RLG00000008668

Cysteine-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000283
Physical Location & Seq
Forward (+)
34654058 .. 34654861
804 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008668

Sequence Viewer

Length: 804 bp
ATGGCCCTTGTGGTGCTCCCCATTCTTGGCTTCCTTAGCGTTAGGGTTGAAGCTCAAGCACCAACTTACCTGTATCATATCTGTTCAAACACAACCAGTTTCACTCCCAACAGCACCTACCAGTCTAATCTTAATCTTCTCCTCTCTTCTCTCACATCCAACGCCACACGTGATATTGGATTCTACTACACCACAGCGGGCGTGCAAAACTCAACTTCAGAAGTAGTTTACGGTTCTTTCCTATGCCGTGGAGATCTCACCCCAGACTTGTGCCAAGAATGTGTTACTACTATAGCCAAAGATGGTGTCCAAAAGTACTGCCCCTTGGAAAAAATTTCAATAATATGGTACGATGAGTGCATGTTGCGCTACACAAATCAGTCTTTCTTGAACTGGTTGGACAAAGATCCTCAAATTCCCATGGTGGACATTTGGAATGTCACTGACCCTACCCACTTTGCGCAGCTGCTAGCAGAAACAATCAATGGCTTGGTGGCTCTGGCTTCAAATGCACCATCTGGTGCTAAAAAGTATGCAACGAAAGAAGCACCTTTCACAGGGTTTCAGCAGTTGTACAGCCTTGTTCAGTGCACCCCAGACATATCAAGCACAAGTTGTGATACATGTCTTCGAGAAGCTATTGCGCAACTTTCAGGTTGTTGTACTGGAAAGGAAAGTGCTACAATTTTATCTCCTAGTTGTAATGTTCGATATGAAGTTTATCCATTTTATACAACTGAAGCAGTCACACCTTCACCCCTCCCACAACCTCCGACTCTTCCTCCCCACCTCCAGGTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

268

Amino Acids

29.38

Weight (kDa)

