Rh5CG041400

Cysteine-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000283
Physical Location & Seq
Forward (+)
2817948 .. 2818990
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG041400.1

Sequence Viewer

Length: 582 bp
ATGGTAACAGGAACTAAGGGAGTAATCATCGTGGATGAGAAACAGATCAACATAATGCCTTGTTCTCATGTGCTCATGTCCTTTGTGCTGCTCTCCGTTCTTGGTTTCCATAGCCTCAGCGTCGAAGCTGAAGTTCCTGACATGTCCCATTTCTGTTCAAACACAACAACTTTCACTCCCAACAGCACCTACGAGTCCAATCTCAATCTCCTCCTCTCCTATCTCACCTCCAACGCCACCAATGACCTCGGATTCCACAACACCACAGTCGGCTCCCAAGACCCCGGCACGACTGTTTACGGTTCATTTAATTGCCTTGGTGATGTCACCCCTGAAAAATGTCAAGAATGTGTGTCTACTATAGCCAGAGGAGGAGTCCAAAAGTATTGCCCCCTGAGCAAAATCTCATTAATATGGTATGGAGATTGCATGTTACGCTACTCAAACACATCCTTCTTTGGCAACTCGGAGACATCTCCTCGACTTTACGCTTACAACACGGGGAATATCACTGAGCCTGACCGCGCGCTTCATGCCGCTGCTGGGACAAACTCTGAAGAGCTTGGTGGGACCTGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

193

Amino Acids

20.87

Weight (kDa)

4.92

Isoelectric Point (pI)

