Rh5DG037100

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
2740955 .. 2752846
11892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG037100.1

Sequence Viewer

Length: 963 bp
ATGCCTTGTTCTCACATATCCTTTGTGTTGCTTTCCATTCTTGGTTTCCTTAGCCTCAGCATCGAAGCTGAAGTTGATTACAGGTACCGTTTCTGTTCAAACACAACGACTTTCACTCCGAACAGCACTTACCAGTTCAATCTCAATCTCCTCCTCTCCTATCTCACCTCCAACGCCACCAATGACCTCGGATTCCACAACACCACAGTCGGCTCCCAAGACCCCAGCACGACTGTCTACGGTTCATTTAATTGCCGTGGCGATGTCACCCCTGAAATGTGTCAAGAATGTGTGTCTACTATAGCCAGAGAAGGAGTCCAAAAGTACTGCCCCTTGAGAAAAATCTCAATAATATGGTACGACTTCTGCATGTTACGCTACTCAAACACATCCTTTTTTGGCAACTTGGAGATATCTCCTCAAGTTTCCTTCTTCAACACGGGGAAAATCACGGAGCCTGACCGCTTCATGCAGCTGCTGGGACAAACTATGAACAGCTTGGTGGTTCCTGCTGCTAATGCACCTTCAGGTGCGACAAAATTCGCAACAAAAGAAGTGAACTTCTCAGATTTTCAGCTGTTGTACACCCTTGTGCAGTGCACACCAGACCTGTCGAGCCAAAGTTGTGAACGTTGTCTTCGAGGAGCTATTGGAGTTCTTCCAGTTTGTTGTCATGGAAAGCAAGGGGGAAATGTCTTATTTCCTAGTTGTAATATTCGACATGAAATCTATCCATTTTACACAGCTCAAGCTGCCACACCTCAACCAGCGTTATCGCCACCATCACTGCTTCTTCCTCCCCCTCCTCCAGGTCCAGTAACGAGATCTCAAGCGGCATGGACAAGTACAACTCAGAGCTTAGAGAATCAAGCACTTCTGGATCAAGATCTGTTGAAGTATCAGGAAATGACGCTTCATTTACTCGGCTTTACACTCGCTAACATCACCTCCATGGTTTTGTAA

Protein Analysis

320

Amino Acids

35.37

Weight (kDa)

