pycom10g26570

Cysteine-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000283
Physical Location & Seq
Reverse (-)
27880559 .. 27881050
492 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g26570.1

Sequence Viewer

Length: 366 bp
ATGGTTTCGGAAAGGAACGCCGGCTTTCATCAAATAAAACGTGTTCCTAGCCTTGTAACATATGCATGGAAATTATGGCATGACAGAAAAGGGTTGGAGCTACTTGACCCACTGCTGCTCGATTCATGTGATCCAGATGAGTTTCTAAGATATCTCCATATCGGATTGTTGTGTGTCCAGGAAGATGCATATGACAGGCCAACCATGTCTTTTATTGTTGTAATGTTGAAAAGTGAAACGGCAACTCTTAACCAACCTAAAAAACCTGCTTTCACCACGGGAATATTCGCTGACCATTATATTGAAACAGATGCTAGTAGTAGCTCTGTTAATGGTCTAACAGTTTCTAACGTCATGCCACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3403 Pkinase_Tyr Stress-antifung

Protein Analysis

122

Amino Acids

13.71

Weight (kDa)

5.73

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3403 PF11883 78 - 121 1.5e-06 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 274
AclWI GGATC 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 40
AgsI TTSAA 2 cut(s) 229, 305
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 2 cut(s) 100, 324
AluI AGCT 2 cut(s) 100, 324
AlwI GGATC 1 cut(s) 125
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 265
BbvI GCAGC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 179
BfaI CTAG 2 cut(s) 48, 315
BfuAI ACCTGC 1 cut(s) 274
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 2 cut(s) 175, 301
BsaJI CCNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 20
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 102
BshFI GGCC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 21
BsnI GGCC 1 cut(s) 199
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 276
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 199
BtgI CCRYGG 1 cut(s) 276
BtsI GCAGTG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 110
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 20
CviAII CATG 5 cut(s) 66, 80, 126, 205, 355
CviJI RGCY 5 cut(s) 24, 51, 100, 199, 324
CviKI_1 RGCY 5 cut(s) 24, 51, 100, 199, 324
DdeI CTNAG 1 cut(s) 146
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eco32I GATATC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 177
EcoRV GATATC 1 cut(s) 152
EcoT22I ATGCAT 2 cut(s) 67, 190
FaeI CATG 5 cut(s) 69, 83, 129, 208, 358
FatI CATG 5 cut(s) 65, 79, 125, 204, 354
FauNDI CATATG 2 cut(s) 61, 190
Fnu4HI GCNGC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 2 cut(s) 48, 315
GluI GCNGC 1 cut(s) 116
HaeIII GGCC 1 cut(s) 199
HapII CCGG 1 cut(s) 21
Hin1II CATG 5 cut(s) 69, 83, 129, 208, 358
HinfI GANTC 1 cut(s) 122
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 265
Hpy188I TCNGA 2 cut(s) 10, 164
Hpy188III TCNNGA 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 2 cut(s) 40, 351
HpyCH4V TGCA 2 cut(s) 65, 188
HpyF3I CTNAG 1 cut(s) 146
HpySE526I ACGT 2 cut(s) 40, 351
Hsp92II CATG 5 cut(s) 69, 83, 129, 208, 358
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 6 cut(s) 34, 147, 164, 181, 191, 279
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 2 cut(s) 175, 301
MaeI CTAG 2 cut(s) 48, 315
MaeII ACGT 2 cut(s) 40, 351
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 194
MluCI AATT 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 75
Mph1103I ATGCAT 2 cut(s) 67, 190
MroNI GCCGGC 1 cut(s) 20
MseI TTAA 2 cut(s) 249, 330
MslI CAYNNNNRTG 1 cut(s) 64
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
NaeI GCCGGC 1 cut(s) 22
NdeI CATATG 2 cut(s) 61, 190
NdeII GATC 1 cut(s) 130
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 5 cut(s) 69, 83, 129, 208, 358
NsiI ATGCAT 2 cut(s) 67, 190
PdiI GCCGGC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 122
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 64
SaqAI TTAA 2 cut(s) 249, 330
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 179
SetI ASST 6 cut(s) 43, 102, 259, 268, 326, 354
SfaNI GCATC 2 cut(s) 175, 301
SmiMI CAYNNNNRTG 1 cut(s) 64
Sse9I AATT 1 cut(s) 71
SspI AATATT 1 cut(s) 285
SspMI CTAG 2 cut(s) 48, 315
StyD4I CCNGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 2 cut(s) 43, 354
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 71
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 2 cut(s) 249, 330
Tru9I TTAA 2 cut(s) 249, 330
TscAI CASTG 1 cut(s) 117
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 17, 114
TspRI CASTG 1 cut(s) 117
XspI CTAG 2 cut(s) 48, 315
Zsp2I ATGCAT 2 cut(s) 67, 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.