Rmu_sc0004964.1_g000002

Cysteine-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004964.1
OG0000283
Physical Location & Seq
Reverse (-)
7502 .. 8326
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004964.1_g000002.1.cds

Sequence Viewer

Length: 825 bp
atgattatcataatgtcttctaatatgttcacggcccttgtggtcctctccattcttggcttccttagccttagcgttgaagctcaagcaccaacttaccggtttcatttctgttcaaacacaaccaatttcactcccaacagcttctaccagtctaatcgaaatctcctcctctcttatctcacatccaacgccacacgtgatattggattctattacaccaccgcgggcgtgcaagactcctcctacagtggagtttacggttctttcctatgccgtggagatgtcacccccgagttgtgccaagaatgtgttactactgcggccaaagatgttgtccgacagtactgccccttggtaaaaatcgcaataatatggtacgacgagtgcatgttgcgctacgcaaaccggtcttacttgaacataatggacgaagctcctggagtttccatgcggaacattgggagtatcactggctttatgcagctgggggcagaaacaatcaatggcatggtggctccggtttcaaatgcaccctccggtgctaaaaagtatgcaacaaaagaagcagctttcacagggtttcagcagttgtacagccttgtgcagtgcacaccagacctatcaagcacaagttgtgttacatgtcttcgaggagctattgcgcaacttccaggaaagcaaggcgctagaattttatttcctagttgtaatgttcgatatgaagtttatccattttatacaactgaagcagccataccttcaccaccgccacaacctctgactcttcctcccccacctccaggttcagtagtgagatcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

274

Amino Acids

29.91

Weight (kDa)

