Rh5CG041100

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
2758380 .. 2796768
38389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG041100.1

Sequence Viewer

Length: 636 bp
ATGCTACGCTACTCCAACAACTCCTTCTTCTCCGTCGCCGCCGAGACGCCGAGGGTGTTCATGTGGAACGCCCAAAACGTCAGCAGCGAAACGAACCGGTTCAACCAGGTTTTGGCGGCGAGCATGACGGAGGTGGCCACGGAGGCTTCGAACGACAGCGATAAGTTCGCGACGAGAGAGGCGAACTTCAATGGGTCGATTAAATTGTACAGCTTGGGGCAGTGCACGCAGGACTTGTCTAGTGTTGAATGCAATCGGTGTCTTAAGGGAGCCATAGAAAATTTGCCGACTTGCTGCGGCGGGAAGCAAGGGGGACGAGTTCTGTATCCGAGTTGTAATGTTAGGTATGAAGTTTTACCCTTTTATCAGAACTCGACGTCAGCACCGGCGCCGGCGCCAGGGGCTTGGCCTCTTTCTCCGCCGAGCTCAGTGAGTAAAGGGAAGAGCAAAATCTCCTGGAAAAAGATTGTGGCCATTGTCGTTCCAATTGCAGCCTCTTTGGTGCTTTTTGTGATCTGCTACTGCCTCATTACTAAGAGGGCAAAAAAGAAGTACAATGCAGTACCAGAAACAAGTAATGATTTTGATTACAGTTTTACTTTGCTTTTGGATTTCTCCTGGAATCAAGTCTTCTAA

Protein Analysis

211

Amino Acids

23.26

Weight (kDa)

