Rh5BG037700

Cysteine-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000283
Physical Location & Seq
Forward (+)
2706349 .. 2707653
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG037700.1

Sequence Viewer

Length: 1128 bp
ATGGATCAGAAACAGATCAACATAATGCCTTGTTCTCATCATGTGTTCATGTCCTTTGTGTTGCTCTCCATTCTTGGTTTCCATAGCCTCAGCATCGAAGCTCAAGCTCAAGCTATAGCTGTACTTGGTGGCTACTCCCGTTCCTGTTCAAACACAACAACTTTCACTCCGAACAGCACTTACCAGTTCAATCTCAATCTCCTCCTCTCCTATCTCACCTCCAACGCCACCAATGACCTCAGATTTTACAACACCACAGTCGGCGCCCAAGACCCCGGCACGACTGTTTACGGTTCATTTAGTTGCCGTGGCGATGTCACCCCTGAATATTGTCAACAATGCGTGTCTGCTATAGCCACAGAAGGAGTCCAAAAGTATTGCGCCTTGAGCAAAATCTCAATAATATGGTATGCAGATTGCATGTTACGCTACTCAAACACATCCTTCTTTGGCAACTTGGAGAAATCTCCTAAAGTTTACTTTTGGAACACGGGGAATATCACTGAGCCTGACCGCTTCATGCCGCTGCTGGGACAAACTATGAACAGCTTGGTGCGACCTGCTGCTGATGCACCTTCAGGTGTGAAAAAATTAGCAACAAAAGAAGTGAACTTCATAGATTTTCAGATGTTGTACACCCTTGTGCAGTGCACACCAGACCTATCGAGCCCCAGTTGTGAAAATTGTCTTATAGAAGCTATTGCAGCTATTACATTTTCTTTTAATGGAAAGCAAGGGGAAGTAGTCTCATGTCCTAGTTGCAATATTCGATATGAAATCTATCCATTTTACACAGTTCAAGCTGCCACACCTACACCAGCGCCATCGCCACCATCACTGCTTCTTCCTCCCCCTCCTCCAGGTTCAGTAACGAGATCTCAAGGAAATGACCAAATCTCATCCTTAACCATAGTGGCCATTGTTGTTCCAATTGTCATAGTTCTTTTCTTGGTAGGCTGTTTTTTCTTTAAAAGAAAGGCAAGGAAGAAGTATGATGCTATACAAGAGCAAAATGACTCTTTGCAGTTTGATTTGGCTACCATTAAAGCAGCCACAAACCGGTTCTCTGTTAATAACAGGTTAGGCGAAGGTGGCTTTGGAGAGGTCTACAAGGTAACTATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

375

Amino Acids

41.26

Weight (kDa)

