pycom15g28820

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
25108518 .. 25109331
814 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g28820.2

Sequence Viewer

Length: 684 bp
ATGAATAACATTACTACCCTTCTTTTGATTATTTCTGTTTTTACTCTGCCCAGCTTTCCGACCAGTACGGCAGCTGATTACCTGGCTCAACTCTGCCCAAACTCTACCTTCCAGTCCAACCTCAACCGCCTCCTCTCCACCTTCTCCTCCAACGCTAACCGCTCCATCGGTTTCGACAATGCCATAGTCCAAACCACAAACAACGCCGTCTACGGCCTTTTCCTCTGCCGTGGCGACATCGTAGTCACCGACGCTTGTGAAACCTGTGTCGCCACCGCAATCGCCGAGGCCCTCACAACGCCACTTCTTAGAAAAACAGGTGGTGATTTGGTACGACGACTATGGCTACCGAGGCTGCCAACGACGCAGACAAGTTCGCTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATCAGTGATCTGATTGAGCTGTACAGCCTTAAACAGTGCACACAGGACTTGTCCGCGACTACTTGCGACCGGTTCTTTAGGGTTGCCATAGCGGAATGGCAGATTTGTTGTAGCGAAAAGCTAACGGTACGACTTCTGCATCCGAGATGTAACGTTTGGTATGCAATCTACCCCTTCTACGCCCAGAACGCCACAGCCCCTGAGCCTGCACTAGTGGCTCATCCCCCTCCGCCTAAGGGTAAAGCGAACAAACATTTTAAAACTTTTTAG

Protein Analysis

228

Amino Acids

25.26

Weight (kDa)