8.89

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 27 - 117 3.6e-13 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 380
AccB1I GGYRCC 2 cut(s) 388, 394
AccB7I CCANNNNNTGG 1 cut(s) 112
AccII CGCG 1 cut(s) 170
AciI CCGC 5 cut(s) 39, 116, 297, 300, 419
AcoI YGGCCR 2 cut(s) 135, 471
AcsI RAATTY 1 cut(s) 280
AcyI GRCGYC 4 cut(s) 47, 377, 389, 395
AfaI GTAC 3 cut(s) 209, 554, 564
AfiI CCNNNNNNNGG 2 cut(s) 112, 398
AflII CTTAAG 1 cut(s) 263
AgeI ACCGGT 1 cut(s) 96
AgsI TTSAA 3 cut(s) 103, 190, 248
AjnI CCWGG 4 cut(s) 105, 397, 455, 617
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 2 cut(s) 213, 426
AluI AGCT 2 cut(s) 213, 426
Alw21I GWGCWC 2 cut(s) 227, 428
Alw26I GTCTC 1 cut(s) 38
Alw44I GTGCAC 1 cut(s) 223
AoxI GGCC 3 cut(s) 135, 407, 471
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 3 cut(s) 84, 294, 491
ApoI RAATTY 1 cut(s) 280
AsiGI ACCGGT 1 cut(s) 96
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 2 cut(s) 391, 397
AsuII TTCGAA 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 227
BalI TGGCCA 2 cut(s) 137, 473
BanI GGYRCC 2 cut(s) 388, 394
BanII GRGCYC 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 622
Bbv12I GWGCWC 2 cut(s) 227, 428
BbvI GCAGC 3 cut(s) 96, 281, 503
BciT130I CCWGG 4 cut(s) 107, 399, 457, 619
BciVI GTATCC 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 240
BfoI RGCGCY 2 cut(s) 392, 398
BfrI CTTAAG 1 cut(s) 263
BfuI GTATCC 1 cut(s) 336
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 6 cut(s) 39, 85, 117, 295, 298, 492
BlsI GCNGC 6 cut(s) 40, 86, 118, 296, 299, 493
Bme1390I CCNGG 4 cut(s) 107, 399, 457, 619
BmiI GGNNCC 3 cut(s) 271, 390, 396
BmrFI CCNGG 4 cut(s) 107, 399, 457, 619
BpiI GAAGAC 1 cut(s) 622
Bpu14I TTCGAA 1 cut(s) 149
BsaHI GRCGYC 4 cut(s) 47, 377, 389, 395
BsaJI CCNNGG 3 cut(s) 50, 138, 398
BsaWI WCCGGW 1 cut(s) 96
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 398
Bse118I RCCGGY 3 cut(s) 96, 385, 391
BseBI CCWGG 4 cut(s) 107, 399, 457, 619
BseDI CCNNGG 3 cut(s) 50, 138, 398
BseLI CCNNNNNNNGG 2 cut(s) 112, 398
BseMII CTCAG 1 cut(s) 441
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 3 cut(s) 96, 281, 503
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 3 cut(s) 137, 409, 473
BshNI GGYRCC 2 cut(s) 388, 394
BshTI ACCGGT 1 cut(s) 96
BsiHKAI GWGCWC 2 cut(s) 227, 428
BsiSI CCGG 3 cut(s) 97, 386, 392
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 112, 398
BsmAI GTCTC 1 cut(s) 38
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 327
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 3 cut(s) 137, 409, 473
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 227, 428
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 1 cut(s) 513
Bsp68I TCGCGA 1 cut(s) 170
BspACI CCGC 5 cut(s) 39, 116, 297, 300, 419
BspANI GGCC 3 cut(s) 137, 409, 473
BspCNI CTCAG 1 cut(s) 440
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 3 cut(s) 271, 390, 396
BspQI GCTCTTC 1 cut(s) 437
BspT104I TTCGAA 1 cut(s) 149
BspT107I GGYRCC 2 cut(s) 388, 394
BspTI CTTAAG 1 cut(s) 263
BsrFI RCCGGY 3 cut(s) 96, 385, 391
BsrGI TGTACA 1 cut(s) 207
BssAI RCCGGY 3 cut(s) 96, 385, 391
BssECI CCNNGG 3 cut(s) 50, 138, 398
BssMI GATC 1 cut(s) 513