7.41

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 49 - 146 9.9e-23 Salt stress response/antifungal
Stress-antifung PF01657 165 - 260 1.1e-08 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 568
AccB1I GGYRCC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 1107
AciI CCGC 2 cut(s) 514, 524
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 915
AcuI CTGAAG 1 cut(s) 561
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 2 cut(s) 123, 635
AfiI CCNNNNNNNGG 3 cut(s) 530, 860, 1059
AgeI ACCGGT 1 cut(s) 1059
AgsI TTSAA 3 cut(s) 150, 190, 800
AjnI CCWGG 1 cut(s) 859
AjuI GAANNNNNNNTTGG 2 cut(s) 1080, 1112
AleI CACNNNNGTG 1 cut(s) 641
AluBI AGCT 8 cut(s) 101, 107, 113, 119, 549, 698, 707, 803
AluI AGCT 8 cut(s) 101, 107, 113, 119, 549, 698, 707, 803
Alw21I GWGCWC 1 cut(s) 653
Alw26I GTCTC 1 cut(s) 751
Alw44I GTGCAC 1 cut(s) 649
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 915
ApaLI GTGCAC 1 cut(s) 649
ApeKI GCWGC 5 cut(s) 526, 563, 704, 803, 1049
AsiGI ACCGGT 1 cut(s) 1059
AspLEI GCGC 3 cut(s) 266, 383, 823
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 2 cut(s) 208, 310
BaeGI GKGCMC 1 cut(s) 653
BalI TGGCCA 1 cut(s) 917
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 671
Bbv12I GWGCWC 1 cut(s) 653
BbvCI CCTCAGC 1 cut(s) 89
BbvI GCAGC 5 cut(s) 513, 550, 716, 790, 1061
BccI CCATC 2 cut(s) 832, 841
BceAI ACGGC 1 cut(s) 291
BciT130I CCWGG 1 cut(s) 861
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 751
BfaI CTAG 1 cut(s) 756
BfmI CTRYAG 2 cut(s) 114, 351
BfoI RGCGCY 2 cut(s) 267, 824
BfuAI ACCTGC 1 cut(s) 568
BglII AGATCT 1 cut(s) 875
BisI GCNGC 6 cut(s) 524, 527, 564, 705, 804, 1050
BlsI GCNGC 6 cut(s) 525, 528, 565, 706, 805, 1051
Bme1390I CCNGG 2 cut(s) 276, 861
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 2 cut(s) 276, 861
BmrI ACTGGG 1 cut(s) 666
BmsI GCATC 3 cut(s) 102, 559, 985
BmuI ACTGGG 1 cut(s) 666
BpmI CTGGAG 1 cut(s) 843
Bpu10I CCTNAGC 1 cut(s) 89
BpuEI CTTGAG 4 cut(s) 87, 93, 406, 864
BpuMI CCSGG 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 274, 307
BsaWI WCCGGW 1 cut(s) 1059
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 3 cut(s) 530, 860, 1059
Bse118I RCCGGY 1 cut(s) 1059
Bse1I ACTGG 2 cut(s) 184, 672
BseBI CCWGG 1 cut(s) 861
BseDI CCNNGG 2 cut(s) 274, 307
BseGI GGATG 2 cut(s) 440, 899
BseLI CCNNNNNNNGG 3 cut(s) 530, 860, 1059
BseMII CTCAG 3 cut(s) 103, 253, 495
BseNI ACTGG 2 cut(s) 184, 672
BseRI GAGGAG 3 cut(s) 191, 194, 846
BseSI GKGCMC 1 cut(s) 653
BseXI GCAGC 5 cut(s) 513, 550, 716, 790, 1061
BseYI CCCAGC 1 cut(s) 529
BsgI GTGCAG 1 cut(s) 665
BshFI GGCC 1 cut(s) 917
BshNI GGYRCC 1 cut(s) 263
BshTI ACCGGT 1 cut(s) 1059
BsiHKAI GWGCWC 1 cut(s) 653
BsiSI CCGG 2 cut(s) 276, 1060
BslFI GGGAC 1 cut(s) 546
BslI CCNNNNNNNGG 3 cut(s) 530, 860, 1059
BsmAI GTCTC 1 cut(s) 751
BsmFI GGGAC 1 cut(s) 546
BsnI GGCC 1 cut(s) 917
Bsp1286I GDGCHC 2 cut(s) 653, 671
Bsp1407I TGTACA 1 cut(s) 633
Bsp143I GATC 3 cut(s) 4, 15, 875
BspACI CCGC 2 cut(s) 514, 524
BspANI GGCC 1 cut(s) 917
BspCNI CTCAG 3 cut(s) 102, 252, 496