4.79

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 28 - 127 2.5e-25 Salt stress response/antifungal
Stress-antifung PF01657 148 - 240 4.4e-12 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 462, 645
AciI CCGC 1 cut(s) 197
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 2 cut(s) 333, 414
AcuI CTGAAG 2 cut(s) 201, 759
AcvI CACGTG 1 cut(s) 170
AfaI GTAC 4 cut(s) 317, 350, 575, 664
AfiI CCNNNNNNNGG 3 cut(s) 26, 557, 793
AflIII ACRYGT 2 cut(s) 167, 623
AgsI TTSAA 5 cut(s) 50, 87, 339, 391, 507
AjnI CCWGG 1 cut(s) 792
AluBI AGCT 3 cut(s) 53, 466, 638
AluI AGCT 3 cut(s) 53, 466, 638
Alw21I GWGCWC 2 cut(s) 18, 593
Alw44I GTGCAC 1 cut(s) 589
AlwI GGATC 1 cut(s) 401
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 589
ApeKI GCWGC 2 cut(s) 463, 466
ApoI RAATTY 2 cut(s) 333, 414
ArsI GACNNNNNNTTYG 2 cut(s) 291, 323
AspLEI GCGC 3 cut(s) 369, 463, 646
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 250, 747
AsuNHI GCTAGC 1 cut(s) 469
BaeGI GKGCMC 1 cut(s) 593
BbrPI CACGTG 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 620
Bbv12I GWGCWC 2 cut(s) 18, 593
BbvI GCAGC 2 cut(s) 453, 475
BccI CCATC 2 cut(s) 296, 523
BceAI ACGGC 1 cut(s) 231
BciT130I CCWGG 1 cut(s) 794
BfaI CTAG 2 cut(s) 470, 696
BfmI CTRYAG 1 cut(s) 291
BglII AGATCT 1 cut(s) 253
BisI GCNGC 2 cut(s) 464, 467
BlsI GCNGC 2 cut(s) 465, 468
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 1 cut(s) 794
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 794
BmtI GCTAGC 1 cut(s) 473
BpiI GAAGAC 1 cut(s) 620
BpmI CTGGAG 1 cut(s) 776
Bpu10I CCTNAGC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 170
BsaJI CCNNGG 3 cut(s) 247, 324, 420
BsaXI ACNNNNNCTCC 2 cut(s) 766, 796
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 557, 793
Bse1I ACTGG 4 cut(s) 96, 121, 398, 670
BseBI CCWGG 1 cut(s) 794
BseDI CCNNGG 3 cut(s) 247, 324, 420
BseGI GGATG 1 cut(s) 155
BseLI CCNNNNNNNGG 3 cut(s) 26, 557, 793
BseNI ACTGG 4 cut(s) 96, 121, 398, 670
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 593
BseXI GCAGC 2 cut(s) 453, 475
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 2 cut(s) 18, 593
BslI CCNNNNNNNGG 3 cut(s) 26, 557, 793
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 18, 593
Bsp1407I TGTACA 1 cut(s) 573
Bsp143I GATC 2 cut(s) 253, 406
Bsp19I CCATGG 1 cut(s) 420
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 5
BspOI GCTAGC 1 cut(s) 473
BspPI GGATC 1 cut(s) 401
BsrGI TGTACA 1 cut(s) 573
BsrI ACTGG 4 cut(s) 96, 121, 398, 670
BssECI CCNNGG 3 cut(s) 247, 324, 420
BssMI GATC 2 cut(s) 253, 406
BssT1I CCWWGG 2 cut(s) 324, 420
Bst2UI CCWGG 1 cut(s) 794
Bst4CI ACNGT 1 cut(s) 233
Bst6I CTCTTC 2 cut(s) 151, 783
BstAUI TGTACA 1 cut(s) 573
BstBAI YACGTR 1 cut(s) 170
BstC8I GCNNGC 3 cut(s) 199, 203, 471
BstDEI CTNAG 1 cut(s) 35
BstDSI CCRYGG 2 cut(s) 247, 420
BstENI CCTNNNNNAGG 1 cut(s) 555
BstF5I GGATG 1 cut(s) 155
BstHHI GCGC 3 cut(s) 369, 463, 646
BstKTI GATC 2 cut(s) 256, 409
BstMBI GATC 2 cut(s) 253, 406
BstMWI GCNNNNNNNGC 3 cut(s) 36, 366, 509
BstNI CCWGG 1 cut(s) 794
BstNSI RCATGY 2 cut(s) 364, 627
BstSCI CCNGG 1 cut(s) 792
BstSFI CTRYAG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 593
BstV1I GCAGC 2 cut(s) 453, 475
BstV2I GAAGAC 1 cut(s) 620
BstX2I RGATCY 2 cut(s) 253, 406
BstYI RGATCY 2 cut(s) 253, 406
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 247, 420
BtsCI GGATG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 441, 593
Cac8I GCNNGC 3 cut(s) 199, 203, 471
CfoI GCGC 3 cut(s) 369, 463, 646
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 4 cut(s) 316, 349, 574, 663
CviAII CATG 3 cut(s) 361, 421, 624
CviQI GTAC 4 cut(s) 316, 349, 574, 663
DdeI CTNAG 1 cut(s) 35
DpnI GATC 2 cut(s) 255, 408
