Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8336297.1

Orthogroup ID

OG0000283

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 800

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8336297.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 800 bp

ctgtagttggtggctactcccgttcctgttcaaacacaacaactttcactccgaacagcacttaccagttcaatctcaatctcctcctctcctatctcacctccaacgccaccaatgacctcagattttacaacaccacagtcggcgcccaagaccccggcacgactgtttacggttcatttagttgccgtggcgatgtcacccctgaaatatgtcaacaatgtgtgtctgctatagccacagaaggagtccaaaattattgccccttgagcaaaatctcaataatatggtatgcagattgcatgttacgctactcaaacacatccttctttggcaacccggagacatctcctcaagtttccttcttcaacacggggaatatcactgagcctgaccgcttcatgccgctgctgggacaaactctgaagagcttggtgggacctgctgctggtgcaccttcaggtgtgaaaaaattcgcaacaaaagaagtgagcttcacagattttcagcagttgtacacccttgtgcagtgcacaccagacctatcgagcctaggttgtgaaagatgtcttacagcagctattgcagctattccagtttctttttatggaaagcaagggggagtagtcttatttcctactgtttatgttcgatatgaaatctatccattttacacagttcaagctgccacacctccaccagcgccatcgccaccatcactgcttcttcctccccctcctccaggttcagtaacgagatctcaaggtaaaatgaatagcaagagtactatagctaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr Stress-antifung

Protein Analysis

265

Amino Acids

28.56

Weight (kDa)

