Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000283

Physical Location & Seq

Genomic Coordinates Forward (+)

2797996 .. 2798328

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG041200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCAGGCTTGGAAACTATGGAGAGATGGAACTCCTTTGGAATTTTTGGATCCGTGTCTGAGAGATTCTTATTCTAGAAATGAAGTTATCAGATGTATCCACATTGGCTTACTTTGTGTTCAGGAGGATCCGGCTGACAGACCTACAATGCAATCACTAGTTCTTATGCTCAACAGCTACTCTGTTAGTCTACCATTACCTCAAGAGCCAGCATTTGTCCATAGGACTAGATCGGAGTTCATGCCAAAGATACCGCTGGAGTATGATCAGTCTATCAGCAAGTCAAGTCCATCGGTTTATGAAGGATCAATCACTGAAGTATATCCTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

110

Amino Acids

12.7

Weight (kDa)

5.29

Isoelectric Point (pI)

63.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca	FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica	MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica	Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis	pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis	RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata	RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora	Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa	Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha	Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana	Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	190
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	5 cut(s)	44, 57, 122, 135, 313
AcsI	RAATTY	1 cut(s)	41
AhlI	ACTAGT	1 cut(s)	157
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
AlwI	GGATC	5 cut(s)	44, 57, 122, 135, 313
ApoI	RAATTY	1 cut(s)	41
BamHI	GGATCC	2 cut(s)	49, 127
BccI	CCATC	2 cut(s)	20, 298
BciVI	GTATCC	1 cut(s)	107
BclI	TGATCA	1 cut(s)	265
BcuI	ACTAGT	1 cut(s)	157
BfaI	CTAG	3 cut(s)	75, 158, 228
BfuI	GTATCC	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	51, 129
BpmI	CTGGAG	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	131
Bsp143I	GATC	5 cut(s)	49, 127, 230, 265, 305
BspACI	CCGC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	51, 129
BspPI	GGATC	5 cut(s)	44, 57, 122, 135, 313
BssMI	GATC	5 cut(s)	49, 127, 230, 265, 305
BstC8I	GCNNGC	2 cut(s)	6, 210
BstDEI	CTNAG	1 cut(s)	59
BstKTI	GATC	5 cut(s)	52, 130, 233, 268, 308
BstMBI	GATC	5 cut(s)	49, 127, 230, 265, 305
BstX2I	RGATCY	2 cut(s)	49, 127
BstYI	RGATCY	2 cut(s)	49, 127
BsuI	GTATCC	1 cut(s)	107
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	2 cut(s)	6, 210
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	5 cut(s)	8, 108, 134, 177, 208
CviKI_1	RGCY	5 cut(s)	8, 108, 134, 177, 208
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	5 cut(s)	51, 129, 232, 267, 307
DpnII	GATC	5 cut(s)	49, 127, 230, 265, 305
FaeI	CATG	1 cut(s)	244
FaiI	YATR	7 cut(s)	19, 167, 222, 242, 264, 300, 322
FatI	CATG	1 cut(s)	240
FbaI	TGATCA	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	190
FspBI	CTAG	3 cut(s)	75, 158, 228
GsuI	CTGGAG	1 cut(s)	278
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	1 cut(s)	244
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	3 cut(s)	60, 92, 235
Hpy188III	TCNNGA	3 cut(s)	75, 122, 203
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	296
HpyCH4V	TGCA	2 cut(s)	4, 151
HpyF3I	CTNAG	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	5 cut(s)	49, 127, 230, 265, 305
LpnPI	CCDG	4 cut(s)	107, 144, 222, 242
MaeI	CTAG	3 cut(s)	75, 158, 228
MalI	GATC	5 cut(s)	51, 129, 232, 267, 307
MboI	GATC	5 cut(s)	49, 127, 230, 265, 305
MflI	RGATCY	2 cut(s)	49, 127
MluCI	AATT	1 cut(s)	41
MnlI	CCTC	2 cut(s)	118, 210
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	1 cut(s)	131
NdeII	GATC	5 cut(s)	49, 127, 230, 265, 305
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	2 cut(s)	51, 129
PfeI	GAWTC	1 cut(s)	65
PspN4I	GGNNCC	2 cut(s)	51, 129
PsuI	RGATCY	2 cut(s)	49, 127
Sau3AI	GATC	5 cut(s)	49, 127, 230, 265, 305
SetI	ASST	3 cut(s)	145, 179, 202
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
SpeI	ACTAGT	1 cut(s)	157
Sse9I	AATT	1 cut(s)	41
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	3 cut(s)	75, 158, 228
TaqI	TCGA	1 cut(s)	328
TasI	AATT	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	65
TscAI	CASTG	1 cut(s)	319
TspDTI	ATGAA	3 cut(s)	96, 229, 315
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	319
XapI	RAATTY	1 cut(s)	41
XbaI	TCTAGA	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	190
XspI	CTAG	3 cut(s)	75, 158, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.