DpnII GATC 2 cut(s) 253, 406
Eam1104I CTCTTC 2 cut(s) 151, 783
EarI CTCTTC 2 cut(s) 151, 783
Eco130I CCWWGG 2 cut(s) 324, 420
Eco57I CTGAAG 2 cut(s) 201, 759
Eco72I CACGTG 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoRII CCWGG 1 cut(s) 792
EcoT14I CCWWGG 2 cut(s) 324, 420
ErhI CCWWGG 2 cut(s) 324, 420
FaeI CATG 3 cut(s) 364, 424, 627
FatI CATG 3 cut(s) 360, 420, 623
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 464, 467
FokI GGATG 1 cut(s) 142
Fsp4HI GCNGC 2 cut(s) 464, 467
FspBI CTAG 2 cut(s) 470, 696
FspI TGCGCA 2 cut(s) 462, 645
GlaI GCGC 3 cut(s) 368, 462, 645
GluI GCNGC 2 cut(s) 464, 467
GsuI CTGGAG 1 cut(s) 776
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 3 cut(s) 369, 463, 646
Hin1II CATG 3 cut(s) 364, 424, 627
Hin6I GCGC 3 cut(s) 367, 461, 644
HinP1I GCGC 3 cut(s) 367, 461, 644
HinfI GANTC 2 cut(s) 180, 775
HphI GGTGA 2 cut(s) 250, 747
Hpy166II GTNNAC 3 cut(s) 229, 427, 591
Hpy188I TCNGA 2 cut(s) 220, 774
Hpy188III TCNNGA 2 cut(s) 388, 632
Hpy8I GTNNAC 3 cut(s) 229, 427, 591
HpyAV CCTTC 1 cut(s) 762
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 5 cut(s) 205, 360, 512, 536, 591
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 366, 509
HpyF3I CTNAG 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 3 cut(s) 364, 424, 627
HspAI GCGC 3 cut(s) 367, 461, 644
Kzo9I GATC 2 cut(s) 253, 406
LmnI GCTCC 1 cut(s) 21
Lsp1109I GCAGC 2 cut(s) 453, 475
MaeI CTAG 2 cut(s) 470, 696
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 3 cut(s) 283, 439, 745
MalI GATC 2 cut(s) 255, 408
MboI GATC 2 cut(s) 253, 406
MboII GAAGA 4 cut(s) 128, 138, 620, 770
MflI RGATCY 2 cut(s) 253, 406
MhlI GDGCHC 2 cut(s) 18, 593
MluCI AATT 3 cut(s) 333, 414, 684
MlyI GAGTC 1 cut(s) 769
MmeI TCCRAC 3 cut(s) 183, 378, 797
MnlI CCTC 6 cut(s) 152, 420, 770, 780, 792, 800
MseI TTAA 1 cut(s) 132
MspA1I CMGCKG 2 cut(s) 197, 466
MspR9I CCNGG 1 cut(s) 794
MvaI CCWGG 1 cut(s) 794
MwoI GCNNNNNNNGC 3 cut(s) 36, 366, 509
NcoI CCATGG 1 cut(s) 420
NdeII GATC 2 cut(s) 253, 406
NheI GCTAGC 1 cut(s) 469
NlaIII CATG 3 cut(s) 364, 424, 627
NmuCI GTSAC 2 cut(s) 439, 745
NsbI TGCGCA 2 cut(s) 462, 645
NspI RCATGY 2 cut(s) 364, 627
PciI ACATGT 1 cut(s) 623
PfeI GAWTC 1 cut(s) 180
PkrI GCNGC 2 cut(s) 465, 468
PleI GAGTC 1 cut(s) 769
PmaCI CACGTG 1 cut(s) 170
PmlI CACGTG 1 cut(s) 170
PpsI GAGTC 1 cut(s) 769
Ppu21I YACGTR 1 cut(s) 170
PscI ACATGT 1 cut(s) 623
Psp6I CCWGG 1 cut(s) 792
PspCI CACGTG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 792
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 2 cut(s) 253, 406
PvuII CAGCTG 1 cut(s) 466
RsaI GTAC 4 cut(s) 317, 350, 575, 664
RsaNI GTAC 4 cut(s) 316, 349, 574, 663
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 2 cut(s) 464, 467
Sau3AI GATC 2 cut(s) 253, 406
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 317
SchI GAGTC 1 cut(s) 769
ScrFI CCNGG 1 cut(s) 794
SduI GDGCHC 2 cut(s) 18, 593
SfcI CTRYAG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 3 cut(s) 333, 414, 684
SsiI CCGC 1 cut(s) 197
SspMI CTAG 2 cut(s) 470, 696
StyD4I CCNGG 1 cut(s) 792
StyI CCWWGG 2 cut(s) 324, 420
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 1 cut(s) 172
TaqI TCGA 2 cut(s) 631, 709
TasI AATT 3 cut(s) 333, 414, 684
TatI WGTACW 3 cut(s) 315, 573, 662
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 2 cut(s) 448, 593
TseFI GTSAC 2 cut(s) 439, 745
TseI GCWGC 2 cut(s) 463, 466
Tsp45I GTSAC 2 cut(s) 439, 745
TspDTI ATGAA 1 cut(s) 729
TspRI CASTG 2 cut(s) 448, 593
VneI GTGCAC 1 cut(s) 589
XagI CCTNNNNNAGG 1 cut(s) 555
XapI RAATTY 2 cut(s) 333, 414
XceI RCATGY 2 cut(s) 364, 627
XspI CTAG 2 cut(s) 470, 696
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.