8.07

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca	FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica	MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica	Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis	pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis	RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata	RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora	Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa	Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha	Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana	Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	145
AciI	CCGC	2 cut(s)	396, 406
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	2 cut(s)	443, 445
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	2 cut(s)	517, 786
AfiI	CCNNNNNNNGG	3 cut(s)	412, 448, 742
AgsI	TTSAA	4 cut(s)	32, 72, 369, 682
AjnI	CCWGG	1 cut(s)	741
AleI	CACNNNNGTG	1 cut(s)	523
AluBI	AGCT	6 cut(s)	431, 494, 580, 589, 685, 793
AluI	AGCT	6 cut(s)	431, 494, 580, 589, 685, 793
Alw21I	GWGCWC	2 cut(s)	456, 535
Alw26I	GTCTC	1 cut(s)	337
Alw44I	GTGCAC	2 cut(s)	452, 531
ApaLI	GTGCAC	2 cut(s)	452, 531
ApeKI	GCWGC	5 cut(s)	408, 445, 577, 586, 685
ApoI	RAATTY	1 cut(s)	472
Asp700I	GAANNNNTTC	1 cut(s)	472
AspA2I	CCTAGG	1 cut(s)	552
AspLEI	GCGC	2 cut(s)	148, 705
AspS9I	GGNCC	1 cut(s)	439
AsuC2I	CCSGG	2 cut(s)	158, 340
AsuHPI	GGTGA	2 cut(s)	90, 192
AvaII	GGWCC	1 cut(s)	439
AvrII	CCTAGG	1 cut(s)	552
BaeGI	GKGCMC	2 cut(s)	456, 535
BanI	GGYRCC	1 cut(s)	145
Bbv12I	GWGCWC	2 cut(s)	456, 535
BbvI	GCAGC	5 cut(s)	395, 432, 589, 598, 672
BccI	CCATC	2 cut(s)	714, 723
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	743
BcnI	CCSGG	2 cut(s)	158, 340
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	1 cut(s)	553
BfmI	CTRYAG	3 cut(s)	2, 233, 788
BfoI	RGCGCY	2 cut(s)	149, 706
BfuAI	ACCTGC	1 cut(s)	450
BglII	AGATCT	1 cut(s)	757
BisI	GCNGC	6 cut(s)	406, 409, 446, 578, 587, 686
BlnI	CCTAGG	1 cut(s)	552
BlsI	GCNGC	6 cut(s)	407, 410, 447, 579, 588, 687
BmcAI	AGTACT	1 cut(s)	786
Bme1390I	CCNGG	3 cut(s)	158, 340, 743
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	2 cut(s)	147, 440
BmrFI	CCNGG	3 cut(s)	158, 340, 743
BpmI	CTGGAG	1 cut(s)	725
BpuEI	CTTGAG	3 cut(s)	288, 338, 746
BpuMI	CCSGG	2 cut(s)	158, 340
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	156, 189, 552
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	412, 448, 742
Bse1I	ACTGG	2 cut(s)	66, 595
BseBI	CCWGG	1 cut(s)	743
BseDI	CCNNGG	3 cut(s)	156, 189, 552
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	3 cut(s)	412, 448, 742
BseMII	CTCAG	2 cut(s)	135, 377
BseNI	ACTGG	2 cut(s)	66, 595
BseRI	GAGGAG	4 cut(s)	73, 76, 341, 728
BseSI	GKGCMC	2 cut(s)	456, 535
BseXI	GCAGC	5 cut(s)	395, 432, 589, 598, 672
BseYI	CCCAGC	1 cut(s)	411
BsgI	GTGCAG	1 cut(s)	547
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	2 cut(s)	456, 535
BsiSI	CCGG	2 cut(s)	158, 340
BslFI	GGGAC	2 cut(s)	428, 452
BslI	CCNNNNNNNGG	3 cut(s)	412, 448, 742
BsmAI	GTCTC	1 cut(s)	337
BsmFI	GGGAC	2 cut(s)	428, 452
Bsp1286I	GDGCHC	2 cut(s)	456, 535
Bsp1407I	TGTACA	1 cut(s)	515
Bsp143I	GATC	1 cut(s)	757
BspACI	CCGC	2 cut(s)	396, 406
BspCNI	CTCAG	2 cut(s)	134, 378
BspLI	GGNNCC	2 cut(s)	147, 440
BspMI	ACCTGC	1 cut(s)	450
BspQI	GCTCTTC	1 cut(s)	421
BspT107I	GGYRCC	1 cut(s)	145
BsrGI	TGTACA	1 cut(s)	515
BsrI	ACTGG	2 cut(s)	66, 595
BssECI	CCNNGG	3 cut(s)	156, 189, 552
BssMI	GATC	1 cut(s)	757
BssNI	GRCGYC	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	743
Bst4CI	ACNGT	5 cut(s)	141, 168, 175, 642, 678
Bst6I	CTCTTC	1 cut(s)	421
BstACI	GRCGYC	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	583
BstAUI	TGTACA	1 cut(s)	515
BstDEI	CTNAG	2 cut(s)	121, 386
BstDSI	CCRYGG	1 cut(s)	189
BstENI	CCTNNNNNAGG	1 cut(s)	740
BstF5I	GGATG	1 cut(s)	322
BstH2I	RGCGCY	2 cut(s)	149, 706
BstHHI	GCGC	2 cut(s)	148, 705
BstKTI	GATC	1 cut(s)	760
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	1 cut(s)	757
BstMWI	GCNNNNNNNGC	5 cut(s)	269, 308, 451, 583, 586
BstNI	CCWGG	1 cut(s)	743
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	3 cut(s)	156, 338, 741
BstSFI	CTRYAG	3 cut(s)	2, 233, 788
BstSLI	GKGCMC	2 cut(s)	456, 535
BstV1I	GCAGC	5 cut(s)	395, 432, 589, 598, 672
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
BtgI	CCRYGG	1 cut(s)	189
BtgZI	GCGATG	2 cut(s)	209, 692
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	2 cut(s)	535, 718
BtsIMutI	CAGTG	3 cut(s)	383, 535, 718
BveI	ACCTGC	1 cut(s)	450
CfoI	GCGC	2 cut(s)	148, 705
Cfr13I	GGNCC	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	516, 785