7.99

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 666
AccII CGCG 1 cut(s) 227
AciI CCGC 5 cut(s) 225, 227, 323, 454, 770
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 1 cut(s) 693
AcuI CTGAAG 1 cut(s) 768
AcvI CACGTG 1 cut(s) 200
AfaI GTAC 3 cut(s) 347, 380, 596
AfiI CCNNNNNNNGG 1 cut(s) 803
AflIII ACRYGT 2 cut(s) 197, 644
AgeI ACCGGT 2 cut(s) 99, 408
AgsI TTSAA 4 cut(s) 80, 117, 421, 528
AjnI CCWGG 3 cut(s) 439, 673, 802
AluBI AGCT 6 cut(s) 83, 144, 437, 487, 572, 659
AluI AGCT 6 cut(s) 83, 144, 437, 487, 572, 659
Alw21I GWGCWC 1 cut(s) 614
Alw44I GTGCAC 1 cut(s) 610
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 2 cut(s) 33, 324
ApaLI GTGCAC 1 cut(s) 610
ApeKI GCWGC 3 cut(s) 484, 569, 752
ApoI RAATTY 1 cut(s) 693
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
AsiGI ACCGGT 2 cut(s) 99, 408
AspLEI GCGC 3 cut(s) 399, 667, 689
AspS9I GGNCC 2 cut(s) 34, 43
AsuHPI GGTGA 2 cut(s) 280, 756
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 614
BarI GAAGNNNNNNTAC 2 cut(s) 741, 773
BbrPI CACGTG 1 cut(s) 200
BbsI GAAGAC 2 cut(s) 9, 641
Bbv12I GWGCWC 1 cut(s) 614
BbvI GCAGC 3 cut(s) 496, 581, 764
BceAI ACGGC 2 cut(s) 48, 261
BcgI CGANNNNNNTGC 2 cut(s) 330, 364
BciT130I CCWGG 3 cut(s) 441, 675, 804
BfaI CTAG 2 cut(s) 690, 705
BfmI CTRYAG 1 cut(s) 247
BfoI RGCGCY 1 cut(s) 690
BglII AGATCT 1 cut(s) 818
BisI GCNGC 4 cut(s) 324, 485, 570, 753
BlsI GCNGC 4 cut(s) 325, 486, 571, 754
BmcAI AGTACT 1 cut(s) 347
Bme1390I CCNGG 3 cut(s) 441, 675, 804
Bme18I GGWCC 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 34, 43
BmiI GGNNCC 1 cut(s) 519
BmrFI CCNGG 3 cut(s) 441, 675, 804
BpiI GAAGAC 2 cut(s) 9, 641
BpmI CTGGAG 2 cut(s) 462, 786
Bpu10I CCTNAGC 2 cut(s) 65, 71
BpuEI CTTGAG 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 200
BsaJI CCNNGG 3 cut(s) 225, 277, 354
BsaWI WCCGGW 4 cut(s) 99, 408, 520, 539
BsaXI ACNNNNNCTCC 2 cut(s) 775, 805
Bsc4I CCNNNNNNNGG 1 cut(s) 803
Bse118I RCCGGY 2 cut(s) 99, 408
Bse1I ACTGG 2 cut(s) 151, 478
BseBI CCWGG 3 cut(s) 441, 675, 804
BseDI CCNNGG 3 cut(s) 225, 277, 354
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 803
BseNI ACTGG 2 cut(s) 151, 478
BseRI GAGGAG 4 cut(s) 158, 161, 232, 669
BseSI GKGCMC 1 cut(s) 614
BseXI GCAGC 3 cut(s) 496, 581, 764
BseYI CCCAGC 1 cut(s) 487
BsgI GTGCAG 1 cut(s) 626
Bsh1236I CGCG 1 cut(s) 227
BshFI GGCC 2 cut(s) 35, 326
BshTI ACCGGT 2 cut(s) 99, 408
BsiHKAI GWGCWC 1 cut(s) 614
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 4 cut(s) 100, 409, 521, 540
BslI CCNNNNNNNGG 1 cut(s) 803
BsnI GGCC 2 cut(s) 35, 326
BsoBI CYCGRG 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 614
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 1 cut(s) 818
BspACI CCGC 5 cut(s) 225, 227, 323, 454, 770
BspANI GGCC 2 cut(s) 35, 326
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 519
BsrFI RCCGGY 2 cut(s) 99, 408
BsrGI TGTACA 1 cut(s) 594
BsrI ACTGG 2 cut(s) 151, 478
BssAI RCCGGY 2 cut(s) 99, 408
BssECI CCNNGG 3 cut(s) 225, 277, 354
BssMI GATC 1 cut(s) 818
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 3 cut(s) 441, 675, 804
Bst4CI ACNGT 3 cut(s) 251, 263, 345
Bst6I CTCTTC 1 cut(s) 792
BstAUI TGTACA 1 cut(s) 594
BstBAI YACGTR 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 229, 233
BstDEI CTNAG 2 cut(s) 65, 71
BstDSI CCRYGG 2 cut(s) 225, 277
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 227
BstH2I RGCGCY 1 cut(s) 690
BstHHI GCGC 3 cut(s) 399, 667, 689
BstKTI GATC 1 cut(s) 821
BstMBI GATC 1 cut(s) 818
BstMWI GCNNNNNNNGC 2 cut(s) 66, 396
BstNI CCWGG 3 cut(s) 441, 675, 804
BstNSI RCATGY 2 cut(s) 394, 648
BstSCI CCNGG 3 cut(s) 439, 673, 802
BstSFI CTRYAG 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 614
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 3 cut(s) 496, 581, 764
BstV2I GAAGAC 2 cut(s) 9, 641
BstX2I RGATCY 1 cut(s) 818
BstYI RGATCY 1 cut(s) 818
BsuRI GGCC 2 cut(s) 35, 326
BtgI CCRYGG 2 cut(s) 225, 277
BtsCI GGATG 1 cut(s) 185
BtsI GCAGTG 1 cut(s) 614
BtsIMutI CAGTG 3 cut(s) 256, 471, 614
Cac8I GCNNGC 2 cut(s) 229, 233
CfoI GCGC 3 cut(s) 399, 667, 689
Cfr10I RCCGGY 2 cut(s) 99, 408
Cfr13I GGNCC 2 cut(s) 34, 43
Cfr42I CCGCGG 1 cut(s) 228
Csp6I GTAC 3 cut(s) 346, 379, 595
CspAI ACCGGT 2 cut(s) 99, 408
CviAII CATG 4 cut(s) 391, 451, 511, 645
CviQI GTAC 3 cut(s) 346, 379, 595
DdeI CTNAG 2 cut(s) 65, 71