5.72

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 32 - 129 2e-24 Salt stress response/antifungal
Stress-antifung PF01657 148 - 242 2.1e-10 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 84
AccI GTMKAC 2 cut(s) 237, 296
AciI CCGC 2 cut(s) 463, 833
AclI AACGTT 1 cut(s) 631
AclWI GGATC 1 cut(s) 888
AcsI RAATTY 1 cut(s) 539
AcuI CTGAAG 2 cut(s) 90, 510
AfaI GTAC 5 cut(s) 86, 326, 359, 584, 847
AfiI CCNNNNNNNGG 1 cut(s) 809
AgsI TTSAA 4 cut(s) 99, 139, 436, 895
AjnI CCWGG 1 cut(s) 808
AleI CACNNNNGTG 1 cut(s) 590
AluBI AGCT 8 cut(s) 68, 475, 498, 577, 647, 746, 752, 858
AluI AGCT 8 cut(s) 68, 475, 498, 577, 647, 746, 752, 858
Alw21I GWGCWC 1 cut(s) 602
Alw44I GTGCAC 1 cut(s) 598
AlwI GGATC 1 cut(s) 888
AlwNI CAGNNNCTG 1 cut(s) 478
ApaLI GTGCAC 1 cut(s) 598
ApeKI GCWGC 4 cut(s) 472, 475, 512, 752
ApoI RAATTY 1 cut(s) 539
Asp718I GGTACC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 812
AsuHPI GGTGA 3 cut(s) 157, 259, 937
AvaII GGWCC 1 cut(s) 812
BaeGI GKGCMC 1 cut(s) 602
BanI GGYRCC 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 629
Bbv12I GWGCWC 1 cut(s) 602
BbvCI CCTCAGC 1 cut(s) 56
BbvI GCAGC 4 cut(s) 462, 484, 499, 739
BccI CCATC 1 cut(s) 790
BceAI ACGGC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 810
BfaI CTAG 1 cut(s) 705
BfmI CTRYAG 1 cut(s) 300
BglII AGATCT 2 cut(s) 824, 886
BisI GCNGC 5 cut(s) 473, 476, 513, 753, 834
BlsI GCNGC 5 cut(s) 474, 477, 514, 754, 835
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 1 cut(s) 810
Bme18I GGWCC 1 cut(s) 812
BmgT120I GGNCC 1 cut(s) 812
BmiI GGNNCC 4 cut(s) 86, 214, 456, 507
BmrFI CCNGG 1 cut(s) 810
BmsI GCATC 1 cut(s) 69
BpiI GAAGAC 1 cut(s) 629
BpmI CTGGAG 1 cut(s) 792
Bpu10I CCTNAGC 2 cut(s) 50, 56
BpuEI CTTGAG 4 cut(s) 355, 405, 732, 813
BsaBI GATNNNNATC 1 cut(s) 885
BsaJI CCNNGG 3 cut(s) 187, 256, 951
BsaXI ACNNNNNCTCC 4 cut(s) 100, 130, 932, 962
Bsc4I CCNNNNNNNGG 1 cut(s) 809
Bse1I ACTGG 3 cut(s) 133, 662, 815
Bse8I GATNNNNATC 1 cut(s) 885
BseBI CCWGG 1 cut(s) 810
BseDI CCNNGG 3 cut(s) 187, 256, 951
BseGI GGATG 1 cut(s) 389
BseJI GATNNNNATC 1 cut(s) 885
BseLI CCNNNNNNNGG 1 cut(s) 809
BseMII CTCAG 3 cut(s) 70, 579, 866
BseNI ACTGG 3 cut(s) 133, 662, 815
BseRI GAGGAG 5 cut(s) 140, 143, 408, 657, 795
BseSI GKGCMC 1 cut(s) 602
BseXI GCAGC 4 cut(s) 462, 484, 499, 739
BseYI CCCAGC 2 cut(s) 224, 478
BsgI GTGCAG 1 cut(s) 614
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 602
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 1 cut(s) 809
BsmFI GGGAC 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 602
Bsp1407I TGTACA 1 cut(s) 582
Bsp143I GATC 3 cut(s) 824, 880, 886
Bsp19I CCATGG 1 cut(s) 951
BspACI CCGC 2 cut(s) 463, 833
BspCNI CTCAG 3 cut(s) 69, 578, 865
BspLI GGNNCC 4 cut(s) 86, 214, 456, 507
BspPI GGATC 1 cut(s) 888
