cut(s)	455, 482, 638, 758, 919, 997
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	6 cut(s)	59, 368, 376, 436, 455, 815
HpaII	CCGG	2 cut(s)	210, 372
HphI	GGTGA	3 cut(s)	155, 317, 939
Hpy166II	GTNNAC	2 cut(s)	151, 664
Hpy188I	TCNGA	5 cut(s)	112, 301, 658, 730, 990
Hpy188III	TCNNGA	9 cut(s)	167, 452, 479, 620, 679, 748, 825, 872, 881
Hpy8I	GTNNAC	2 cut(s)	151, 664
HpyAV	CCTTC	3 cut(s)	34, 296, 582
HpyCH4III	ACNGT	3 cut(s)	642, 668, 977
HpyCH4IV	ACGT	1 cut(s)	801
HpyCH4V	TGCA	4 cut(s)	67, 634, 901, 973
HpyF3I	CTNAG	6 cut(s)	255, 274, 685, 727, 809, 920
HpySE526I	ACGT	1 cut(s)	801
Hsp92II	CATG	6 cut(s)	455, 482, 638, 758, 919, 997
Ksp22I	TGATCA	3 cut(s)	112, 565, 1021
Kzo9I	GATC	8 cut(s)	112, 206, 481, 565, 681, 877, 985, 1021
LmnI	GCTCC	2 cut(s)	302, 622
Lsp1109I	GCAGC	2 cut(s)	104, 936
LweI	GCATC	2 cut(s)	306, 621
MaeI	CTAG	3 cut(s)	125, 287, 1032
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	3 cut(s)	365, 694, 858
MalI	GATC	8 cut(s)	114, 208, 483, 567, 683, 879, 987, 1023
MboI	GATC	8 cut(s)	112, 206, 481, 565, 681, 877, 985, 1021
MboII	GAAGA	6 cut(s)	142, 202, 320, 718, 752, 887
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	3 cut(s)	206, 877, 985
MhlI	GDGCHC	1 cut(s)	161
MlsI	TGGCCA	1 cut(s)	397
MluCI	AATT	9 cut(s)	84, 104, 329, 385, 528, 715, 791, 837, 1006
MluNI	TGGCCA	1 cut(s)	397
MlyI	GAGTC	2 cut(s)	68, 362
MnlI	CCTC	8 cut(s)	139, 186, 217, 232, 273, 425, 755, 765
Mox20I	TGGCCA	1 cut(s)	397
Mph1103I	ATGCAT	1 cut(s)	636
MroXI	GAANNNNTTC	1 cut(s)	1065
MscI	TGGCCA	1 cut(s)	397
MseI	TTAA	4 cut(s)	231, 465, 486, 1056
Msp20I	TGGCCA	1 cut(s)	397
MspI	CCGG	2 cut(s)	210, 372
MspR9I	CCNGG	2 cut(s)	211, 373
MunI	CAATTG	1 cut(s)	84
NciI	CCSGG	2 cut(s)	211, 373
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	8 cut(s)	112, 206, 481, 565, 681, 877, 985, 1021
NheI	GCTAGC	1 cut(s)	1031
NlaIII	CATG	6 cut(s)	455, 482, 638, 758, 919, 997
NlaIV	GGNNCC	2 cut(s)	208, 618
NmuCI	GTSAC	2 cut(s)	365, 694
NsiI	ATGCAT	1 cut(s)	636
NspI	RCATGY	1 cut(s)	997
PaeR7I	CTCGAG	1 cut(s)	429
PagI	TCATGA	2 cut(s)	451, 478
PdmI	GAANNNNTTC	1 cut(s)	1065
PfeI	GAWTC	4 cut(s)	376, 436, 455, 815
PfoI	TCCNGGA	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	94, 926
PleI	GAGTC	2 cut(s)	67, 362
PpsI	GAGTC	2 cut(s)	67, 362
PspN4I	GGNNCC	2 cut(s)	208, 618
PspXI	VCTCGAGB	1 cut(s)	429
PsuI	RGATCY	3 cut(s)	206, 877, 985
RsaI	GTAC	3 cut(s)	11, 82, 665
RsaNI	GTAC	3 cut(s)	10, 81, 664
SaqAI	TTAA	4 cut(s)	231, 465, 486, 1056
SatI	GCNGC	2 cut(s)	93, 925
Sau3AI	GATC	8 cut(s)	112, 206, 481, 565, 681, 877, 985, 1021
SchI	GAGTC	2 cut(s)	68, 362
ScrFI	CCNGG	2 cut(s)	211, 373
SduI	GDGCHC	1 cut(s)	161
SfaNI	GCATC	2 cut(s)	306, 621
Sfr274I	CTCGAG	1 cut(s)	429
SlaI	CTCGAG	1 cut(s)	429
SmlI	CTYRAG	3 cut(s)	429, 573, 748
SmoI	CTYRAG	3 cut(s)	429, 573, 748
Sse9I	AATT	9 cut(s)	84, 104, 329, 385, 528, 715, 791, 837, 1006
SspI	AATATT	1 cut(s)	555
SspMI	CTAG	3 cut(s)	125, 287, 1032
StyD4I	CCNGG	2 cut(s)	209, 371
TaaI	ACNGT	3 cut(s)	642, 668, 977
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	5 cut(s)	57, 430, 1072, 1092, 1103
TaqII	GACCGA	1 cut(s)	907
TasI	AATT	9 cut(s)	84, 104, 329, 385, 528, 715, 791, 837, 1006
TatI	WGTACW	2 cut(s)	9, 663
TfiI	GAWTC	4 cut(s)	376, 436, 455, 815
Tru1I	TTAA	4 cut(s)	231, 465, 486, 1056
Tru9I	TTAA	4 cut(s)	231, 465, 486, 1056
TscAI	CASTG	2 cut(s)	226, 703
TseFI	GTSAC	2 cut(s)	365, 694
TseI	GCWGC	2 cut(s)	92, 924
Tsp45I	GTSAC	2 cut(s)	365, 694
TspDTI	ATGAA	6 cut(s)	17, 533, 807, 1019, 1058, 1074
TspRI	CASTG	2 cut(s)	226, 703
XapI	RAATTY	3 cut(s)	104, 329, 385
XceI	RCATGY	1 cut(s)	997
XhoI	CTCGAG	1 cut(s)	429
XmiI	GTMKAC	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	1065
XspI	CTAG	3 cut(s)	125, 287, 1032
Zsp2I	ATGCAT	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.