9.49

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AccBSI CCGCTC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 210
AccII CGCG 1 cut(s) 470
AciI CCGC 6 cut(s) 127, 160, 276, 468, 506, 644
AclI AACGTT 1 cut(s) 567
AfaI GTAC 4 cut(s) 67, 333, 437, 543
AfiI CCNNNNNNNGG 1 cut(s) 650
AgeI ACCGGT 1 cut(s) 483
AhlI ACTAGT 1 cut(s) 625
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 4 cut(s) 54, 74, 433, 535
AluI AGCT 4 cut(s) 54, 74, 433, 535
Alw21I GWGCWC 1 cut(s) 455
Alw44I GTGCAC 1 cut(s) 451
AlwNI CAGNNNCTG 1 cut(s) 614
AoxI GGCC 2 cut(s) 214, 288
ApaLI GTGCAC 1 cut(s) 451
ApeKI GCWGC 2 cut(s) 71, 355
AsiGI ACCGGT 1 cut(s) 483
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 238, 335
AxyI CCTNAGG 1 cut(s) 648
BaeGI GKGCMC 1 cut(s) 455
Bbv12I GWGCWC 1 cut(s) 455
BbvI GCAGC 2 cut(s) 83, 342
BccI CCATC 1 cut(s) 173
BceAI ACGGC 4 cut(s) 84, 191, 213, 229
BciT130I CCWGG 1 cut(s) 83
BcuI ACTAGT 1 cut(s) 625
BfaI CTAG 1 cut(s) 626
BisI GCNGC 2 cut(s) 72, 356
BlsI GCNGC 2 cut(s) 73, 357
Bme1390I CCNGG 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 562
Bpu10I CCTNAGC 1 cut(s) 615
BsaJI CCNNGG 3 cut(s) 229, 285, 350
BsaWI WCCGGW 1 cut(s) 483
Bsc4I CCNNNNNNNGG 1 cut(s) 650
Bse118I RCCGGY 1 cut(s) 483
Bse1I ACTGG 2 cut(s) 63, 112
Bse21I CCTNAGG 1 cut(s) 648
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 3 cut(s) 229, 285, 350
BseGI GGATG 2 cut(s) 553, 634
BseLI CCNNNNNNNGG 1 cut(s) 650
BseMII CTCAG 1 cut(s) 606
BseNI ACTGG 2 cut(s) 63, 112
BseRI GAGGAG 2 cut(s) 122, 136
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 2 cut(s) 83, 342
BseYI CCCAGC 1 cut(s) 50
BsgI GTGCAG 1 cut(s) 606
Bsh1236I CGCG 1 cut(s) 470
Bsh1285I CGRYCG 1 cut(s) 484
BshFI GGCC 2 cut(s) 216, 290
BshTI ACCGGT 1 cut(s) 483
BsiEI CGRYCG 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 455
BsiSI CCGG 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 650
BsnI GGCC 2 cut(s) 216, 290
Bsp1286I GDGCHC 1 cut(s) 455
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 1 cut(s) 421
BspACI CCGC 6 cut(s) 127, 160, 276, 468, 506, 644
BspANI GGCC 2 cut(s) 216, 290
BspCNI CTCAG 1 cut(s) 607
BspFNI CGCG 1 cut(s) 470
BsrBI CCGCTC 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 483
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 2 cut(s) 63, 112
BssAI RCCGGY 1 cut(s) 483
BssECI CCNNGG 3 cut(s) 229, 285, 350
BssMI GATC 1 cut(s) 421
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 2 cut(s) 450, 541
BstAUI TGTACA 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 621
BstDEI CTNAG 3 cut(s) 308, 615, 648
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 2 cut(s) 553, 634
BstFNI CGCG 1 cut(s) 470
BstKTI GATC 1 cut(s) 424
BstMBI GATC 1 cut(s) 421
BstMCI CGRYCG 1 cut(s) 484
BstMWI GCNNNNNNNGC 4 cut(s) 352, 364, 602, 629
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 455
BstUI CGCG 1 cut(s) 470
BstV1I GCAGC 2 cut(s) 83, 342
Bsu36I CCTNAGG 1 cut(s) 648
BsuRI GGCC 2 cut(s) 216, 290
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 2 cut(s) 553, 634
BtsIMutI CAGTG 2 cut(s) 424, 455
Cac8I GCNNGC 1 cut(s) 621
CaiI CAGNNNCTG 1 cut(s) 614
Cfr10I RCCGGY 1 cut(s) 483
Cfr13I GGNCC 1 cut(s) 289
CseI GACGC 2 cut(s) 260, 373
Csp6I GTAC 4 cut(s) 66, 332, 436, 542
CspAI ACCGGT 1 cut(s) 483
CviQI GTAC 4 cut(s) 66, 332, 436, 542
DdeI CTNAG 3 cut(s) 308, 615, 648
DpnI GATC 1 cut(s) 423
DpnII GATC 1 cut(s) 421
DraI TTTAAA 1 cut(s) 673
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EciI GGCGGA 1 cut(s) 633
Eco81I CCTNAGG 1 cut(s) 648
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 81
FaiI YATR 4 cut(s) 185, 343, 503, 576
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 72, 356
FokI GGATG 2 cut(s) 540, 621
Fsp4HI GCNGC 2 cut(s) 72, 356
FspBI CTAG 1 cut(s) 626
GluI GCNGC 2 cut(s) 72, 356
GsaI CCCAGC 1 cut(s) 54
HaeIII GGCC 2 cut(s) 216, 290
HapII CCGG 1 cut(s) 484
HgaI GACGC 2 cut(s) 260, 373
HpaII CCGG 1 cut(s) 484
HphI GGTGA 2 cut(s) 238, 335
Hpy166II GTNNAC 2 cut(s) 211, 453
Hpy188I TCNGA 3 cut(s) 60, 426, 558
Hpy8I GTNNAC 2 cut(s) 211, 453
Hpy99I CGWCG 3 cut(s) 254, 339, 367
HpyAV CCTTC 4 cut(s) 29, 118, 151, 598
HpyCH4III ACNGT 2 cut(s) 450, 541
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 4 cut(s) 453, 553, 578, 623
HpyF10VI GCNNNNNNNGC 4 cut(s) 352, 364, 602, 629
HpyF3I CTNAG 3 cut(s) 308, 615, 648
HpySE526I ACGT 1 cut(s) 567
Kzo9I GATC 1 cut(s) 421
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 2 cut(s) 83, 342
LweI GCATC 1 cut(s) 562
MaeI CTAG 1 cut(s) 626
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 2 cut(s) 244, 563
MalI GATC 1 cut(s) 423
MbiI CCGCTC 1 cut(s) 162
MboI GATC 1 cut(s) 421
MhlI GDGCHC 1 cut(s) 455
MmeI TCCRAC 3 cut(s) 83, 141, 174
MnlI CCTC 9 cut(s) 131, 140, 143, 157, 233, 280, 302, 345, 651
MseI TTAA 2 cut(s) 444, 672
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 484
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 470
MwoI GCNNNNNNNGC 4 cut(s) 352, 364, 602, 629
NdeII GATC 1 cut(s) 421
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PinAI ACCGGT 1 cut(s) 483
PkrI GCNGC 2 cut(s) 73, 357
Psp1406I AACGTT 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 1 cut(s) 81
PspPI GGNCC 1 cut(s) 289
PstNI CAGNNNCTG 1 cut(s) 614
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 4 cut(s) 67, 333, 437, 543
RsaNI GTAC 4 cut(s) 66, 332, 436, 542
SaqAI TTAA 2 cut(s) 444, 672
SatI GCNGC 2 cut(s) 72, 356
Sau3AI GATC 1 cut(s) 421
Sau96I GGNCC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 455
SfaNI GCATC 1 cut(s) 562
SpeI ACTAGT 1 cut(s) 625
SsiI CCGC 6 cut(s) 127, 160, 276, 468, 506, 644
SspMI CTAG 1 cut(s) 626
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 450, 541
TaiI ACGT 1 cut(s) 570
TaqI TCGA 1 cut(s) 174
TatI WGTACW 1 cut(s) 435
Tru1I TTAA 2 cut(s) 444, 672
Tru9I TTAA 2 cut(s) 444, 672
TscAI CASTG 2 cut(s) 424, 455
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 2 cut(s) 71, 355
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 424, 455
VneI GTGCAC 1 cut(s) 451
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.