BspLI GGNNCC 1 cut(s) 265
BspMI ACCTGC 1 cut(s) 568
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 1059
BsrGI TGTACA 1 cut(s) 633
BsrI ACTGG 2 cut(s) 184, 672
BssAI RCCGGY 1 cut(s) 1059
BssECI CCNNGG 2 cut(s) 274, 307
BssMI GATC 3 cut(s) 4, 15, 875
BssNI GRCGYC 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 861
Bst4CI ACNGT 4 cut(s) 259, 286, 293, 796
BstACI GRCGYC 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 633
BstDEI CTNAG 3 cut(s) 89, 239, 504
BstDSI CCRYGG 1 cut(s) 307
BstENI CCTNNNNNAGG 1 cut(s) 858
BstF5I GGATG 2 cut(s) 440, 899
BstH2I RGCGCY 2 cut(s) 267, 824
BstHHI GCGC 3 cut(s) 266, 383, 823
BstKTI GATC 3 cut(s) 7, 18, 878
BstMAI GTCTC 1 cut(s) 751
BstMBI GATC 3 cut(s) 4, 15, 875
BstMWI GCNNNNNNNGC 5 cut(s) 387, 426, 569, 704, 1092
BstNI CCWGG 1 cut(s) 861
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 274, 859
BstSFI CTRYAG 2 cut(s) 114, 351
BstSLI GKGCMC 1 cut(s) 653
BstV1I GCAGC 5 cut(s) 513, 550, 716, 790, 1061
BstX2I RGATCY 1 cut(s) 875
BstYI RGATCY 1 cut(s) 875
BsuRI GGCC 1 cut(s) 917
BtgI CCRYGG 1 cut(s) 307
BtgZI GCGATG 2 cut(s) 327, 810
BtsCI GGATG 2 cut(s) 440, 899
BtsI GCAGTG 2 cut(s) 653, 836
BtsIMutI CAGTG 3 cut(s) 501, 653, 836
BveI ACCTGC 1 cut(s) 568
CfoI GCGC 3 cut(s) 266, 383, 823
Cfr10I RCCGGY 1 cut(s) 1059
Csp6I GTAC 2 cut(s) 122, 634
CspAI ACCGGT 1 cut(s) 1059
CviAII CATG 5 cut(s) 41, 49, 421, 520, 750
CviQI GTAC 2 cut(s) 122, 634
DdeI CTNAG 3 cut(s) 89, 239, 504
DinI GGCGCC 1 cut(s) 265
DpnI GATC 3 cut(s) 6, 17, 877
DpnII GATC 3 cut(s) 4, 15, 875
DraI TTTAAA 1 cut(s) 970
EaeI YGGCCR 1 cut(s) 915
Eco24I GRGCYC 1 cut(s) 671
Eco57I CTGAAG 1 cut(s) 561
EcoNI CCTNNNNNAGG 1 cut(s) 858
EcoRII CCWGG 1 cut(s) 859
EcoT38I GRGCYC 1 cut(s) 671
EgeI GGCGCC 1 cut(s) 265
EheI GGCGCC 1 cut(s) 265
FaeI CATG 5 cut(s) 44, 52, 424, 523, 753
FaqI GGGAC 1 cut(s) 546
FatI CATG 5 cut(s) 40, 48, 420, 519, 749
FblI GTMKAC 1 cut(s) 1107
Fnu4HI GCNGC 6 cut(s) 524, 527, 564, 705, 804, 1050
FokI GGATG 2 cut(s) 427, 886
FriOI GRGCYC 1 cut(s) 671
Fsp4HI GCNGC 6 cut(s) 524, 527, 564, 705, 804, 1050
FspBI CTAG 1 cut(s) 756
GlaI GCGC 3 cut(s) 265, 382, 822
GluI GCNGC 6 cut(s) 524, 527, 564, 705, 804, 1050
GsaI CCCAGC 1 cut(s) 533
GsuI CTGGAG 1 cut(s) 843
HaeII RGCGCY 2 cut(s) 267, 824
HaeIII GGCC 1 cut(s) 917
HapII CCGG 2 cut(s) 276, 1060
HhaI GCGC 3 cut(s) 266, 383, 823
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 5 cut(s) 44, 52, 424, 523, 753
Hin6I GCGC 3 cut(s) 264, 381, 821
HinP1I GCGC 3 cut(s) 264, 381, 821
HincII GTYRAC 1 cut(s) 335
HindII GTYRAC 1 cut(s) 335
HinfI GANTC 2 cut(s) 366, 1016
HpaII CCGG 2 cut(s) 276, 1060
HphI GGTGA 2 cut(s) 208, 310
Hpy166II GTNNAC 7 cut(s) 289, 335, 478, 610, 636, 651, 1108
Hpy188I TCNGA 4 cut(s) 9, 171, 242, 627
Hpy8I GTNNAC 7 cut(s) 289, 335, 478, 610, 636, 651, 1108
HpyAV CCTTC 4 cut(s) 356, 454, 585, 1082
HpyCH4III ACNGT 4 cut(s) 259, 286, 293, 796
HpyCH4V TGCA 8 cut(s) 413, 420, 572, 646, 651, 704, 762, 1024
HpyF10VI GCNNNNNNNGC 5 cut(s) 387, 426, 569, 704, 1092
HpyF3I CTNAG 3 cut(s) 89, 239, 504