DpnI GATC 1 cut(s) 820
DpnII GATC 1 cut(s) 818
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
Eco130I CCWWGG 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 768
Eco72I CACGTG 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 293
EcoRII CCWGG 3 cut(s) 439, 673, 802
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 4 cut(s) 394, 454, 514, 648
FatI CATG 4 cut(s) 390, 450, 510, 644
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 4 cut(s) 324, 485, 570, 753
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 4 cut(s) 324, 485, 570, 753
FspBI CTAG 2 cut(s) 690, 705
FspI TGCGCA 1 cut(s) 666
GlaI GCGC 3 cut(s) 398, 666, 688
GluI GCNGC 4 cut(s) 324, 485, 570, 753
GsaI CCCAGC 1 cut(s) 491
GsuI CTGGAG 2 cut(s) 462, 786
HaeII RGCGCY 1 cut(s) 690
HaeIII GGCC 2 cut(s) 35, 326
HapII CCGG 4 cut(s) 100, 409, 521, 540
HhaI GCGC 3 cut(s) 399, 667, 689
Hin1II CATG 4 cut(s) 394, 454, 514, 648
Hin6I GCGC 3 cut(s) 397, 665, 687
HinP1I GCGC 3 cut(s) 397, 665, 687
HinfI GANTC 3 cut(s) 210, 239, 784
HpaII CCGG 4 cut(s) 100, 409, 521, 540
HphI GGTGA 2 cut(s) 280, 756
Hpy166II GTNNAC 3 cut(s) 30, 259, 612
Hpy188I TCNGA 2 cut(s) 341, 783
Hpy188III TCNNGA 1 cut(s) 822
Hpy8I GTNNAC 3 cut(s) 30, 259, 612
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 1 cut(s) 771
HpyCH4III ACNGT 3 cut(s) 251, 263, 345
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 7 cut(s) 235, 390, 484, 533, 557, 607, 612
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 396
HpyF3I CTNAG 2 cut(s) 65, 71
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 4 cut(s) 394, 454, 514, 648
HspAI GCGC 3 cut(s) 397, 665, 687
KspI CCGCGG 1 cut(s) 228
Kzo9I GATC 1 cut(s) 818
LmnI GCTCC 3 cut(s) 442, 523, 656
Lsp1109I GCAGC 3 cut(s) 496, 581, 764
MaeI CTAG 2 cut(s) 690, 705
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 3 cut(s) 286, 313, 640
MalI GATC 1 cut(s) 820
MboI GATC 1 cut(s) 818
MboII GAAGA 3 cut(s) 9, 641, 779
MflI RGATCY 1 cut(s) 818
MhlI GDGCHC 1 cut(s) 614
MluCI AATT 2 cut(s) 127, 693
MlyI GAGTC 2 cut(s) 233, 778
MmeI TCCRAC 2 cut(s) 213, 364
MnlI CCTC 9 cut(s) 56, 179, 182, 253, 547, 647, 789, 801, 810
MspA1I CMGCKG 2 cut(s) 227, 487
MspI CCGG 4 cut(s) 100, 409, 521, 540
MspR9I CCNGG 3 cut(s) 441, 675, 804
MvaI CCWGG 3 cut(s) 441, 675, 804
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 66, 396
NdeII GATC 1 cut(s) 818
NlaIII CATG 4 cut(s) 394, 454, 514, 648
NlaIV GGNNCC 1 cut(s) 519
NmuCI GTSAC 1 cut(s) 286
NsbI TGCGCA 1 cut(s) 666
NspI RCATGY 2 cut(s) 394, 648
PciI ACATGT 1 cut(s) 644
PfeI GAWTC 1 cut(s) 210
PfoI TCCNGGA 2 cut(s) 439, 673
PinAI ACCGGT 2 cut(s) 99, 408
PkrI GCNGC 4 cut(s) 325, 486, 571, 754
PleI GAGTC 2 cut(s) 233, 778
PmaCI CACGTG 1 cut(s) 200
PmlI CACGTG 1 cut(s) 200
PpsI GAGTC 2 cut(s) 233, 778
Ppu21I YACGTR 1 cut(s) 200
PscI ACATGT 1 cut(s) 644
Psp6I CCWGG 3 cut(s) 439, 673, 802
PspCI CACGTG 1 cut(s) 200
PspFI CCCAGC 1 cut(s) 487
PspGI CCWGG 3 cut(s) 439, 673, 802
PspN4I GGNNCC 1 cut(s) 519
PspPI GGNCC 2 cut(s) 34, 43
PsuI RGATCY 1 cut(s) 818
PvuII CAGCTG 1 cut(s) 487
RsaI GTAC 3 cut(s) 347, 380, 596
RsaNI GTAC 3 cut(s) 346, 379, 595
SacII CCGCGG 1 cut(s) 228
SatI GCNGC 4 cut(s) 324, 485, 570, 753
Sau3AI GATC 1 cut(s) 818
Sau96I GGNCC 2 cut(s) 34, 43
ScaI AGTACT 1 cut(s) 347
SchI GAGTC 2 cut(s) 233, 778
ScrFI CCNGG 3 cut(s) 441, 675, 804
SduI GDGCHC 1 cut(s) 614
SfcI CTRYAG 1 cut(s) 247
Sfr303I CCGCGG 1 cut(s) 228
SgrBI CCGCGG 1 cut(s) 228
SinI GGWCC 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 2 cut(s) 127, 693
SsiI CCGC 5 cut(s) 225, 227, 323, 454, 770
SspMI CTAG 2 cut(s) 690, 705
StyD4I CCNGG 3 cut(s) 439, 673, 802
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 3 cut(s) 251, 263, 345
TaiI ACGT 1 cut(s) 202
TaqI TCGA 3 cut(s) 160, 652, 718
TasI AATT 2 cut(s) 127, 693
TatI WGTACW 2 cut(s) 345, 594
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 1 cut(s) 210
TscAI CASTG 3 cut(s) 256, 478, 614
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 3 cut(s) 484, 569, 752
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 2 cut(s) 95, 738
TspRI CASTG 3 cut(s) 256, 478, 614
VneI GTGCAC 1 cut(s) 610
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 1 cut(s) 693
XceI RCATGY 2 cut(s) 394, 648
XspI CTAG 2 cut(s) 690, 705
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.