CviAII	CATG	2 cut(s)	303, 402
CviQI	GTAC	2 cut(s)	516, 785
DdeI	CTNAG	2 cut(s)	121, 386
DinI	GGCGCC	1 cut(s)	147
DpnI	GATC	1 cut(s)	759
DpnII	GATC	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	439
Eco57I	CTGAAG	2 cut(s)	443, 445
EcoNI	CCTNNNNNAGG	1 cut(s)	740
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	552
EgeI	GGCGCC	1 cut(s)	147
EheI	GGCGCC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	2 cut(s)	306, 405
FaqI	GGGAC	2 cut(s)	428, 452
FatI	CATG	2 cut(s)	302, 401
Fnu4HI	GCNGC	6 cut(s)	406, 409, 446, 578, 587, 686
FokI	GGATG	1 cut(s)	309
Fsp4HI	GCNGC	6 cut(s)	406, 409, 446, 578, 587, 686
FspBI	CTAG	1 cut(s)	553
GlaI	GCGC	2 cut(s)	147, 704
GluI	GCNGC	6 cut(s)	406, 409, 446, 578, 587, 686
GsaI	CCCAGC	1 cut(s)	415
GsuI	CTGGAG	1 cut(s)	725
HaeII	RGCGCY	2 cut(s)	149, 706
HapII	CCGG	2 cut(s)	158, 340
HhaI	GCGC	2 cut(s)	148, 705
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	306, 405
Hin6I	GCGC	2 cut(s)	146, 703
HinP1I	GCGC	2 cut(s)	146, 703
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	2 cut(s)	158, 340
HphI	GGTGA	2 cut(s)	90, 192
Hpy166II	GTNNAC	5 cut(s)	171, 217, 454, 518, 533
Hpy188I	TCNGA	3 cut(s)	53, 124, 425
Hpy8I	GTNNAC	5 cut(s)	171, 217, 454, 518, 533
HpyAV	CCTTC	4 cut(s)	238, 336, 372, 467
HpyCH4III	ACNGT	5 cut(s)	141, 168, 175, 642, 678
HpyCH4V	TGCA	6 cut(s)	295, 302, 454, 528, 533, 586
HpyF10VI	GCNNNNNNNGC	5 cut(s)	269, 308, 451, 583, 586
HpyF3I	CTNAG	2 cut(s)	121, 386
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	2 cut(s)	306, 405
HspAI	GCGC	2 cut(s)	146, 703
KasI	GGCGCC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	757
LguI	GCTCTTC	1 cut(s)	421
Lsp1109I	GCAGC	5 cut(s)	395, 432, 589, 598, 672
MaeI	CTAG	1 cut(s)	553
MaeIII	GTNAC	3 cut(s)	198, 305, 750
MalI	GATC	1 cut(s)	759
MboI	GATC	1 cut(s)	757
MboII	GAAGA	3 cut(s)	357, 438, 718
MflI	RGATCY	1 cut(s)	757
MhlI	GDGCHC	2 cut(s)	456, 535
MluCI	AATT	3 cut(s)	255, 472, 795
Mly113I	GGCGCC	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	9 cut(s)	94, 97, 111, 130, 362, 704, 740, 746, 749
MroXI	GAANNNNTTC	1 cut(s)	472
MseI	TTAA	1 cut(s)	798
MslI	CAYNNNNRTG	1 cut(s)	523
MspA1I	CMGCKG	1 cut(s)	408
MspI	CCGG	2 cut(s)	158, 340
MspR9I	CCNGG	3 cut(s)	158, 340, 743
MvaI	CCWGG	1 cut(s)	743
MwoI	GCNNNNNNNGC	5 cut(s)	269, 308, 451, 583, 586
NarI	GGCGCC	1 cut(s)	146
NciI	CCSGG	2 cut(s)	158, 340
NdeII	GATC	1 cut(s)	757
NlaIII	CATG	2 cut(s)	306, 405
NlaIV	GGNNCC	2 cut(s)	147, 440
NmuCI	GTSAC	1 cut(s)	198
NspI	RCATGY	1 cut(s)	306
OliI	CACNNNNGTG	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	472
PkrI	GCNGC	6 cut(s)	407, 410, 447, 579, 588, 687
PleI	GAGTC	1 cut(s)	256
PluTI	GGCGCC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	439
Psp5II	RGGWCCY	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	741
PspFI	CCCAGC	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	741
PspN4I	GGNNCC	2 cut(s)	147, 440
PspPI	GGNCC	1 cut(s)	439
PspPPI	RGGWCCY	1 cut(s)	439
PsrI	GAACNNNNNNTAC	2 cut(s)	46, 78
PsuI	RGATCY	1 cut(s)	757
RsaI	GTAC	2 cut(s)	517, 786
RsaNI	GTAC	2 cut(s)	516, 785
RseI	CAYNNNNRTG	1 cut(s)	523
SapI	GCTCTTC	1 cut(s)	421
SaqAI	TTAA	1 cut(s)	798
SatI	GCNGC	6 cut(s)	406, 409, 446, 578, 587, 686
Sau3AI	GATC	1 cut(s)	757
Sau96I	GGNCC	1 cut(s)	439
ScaI	AGTACT	1 cut(s)	786
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	3 cut(s)	158, 340, 743
SduI	GDGCHC	2 cut(s)	456, 535
SfcI	CTRYAG	3 cut(s)	2, 233, 788
SfoI	GGCGCC	1 cut(s)	147
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	523
SmlI	CTYRAG	3 cut(s)	267, 353, 761
SmoI	CTYRAG	3 cut(s)	267, 353, 761
Sse9I	AATT	3 cut(s)	255, 472, 795
SsiI	CCGC	2 cut(s)	396, 406
SspDI	GGCGCC	1 cut(s)	145
SspMI	CTAG	1 cut(s)	553
StyD4I	CCNGG	3 cut(s)	156, 338, 741
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	5 cut(s)	141, 168, 175, 642, 678
TaqI	TCGA	2 cut(s)	547, 651
TasI	AATT	3 cut(s)	255, 472, 795
TatI	WGTACW	2 cut(s)	515, 784
TauI	GCSGC	1 cut(s)	408
Tru1I	TTAA	1 cut(s)	798
Tru9I	TTAA	1 cut(s)	798
TscAI	CASTG	3 cut(s)	390, 535, 725
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	5 cut(s)	408, 445, 577, 586, 685
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	4 cut(s)	167, 390, 671, 787
TspRI	CASTG	3 cut(s)	390, 535, 725
VneI	GTGCAC	2 cut(s)	452, 531
VpaK11BI	GGWCC	1 cut(s)	439
XagI	CCTNNNNNAGG	1 cut(s)	740
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	1 cut(s)	306
XmaJI	CCTAGG	1 cut(s)	552
XmnI	GAANNNNTTC	1 cut(s)	472
XspI	CTAG	1 cut(s)	553
ZrmI	AGTACT	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.