BssNI GRCGYC 4 cut(s) 47, 377, 389, 395
Bst2UI CCWGG 4 cut(s) 107, 399, 457, 619
Bst4CI ACNGT 1 cut(s) 593
Bst6I CTCTTC 1 cut(s) 437
BstACI GRCGYC 4 cut(s) 47, 377, 389, 395
BstAFI CTTAAG 1 cut(s) 263
BstAUI TGTACA 1 cut(s) 207
BstBI TTCGAA 1 cut(s) 149
BstC8I GCNNGC 3 cut(s) 121, 227, 393
BstDEI CTNAG 2 cut(s) 427, 534
BstDSI CCRYGG 1 cut(s) 138
BstFNI CGCG 1 cut(s) 170
BstH2I RGCGCY 2 cut(s) 392, 398
BstHHI GCGC 2 cut(s) 391, 397
BstKTI GATC 1 cut(s) 516
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 1 cut(s) 513
BstMWI GCNNNNNNNGC 3 cut(s) 143, 226, 401
BstNI CCWGG 4 cut(s) 107, 399, 457, 619
BstSCI CCNGG 4 cut(s) 105, 397, 455, 617
BstSLI GKGCMC 1 cut(s) 227
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 3 cut(s) 96, 281, 503
BstV2I GAAGAC 1 cut(s) 622
BstXI CCANNNNNNTGG 1 cut(s) 405
BsuI GTATCC 1 cut(s) 336
BsuRI GGCC 3 cut(s) 137, 409, 473
BtgI CCRYGG 1 cut(s) 138
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 2 cut(s) 227, 435
BtuMI TCGCGA 1 cut(s) 170
Cac8I GCNNGC 3 cut(s) 121, 227, 393
CfoI GCGC 2 cut(s) 391, 397
Cfr10I RCCGGY 3 cut(s) 96, 385, 391
CseI GACGC 1 cut(s) 55
CsiI ACCWGGT 1 cut(s) 105
Csp6I GTAC 3 cut(s) 208, 553, 563
CspAI ACCGGT 1 cut(s) 96
CviAII CATG 2 cut(s) 61, 124
CviJI RGCY 9 cut(s) 137, 146, 213, 272, 404, 409, 426, 473, 494
CviKI_1 RGCY 9 cut(s) 137, 146, 213, 272, 404, 409, 426, 473, 494
CviQI GTAC 3 cut(s) 208, 553, 563
DdeI CTNAG 2 cut(s) 427, 534
DinI GGCGCC 2 cut(s) 390, 396
DpnI GATC 1 cut(s) 515
DpnII GATC 1 cut(s) 513
EaeI YGGCCR 2 cut(s) 135, 471
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
EciI GGCGGA 1 cut(s) 408
Ecl136II GAGCTC 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 428
Eco53kI GAGCTC 1 cut(s) 426
EcoICRI GAGCTC 1 cut(s) 426
EcoRII CCWGG 4 cut(s) 105, 397, 455, 617
EcoT38I GRGCYC 1 cut(s) 428
EgeI GGCGCC 2 cut(s) 390, 396
EheI GGCGCC 2 cut(s) 390, 396
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 2 cut(s) 64, 127
FaiI YATR 4 cut(s) 62, 125, 275, 348
FaqI GGGAC 1 cut(s) 327
FatI CATG 2 cut(s) 60, 123
FauI CCCGC 1 cut(s) 293
Fnu4HI GCNGC 6 cut(s) 39, 85, 117, 295, 298, 492
FriOI GRGCYC 1 cut(s) 428
Fsp4HI GCNGC 6 cut(s) 39, 85, 117, 295, 298, 492
FspBI CTAG 1 cut(s) 240
GlaI GCGC 2 cut(s) 390, 396
GluI GCNGC 6 cut(s) 39, 85, 117, 295, 298, 492
HaeII RGCGCY 2 cut(s) 392, 398
HaeIII GGCC 3 cut(s) 137, 409, 473
HapII CCGG 3 cut(s) 97, 386, 392
HgaI GACGC 1 cut(s) 55
HhaI GCGC 2 cut(s) 391, 397
Hin1I GRCGYC 4 cut(s) 47, 377, 389, 395
Hin1II CATG 2 cut(s) 64, 127
Hin6I GCGC 2 cut(s) 389, 395
HinP1I GCGC 2 cut(s) 389, 395
HinfI GANTC 1 cut(s) 622
HpaII CCGG 3 cut(s) 97, 386, 392
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 2 cut(s) 330, 369
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 225
Hpy99I CGWCG 3 cut(s) 38, 175, 379
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 593
HpyCH4IV ACGT 2 cut(s) 78, 377
HpyCH4V TGCA 4 cut(s) 225, 252, 491, 560
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 226, 401
HpyF3I CTNAG 2 cut(s) 427, 534
HpySE526I ACGT 2 cut(s) 78, 377
Hsp92I GRCGYC 4 cut(s) 47, 377, 389, 395
Hsp92II CATG 2 cut(s) 64, 127
HspAI GCGC 2 cut(s) 389, 395
KasI GGCGCC 2 cut(s) 388, 394
KroI GCCGGC 1 cut(s) 391