BspT107I GGYRCC 1 cut(s) 84
BsrGI TGTACA 1 cut(s) 582
BsrI ACTGG 3 cut(s) 133, 662, 815
BssECI CCNNGG 3 cut(s) 187, 256, 951
BssMI GATC 3 cut(s) 824, 880, 886
BssT1I CCWWGG 1 cut(s) 951
Bst2UI CCWGG 1 cut(s) 810
Bst4CI ACNGT 4 cut(s) 89, 208, 235, 242
BstAUI TGTACA 1 cut(s) 582
BstDEI CTNAG 5 cut(s) 50, 56, 565, 852, 859
BstDSI CCRYGG 2 cut(s) 256, 951
BstENI CCTNNNNNAGG 1 cut(s) 807
BstF5I GGATG 1 cut(s) 389
BstKTI GATC 3 cut(s) 827, 883, 889
BstMBI GATC 3 cut(s) 824, 880, 886
BstMWI GCNNNNNNNGC 3 cut(s) 375, 518, 752
BstNI CCWGG 1 cut(s) 810
BstNSI RCATGY 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 808
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 602
BstV1I GCAGC 4 cut(s) 462, 484, 499, 739
BstV2I GAAGAC 1 cut(s) 629
BstX2I RGATCY 2 cut(s) 824, 886
BstYI RGATCY 2 cut(s) 824, 886
BtgI CCRYGG 2 cut(s) 256, 951
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 389
BtsI GCAGTG 2 cut(s) 602, 785
BtsIMutI CAGTG 2 cut(s) 602, 785
CaiI CAGNNNCTG 1 cut(s) 478
Cfr13I GGNCC 1 cut(s) 812
CseI GACGC 1 cut(s) 919
Csp6I GTAC 5 cut(s) 85, 325, 358, 583, 846
CviAII CATG 6 cut(s) 370, 469, 674, 722, 837, 952
CviQI GTAC 5 cut(s) 85, 325, 358, 583, 846
DdeI CTNAG 5 cut(s) 50, 56, 565, 852, 859
DpnI GATC 3 cut(s) 826, 882, 888
DpnII GATC 3 cut(s) 824, 880, 886
Eco130I CCWWGG 1 cut(s) 951
Eco32I GATATC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 812
Eco57I CTGAAG 2 cut(s) 90, 510
EcoNI CCTNNNNNAGG 1 cut(s) 807
EcoRII CCWGG 1 cut(s) 808
EcoRV GATATC 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 951
ErhI CCWWGG 1 cut(s) 951
FaeI CATG 6 cut(s) 373, 472, 677, 725, 840, 955
FaqI GGGAC 1 cut(s) 495
FatI CATG 6 cut(s) 369, 468, 673, 721, 836, 951
FblI GTMKAC 2 cut(s) 237, 296
Fnu4HI GCNGC 5 cut(s) 473, 476, 513, 753, 834
FokI GGATG 1 cut(s) 376
Fsp4HI GCNGC 5 cut(s) 473, 476, 513, 753, 834
FspBI CTAG 1 cut(s) 705
GluI GCNGC 5 cut(s) 473, 476, 513, 753, 834
GsaI CCCAGC 2 cut(s) 228, 482
GsuI CTGGAG 1 cut(s) 792
HgaI GACGC 1 cut(s) 919
Hin1II CATG 6 cut(s) 373, 472, 677, 725, 840, 955
HinfI GANTC 3 cut(s) 192, 315, 865
HphI GGTGA 3 cut(s) 157, 259, 937
Hpy166II GTNNAC 6 cut(s) 238, 297, 559, 585, 600, 629
Hpy188I TCNGA 4 cut(s) 120, 191, 568, 855
Hpy188III TCNNGA 4 cut(s) 284, 878, 884, 902
Hpy8I GTNNAC 6 cut(s) 238, 297, 559, 585, 600, 629
HpyAV CCTTC 3 cut(s) 305, 439, 534
HpyCH4III ACNGT 4 cut(s) 89, 208, 235, 242
HpyCH4IV ACGT 1 cut(s) 631
HpyCH4V TGCA 5 cut(s) 369, 472, 521, 595, 600
HpyF10VI GCNNNNNNNGC 3 cut(s) 375, 518, 752
HpyF3I CTNAG 5 cut(s) 50, 56, 565, 852, 859
HpySE526I ACGT 1 cut(s) 631
Hsp92II CATG 6 cut(s) 373, 472, 677, 725, 840, 955
KpnI GGTACC 1 cut(s) 88
Kzo9I GATC 3 cut(s) 824, 880, 886
LmnI GCTCC 3 cut(s) 218, 454, 644
Lsp1109I GCAGC 4 cut(s) 462, 484, 499, 739