31.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 52 - 149 3.6e-24 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 356
AccII CGCG 2 cut(s) 525, 527
AciI CCGC 2 cut(s) 523, 537
AcuI CTGAAG 2 cut(s) 150, 576
AfiI CCNNNNNNNGG 1 cut(s) 543
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 1 cut(s) 159
AluBI AGCT 2 cut(s) 128, 562
AluI AGCT 2 cut(s) 128, 562
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 464
ApeKI GCWGC 3 cut(s) 88, 539, 576
AseI ATTAAT 1 cut(s) 410
AspLEI GCGC 2 cut(s) 527, 529
AspS9I GGNCC 1 cut(s) 570
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 3 cut(s) 217, 319, 332
AvaII GGWCC 1 cut(s) 570
Bbv12I GWGCWC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 116
BbvI GCAGC 3 cut(s) 75, 526, 563
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 464
BfaI CTAG 1 cut(s) 580
BfmI CTRYAG 1 cut(s) 360
BisI GCNGC 4 cut(s) 89, 537, 540, 577
BlsI GCNGC 4 cut(s) 90, 538, 541, 578
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 570
BmgT120I GGNCC 1 cut(s) 570
BmiI GGNNCC 2 cut(s) 274, 571
BmrFI CCNGG 1 cut(s) 285
Bpu10I CCTNAGC 2 cut(s) 116, 395
BpuMI CCSGG 1 cut(s) 285
BsaJI CCNNGG 3 cut(s) 247, 283, 316
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 543
BseDI CCNNGG 3 cut(s) 247, 283, 316
BseGI GGATG 2 cut(s) 40, 449
BseLI CCNNNNNNNGG 1 cut(s) 543
BseMII CTCAG 3 cut(s) 130, 386, 504
BsePI GCGCGC 1 cut(s) 525
BseRI GAGGAG 5 cut(s) 200, 203, 384, 387, 468
BseXI GCAGC 3 cut(s) 75, 526, 563
BseYI CCCAGC 1 cut(s) 542
Bsh1236I CGCG 2 cut(s) 525, 527
BsiHKAI GWGCWC 1 cut(s) 75
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 2 cut(s) 130, 559
BslI CCNNNNNNNGG 1 cut(s) 543
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 2 cut(s) 130, 559
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 2 cut(s) 523, 537
BspCNI CTCAG 3 cut(s) 129, 387, 505
BspFNI CGCG 2 cut(s) 525, 527
BspLI GGNNCC 2 cut(s) 274, 571
BspQI GCTCTTC 1 cut(s) 552
BssECI CCNNGG 3 cut(s) 247, 283, 316
BssHII GCGCGC 1 cut(s) 525
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 316
Bst4CI ACNGT 3 cut(s) 268, 295, 302
Bst6I CTCTTC 1 cut(s) 552
BstC8I GCNNGC 1 cut(s) 527
BstDEI CTNAG 4 cut(s) 15, 116, 395, 513
BstF5I GGATG 2 cut(s) 40, 449
BstFNI CGCG 2 cut(s) 525, 527
BstHHI GCGC 2 cut(s) 527, 529
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 3 cut(s) 396, 435, 533
BstNSI RCATGY 2 cut(s) 145, 433
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 360
BstUI CGCG 2 cut(s) 525, 527
BstV1I GCAGC 3 cut(s) 75, 526, 563
BtsCI GGATG 2 cut(s) 40, 449
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 1 cut(s) 527
CfoI GCGC 2 cut(s) 527, 529
Cfr13I GGNCC 1 cut(s) 570
CseI GACGC 1 cut(s) 109
CviAII CATG 5 cut(s) 68, 76, 142, 430, 533
CviJI RGCY 6 cut(s) 114, 128, 273, 365, 517, 562
CviKI_1 RGCY 6 cut(s) 114, 128, 273, 365, 517, 562
DdeI CTNAG 4 cut(s) 15, 116, 395, 513
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Eco130I CCWWGG 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 570
Eco57I CTGAAG 2 cut(s) 150, 576
EcoO109I RGGNCCY 1 cut(s) 570
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 5 cut(s) 71, 79, 145, 433, 536
FaqI GGGAC 2 cut(s) 130, 559
FatI CATG 5 cut(s) 67, 75, 141, 429, 532
FblI GTMKAC 1 cut(s) 356
Fnu4HI GCNGC 4 cut(s) 89, 537, 540, 577
FokI GGATG 2 cut(s) 47, 436
Fsp4HI GCNGC 4 cut(s) 89, 537, 540, 577
FspBI CTAG 1 cut(s) 580
GlaI GCGC 2 cut(s) 526, 528
GluI GCNGC 4 cut(s) 89, 537, 540, 577
GsaI CCCAGC 1 cut(s) 546
HapII CCGG 1 cut(s) 285
HgaI GACGC 1 cut(s) 109
HhaI GCGC 2 cut(s) 527, 529
Hin1II CATG 5 cut(s) 71, 79, 145, 433, 536
Hin6I GCGC 2 cut(s) 525, 527
HinP1I GCGC 2 cut(s) 525, 527
HinfI GANTC 3 cut(s) 194, 252, 375
HpaII CCGG 1 cut(s) 285
HphI GGTGA 3 cut(s) 217, 319, 332
Hpy166II GTNNAC 2 cut(s) 298, 357
Hpy188I TCNGA 3 cut(s) 251, 469, 556
Hpy188III TCNNGA 2 cut(s) 137, 344
Hpy8I GTNNAC 2 cut(s) 298, 357
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 3 cut(s) 268, 295, 302
HpyCH4V TGCA 1 cut(s) 429
HpyF10VI GCNNNNNNNGC 3 cut(s) 396, 435, 533
HpyF3I CTNAG 4 cut(s) 15, 116, 395, 513
Hsp92II CATG 5 cut(s) 71, 79, 145, 433, 536
HspAI GCGC 2 cut(s) 525, 527
Kzo9I GATC 1 cut(s) 45
LguI GCTCTTC 1 cut(s) 552
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 7 cut(s) 150, 298, 345, 379, 407, 528, 531
Lsp1109I GCAGC 3 cut(s) 75, 526, 563
MaeI CTAG 1 cut(s) 580
MaeIII GTNAC 3 cut(s) 4, 325, 432
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 1 cut(s) 569
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 1 cut(s) 310
MlyI GAGTC 2 cut(s) 203, 384
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 8 cut(s) 125, 221, 224, 238, 257, 362, 365, 489
MseI TTAA 2 cut(s) 309, 410
MslI CAYNNNNRTG 1 cut(s) 412
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 285
MvnI CGCG 2 cut(s) 525, 527
MwoI GCNNNNNNNGC 3 cut(s) 396, 435, 533
NciI CCSGG 1 cut(s) 285
NdeII GATC 1 cut(s) 45
NlaIII CATG 5 cut(s) 71, 79, 145, 433, 536
NlaIV GGNNCC 2 cut(s) 274, 571
NmuCI GTSAC 1 cut(s) 325
NspI RCATGY 2 cut(s) 145, 433
PauI GCGCGC 1 cut(s) 525
PciI ACATGT 1 cut(s) 141
PciSI GCTCTTC 1 cut(s) 552
PfeI GAWTC 1 cut(s) 252
PkrI GCNGC 4 cut(s) 90, 538, 541, 578
PleI GAGTC 2 cut(s) 202, 383
PpsI GAGTC 2 cut(s) 202, 383
PpuMI RGGWCCY 1 cut(s) 570
PscI ACATGT 1 cut(s) 141
PshBI ATTAAT 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 570
PspFI CCCAGC 1 cut(s) 542
PspN4I GGNNCC 2 cut(s) 274, 571
PspPI GGNCC 1 cut(s) 570
PspPPI RGGWCCY 1 cut(s) 570
PteI GCGCGC 1 cut(s) 525
RseI CAYNNNNRTG 1 cut(s) 412
SapI GCTCTTC 1 cut(s) 552
SaqAI TTAA 2 cut(s) 309, 410
SatI GCNGC 4 cut(s) 89, 537, 540, 577
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 1 cut(s) 570
SchI GAGTC 2 cut(s) 203, 384
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 1 cut(s) 75
SetI ASST 6 cut(s) 130, 191, 230, 249, 564, 575
SfcI CTRYAG 1 cut(s) 360
SinI GGWCC 1 cut(s) 570
SmiMI CAYNNNNRTG 1 cut(s) 412
Sse9I AATT 1 cut(s) 310
SsiI CCGC 2 cut(s) 523, 537
SspMI CTAG 1 cut(s) 580
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 3 cut(s) 268, 295, 302
TaqI TCGA 2 cut(s) 123, 481
TasI AATT 1 cut(s) 310
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 2 cut(s) 309, 410
Tru9I TTAA 2 cut(s) 309, 410
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 3 cut(s) 88, 539, 576
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 2 cut(s) 294, 521
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 1 cut(s) 517
VpaK11BI GGWCC 1 cut(s) 570
VspI ATTAAT 1 cut(s) 410
XceI RCATGY 2 cut(s) 145, 433
XmiI GTMKAC 1 cut(s) 356
XspI CTAG 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.