KroNI GCCGGC 1 cut(s) 393
Kzo9I GATC 1 cut(s) 513
LguI GCTCTTC 1 cut(s) 437
LmnI GCTCC 1 cut(s) 269
Lsp1109I GCAGC 3 cut(s) 96, 281, 503
MabI ACCWGGT 1 cut(s) 105
MaeI CTAG 1 cut(s) 240
MaeII ACGT 2 cut(s) 78, 377
MalI GATC 1 cut(s) 515
MboI GATC 1 cut(s) 513
MboII GAAGA 3 cut(s) 19, 454, 622
MfeI CAATTG 1 cut(s) 486
MhlI GDGCHC 2 cut(s) 227, 428
MlsI TGGCCA 2 cut(s) 137, 473
MluCI AATT 3 cut(s) 203, 280, 486
MluNI TGGCCA 2 cut(s) 137, 473
Mly113I GGCGCC 2 cut(s) 389, 395
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 8 cut(s) 45, 124, 136, 172, 420, 505, 531, 536
Mox20I TGGCCA 2 cut(s) 137, 473
MreI CGCCGGCG 1 cut(s) 391
MroNI GCCGGC 1 cut(s) 391
MroXI GAANNNNTTC 1 cut(s) 98
MscI TGGCCA 2 cut(s) 137, 473
MseI TTAA 2 cut(s) 201, 264
Msp20I TGGCCA 2 cut(s) 137, 473
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 3 cut(s) 97, 386, 392
MspR9I CCNGG 4 cut(s) 107, 399, 457, 619
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 4 cut(s) 107, 399, 457, 619
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 3 cut(s) 143, 226, 401
NaeI GCCGGC 1 cut(s) 393
NarI GGCGCC 2 cut(s) 389, 395
NdeII GATC 1 cut(s) 513
NgoMIV GCCGGC 1 cut(s) 391
NlaIII CATG 2 cut(s) 64, 127
NlaIV GGNNCC 3 cut(s) 271, 390, 396
NmeAIII GCCGAG 3 cut(s) 67, 75, 447
NruI TCGCGA 1 cut(s) 170
NspV TTCGAA 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 437
PcsI WCGNNNNNNNCGW 4 cut(s) 75, 84, 146, 179
PctI GAATGC 1 cut(s) 254
PdiI GCCGGC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 622
PflMI CCANNNNNTGG 1 cut(s) 112
PfoI TCCNGGA 2 cut(s) 455, 617
PinAI ACCGGT 1 cut(s) 96
PkrI GCNGC 6 cut(s) 40, 86, 118, 296, 299, 493
PluTI GGCGCC 2 cut(s) 392, 398
Psp124BI GAGCTC 1 cut(s) 428
Psp6I CCWGG 4 cut(s) 105, 397, 455, 617
PspGI CCWGG 4 cut(s) 105, 397, 455, 617
PspN4I GGNNCC 3 cut(s) 271, 390, 396
RruI TCGCGA 1 cut(s) 170
RsaI GTAC 3 cut(s) 209, 554, 564
RsaNI GTAC 3 cut(s) 208, 553, 563
SacI GAGCTC 1 cut(s) 428
SapI GCTCTTC 1 cut(s) 437
SaqAI TTAA 2 cut(s) 201, 264
SatI GCNGC 6 cut(s) 39, 85, 117, 295, 298, 492
Sau3AI GATC 1 cut(s) 513
ScrFI CCNGG 4 cut(s) 107, 399, 457, 619
SduI GDGCHC 2 cut(s) 227, 428
SetI ASST 7 cut(s) 81, 111, 135, 215, 347, 380, 428
SexAI ACCWGGT 1 cut(s) 105
SfoI GGCGCC 2 cut(s) 390, 396
SfuI TTCGAA 1 cut(s) 149
SgrAI CRCCGGYG 2 cut(s) 385, 391
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 3 cut(s) 203, 280, 486
SsiI CCGC 5 cut(s) 39, 116, 297, 300, 419
SspDI GGCGCC 2 cut(s) 388, 394
SspMI CTAG 1 cut(s) 240
SstI GAGCTC 1 cut(s) 428
StyD4I CCNGG 4 cut(s) 105, 397, 455, 617
TaaI ACNGT 1 cut(s) 593
TaiI ACGT 2 cut(s) 81, 380
TaqI TCGA 3 cut(s) 149, 197, 374
TasI AATT 3 cut(s) 203, 280, 486
TatI WGTACW 2 cut(s) 207, 552
TauI GCSGC 3 cut(s) 41, 119, 300
TfiI GAWTC 1 cut(s) 622
Tru1I TTAA 2 cut(s) 201, 264
Tru9I TTAA 2 cut(s) 201, 264
TscAI CASTG 2 cut(s) 227, 435
TseI GCWGC 3 cut(s) 84, 294, 491
TspDTI ATGAA 2 cut(s) 49, 363
TspGWI ACGGA 3 cut(s) 22, 143, 155
TspRI CASTG 2 cut(s) 227, 435
Van91I CCANNNNNTGG 1 cut(s) 112
Vha464I CTTAAG 1 cut(s) 263
VneI GTGCAC 1 cut(s) 223
XapI RAATTY 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 1 cut(s) 240
ZraI GACGTC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.