LweI GCATC 1 cut(s) 69
MaeI CTAG 1 cut(s) 705
MaeII ACGT 1 cut(s) 631
MaeIII GTNAC 3 cut(s) 265, 372, 817
MalI GATC 3 cut(s) 826, 882, 888
MboI GATC 3 cut(s) 824, 880, 886
MboII GAAGA 4 cut(s) 424, 629, 650, 785
MflI RGATCY 2 cut(s) 824, 886
MhlI GDGCHC 1 cut(s) 602
MluCI AATT 2 cut(s) 250, 539
MlyI GAGTC 1 cut(s) 324
MmeI TCCRAC 1 cut(s) 195
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 2 cut(s) 590, 950
MspA1I CMGCKG 2 cut(s) 475, 577
MspR9I CCNGG 1 cut(s) 810
MvaI CCWGG 1 cut(s) 810
MwoI GCNNNNNNNGC 3 cut(s) 375, 518, 752
NcoI CCATGG 1 cut(s) 951
NdeII GATC 3 cut(s) 824, 880, 886
NlaIII CATG 6 cut(s) 373, 472, 677, 725, 840, 955
NlaIV GGNNCC 4 cut(s) 86, 214, 456, 507
NmeAIII GCCGAG 1 cut(s) 903
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 373
OliI CACNNNNGTG 1 cut(s) 590
PcsI WCGNNNNNNNCGW 1 cut(s) 637
PfeI GAWTC 2 cut(s) 192, 865
PkrI GCNGC 5 cut(s) 474, 477, 514, 754, 835
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
Psp1406I AACGTT 1 cut(s) 631
Psp6I CCWGG 1 cut(s) 808
PspFI CCCAGC 2 cut(s) 224, 478
PspGI CCWGG 1 cut(s) 808
PspN4I GGNNCC 4 cut(s) 86, 214, 456, 507
PspPI GGNCC 1 cut(s) 812
PsrI GAACNNNNNNTAC 2 cut(s) 113, 145
PstNI CAGNNNCTG 1 cut(s) 478
PsuI RGATCY 2 cut(s) 824, 886
PvuII CAGCTG 2 cut(s) 475, 577
RsaI GTAC 5 cut(s) 86, 326, 359, 584, 847
RsaNI GTAC 5 cut(s) 85, 325, 358, 583, 846
RseI CAYNNNNRTG 2 cut(s) 590, 950
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 5 cut(s) 473, 476, 513, 753, 834
Sau3AI GATC 3 cut(s) 824, 880, 886
Sau96I GGNCC 1 cut(s) 812
ScaI AGTACT 1 cut(s) 326
SchI GAGTC 1 cut(s) 324
ScrFI CCNGG 1 cut(s) 810
SduI GDGCHC 1 cut(s) 602
SfaNI GCATC 1 cut(s) 69
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 1 cut(s) 812
SmiMI CAYNNNNRTG 2 cut(s) 590, 950
SmlI CTYRAG 4 cut(s) 334, 420, 747, 828
SmoI CTYRAG 4 cut(s) 334, 420, 747, 828
Sse9I AATT 2 cut(s) 250, 539
SsiI CCGC 2 cut(s) 463, 833
SspI AATATT 1 cut(s) 715
SspMI CTAG 1 cut(s) 705
StyD4I CCNGG 1 cut(s) 808
StyI CCWWGG 1 cut(s) 951
TaaI ACNGT 4 cut(s) 89, 208, 235, 242
TaiI ACGT 1 cut(s) 634
TaqI TCGA 4 cut(s) 63, 614, 640, 718
TasI AATT 2 cut(s) 250, 539
TatI WGTACW 3 cut(s) 324, 582, 845
TauI GCSGC 1 cut(s) 836
TfiI GAWTC 2 cut(s) 192, 865
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 2 cut(s) 602, 792
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 4 cut(s) 472, 475, 512, 752
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 5 cut(s) 234, 457, 506, 738, 905
TspGWI ACGGA 1 cut(s) 467
TspRI CASTG 2 cut(s) 602, 792
VneI GTGCAC 1 cut(s) 598
VpaK11BI GGWCC 1 cut(s) 812
XagI CCTNNNNNAGG 1 cut(s) 807
XapI RAATTY 1 cut(s) 539
XceI RCATGY 1 cut(s) 373
XmiI GTMKAC 2 cut(s) 237, 296
XspI CTAG 1 cut(s) 705
ZrmI AGTACT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.