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 5 cut(s) 44, 52, 424, 523, 753
HspAI GCGC 3 cut(s) 264, 381, 821
KasI GGCGCC 1 cut(s) 263
Kzo9I GATC 3 cut(s) 4, 15, 875
Lsp1109I GCAGC 5 cut(s) 513, 550, 716, 790, 1061
LweI GCATC 3 cut(s) 102, 559, 985
MaeI CTAG 1 cut(s) 756
MaeIII GTNAC 4 cut(s) 316, 423, 868, 1114
MalI GATC 3 cut(s) 6, 17, 877
MboI GATC 3 cut(s) 4, 15, 875
MboII GAAGA 2 cut(s) 836, 997
MfeI CAATTG 1 cut(s) 930
MflI RGATCY 1 cut(s) 875
MhlI GDGCHC 2 cut(s) 653, 671
MlsI TGGCCA 1 cut(s) 917
MluCI AATT 3 cut(s) 590, 682, 930
MluNI TGGCCA 1 cut(s) 917
Mly113I GGCGCC 1 cut(s) 264
MlyI GAGTC 2 cut(s) 375, 1010
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 9 cut(s) 98, 212, 215, 229, 248, 858, 864, 867, 1096
Mox20I TGGCCA 1 cut(s) 917
MscI TGGCCA 1 cut(s) 917
MseI TTAA 5 cut(s) 723, 905, 969, 1044, 1071
MslI CAYNNNNRTG 1 cut(s) 641
Msp20I TGGCCA 1 cut(s) 917
MspA1I CMGCKG 1 cut(s) 526
MspI CCGG 2 cut(s) 276, 1060
MspR9I CCNGG 2 cut(s) 276, 861
MunI CAATTG 1 cut(s) 930
MvaI CCWGG 1 cut(s) 861
MwoI GCNNNNNNNGC 5 cut(s) 387, 426, 569, 704, 1092
NarI GGCGCC 1 cut(s) 264
NciI CCSGG 1 cut(s) 276
NdeII GATC 3 cut(s) 4, 15, 875
NlaIII CATG 5 cut(s) 44, 52, 424, 523, 753
NlaIV GGNNCC 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 316
NspI RCATGY 1 cut(s) 424
OliI CACNNNNGTG 1 cut(s) 641
PinAI ACCGGT 1 cut(s) 1059
PkrI GCNGC 6 cut(s) 525, 528, 565, 706, 805, 1051
PleI GAGTC 2 cut(s) 374, 1010
PluTI GGCGCC 1 cut(s) 267
PpsI GAGTC 2 cut(s) 374, 1010
Psp6I CCWGG 1 cut(s) 859
PspFI CCCAGC 1 cut(s) 529
PspGI CCWGG 1 cut(s) 859
PspN4I GGNNCC 1 cut(s) 265
PsrI GAACNNNNNNTAC 2 cut(s) 164, 196
PsuI RGATCY 1 cut(s) 875
RsaI GTAC 2 cut(s) 123, 635
RsaNI GTAC 2 cut(s) 122, 634
RseI CAYNNNNRTG 1 cut(s) 641
SaqAI TTAA 5 cut(s) 723, 905, 969, 1044, 1071
SatI GCNGC 6 cut(s) 524, 527, 564, 705, 804, 1050
Sau3AI GATC 3 cut(s) 4, 15, 875
SchI GAGTC 2 cut(s) 375, 1010
ScrFI CCNGG 2 cut(s) 276, 861
SduI GDGCHC 2 cut(s) 653, 671
SfaNI GCATC 3 cut(s) 102, 559, 985
SfcI CTRYAG 2 cut(s) 114, 351
SfoI GGCGCC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 641
SmlI CTYRAG 4 cut(s) 102, 108, 385, 879
SmoI CTYRAG 4 cut(s) 102, 108, 385, 879
Sse9I AATT 3 cut(s) 590, 682, 930
SsiI CCGC 2 cut(s) 514, 524
SspDI GGCGCC 1 cut(s) 263
SspI AATATT 2 cut(s) 329, 766
SspMI CTAG 1 cut(s) 756
StyD4I CCNGG 2 cut(s) 274, 859
TaaI ACNGT 4 cut(s) 259, 286, 293, 796
TaqI TCGA 3 cut(s) 96, 665, 769
TasI AATT 3 cut(s) 590, 682, 930
TatI WGTACW 2 cut(s) 121, 633
TauI GCSGC 1 cut(s) 526
Tru1I TTAA 5 cut(s) 723, 905, 969, 1044, 1071
Tru9I TTAA 5 cut(s) 723, 905, 969, 1044, 1071
TscAI CASTG 3 cut(s) 508, 653, 843
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 5 cut(s) 526, 563, 704, 803, 1049
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 6 cut(s) 37, 285, 508, 557, 604, 789
TspRI CASTG 3 cut(s) 508, 653, 843
VneI GTGCAC 1 cut(s) 649
XagI CCTNNNNNAGG 1 cut(s) 858
XceI RCATGY 1 cut(s) 424
XmiI GTMKAC 1 cut(s) 1107
XspI CTAG 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.