Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000283

Physical Location & Seq

Genomic Coordinates Forward (+)

2758018 .. 2758362

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG041000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCAGAAGTGATCCTTCTCTTCCTTTCAGTGGTCACCCTGCTAAGCTTTCCGACTACAAAAGCCGACTACGTCTACCATATCTGCCCCAACACCACCGTCTTCACTCCAAACTCCACCTTCCAGTCCAACCTCAACGACCTCCTCTCCAGTCTCTCCTCCAACGCCATACGCGACACCGGCTTCTACAACGCCACCTCCAGCCGTACCCCTAACGACACCGCCTACGGCCTCTTCCTCTGCCGCGGTGACGTCACCACAGCCGCTTGCAAGTCCTGCGTGTCCACCGCAACCTCCGAGGTCGTGCAGCGCTGCCCGGTCGAGAAAGAGGTTGTGAACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

114

Amino Acids

12.37

Weight (kDa)

5.12

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	29 - 111	2e-21	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca	FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica	MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica	Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis	pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis	RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata	RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora	Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa	Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha	Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana	Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	2 cut(s)	174, 246
AciI	CCGC	5 cut(s)	222, 244, 246, 264, 288
AclWI	GGATC	1 cut(s)	7
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	1 cut(s)	208
AfeI	AGCGCT	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	31
AluBI	AGCT	1 cut(s)	48
AluI	AGCT	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	7
Aor51HI	AGCGCT	1 cut(s)	311
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	307, 312
AspLEI	GCGC	1 cut(s)	312
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	3 cut(s)	28, 247, 260
BbsI	GAAGAC	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	299, 319
BceAI	ACGGC	2 cut(s)	189, 244
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	313
BisI	GCNGC	4 cut(s)	244, 264, 308, 313
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	4 cut(s)	245, 265, 309, 314
Bme1390I	CCNGG	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	94
BpmI	CTGGAG	2 cut(s)	133, 184
Bpu1102I	GCTNAGC	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	244, 297
BsaXI	ACNNNNNCTCC	4 cut(s)	131, 161, 182, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	124, 150
BseDI	CCNNGG	2 cut(s)	244, 297
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseNI	ACTGG	2 cut(s)	124, 150
BseRI	GAGGAG	2 cut(s)	134, 148
BseXI	GCAGC	2 cut(s)	299, 319
BsgI	GTGCAG	1 cut(s)	326
Bsh1236I	CGCG	2 cut(s)	174, 246
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	180, 317
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	12
Bsp1720I	GCTNAGC	1 cut(s)	44
BspACI	CCGC	5 cut(s)	222, 244, 246, 264, 288
BspANI	GGCC	1 cut(s)	231
BspFNI	CGCG	2 cut(s)	174, 246
BspPI	GGATC	1 cut(s)	7
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	124, 150
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	244, 297
BssMI	GATC	1 cut(s)	12
BssNI	GRCGYC	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	2 cut(s)	26, 239
BstACI	GRCGYC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	44
BstDSI	CCRYGG	1 cut(s)	244
BstEII	GGTNACC	1 cut(s)	34
BstFNI	CGCG	2 cut(s)	174, 246
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	12
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 276
BstPI	GGTNACC	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	315
BstUI	CGCG	2 cut(s)	174, 246
BstV1I	GCAGC	2 cut(s)	299, 319
BstV2I	GAAGAC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	268
CfoI	GCGC	1 cut(s)	312
Cfr10I	RCCGGY	1 cut(s)	179
Cfr42I	CCGCGG	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	207
CviJI	RGCY	6 cut(s)	48, 65, 183, 204, 231, 263
CviKI_1	RGCY	6 cut(s)	48, 65, 183, 204, 231, 263
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	26, 239
EarI	CTCTTC	2 cut(s)	26, 239
Eco47III	AGCGCT	1 cut(s)	311
Eco91I	GGTNACC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	34
FaiI	YATR	2 cut(s)	81, 170
FalI	AAGNNNNNCTT	1 cut(s)	32
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	4 cut(s)	244, 264, 308, 313
Fsp4HI	GCNGC	4 cut(s)	244, 264, 308, 313
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	4 cut(s)	244, 264, 308, 313
GsuI	CTGGAG	2 cut(s)	133, 184
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	180, 317
HhaI	GCGC	1 cut(s)	312
Hin1I	GRCGYC	1 cut(s)	252
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	46
HpaII	CCGG	2 cut(s)	180, 317
HphI	GGTGA	3 cut(s)	28, 247, 260
Hpy166II	GTNNAC	3 cut(s)	76, 285, 337
Hpy188I	TCNGA	2 cut(s)	54, 298
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	3 cut(s)	76, 285, 337
HpyAV	CCTTC	2 cut(s)	26, 130
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	2 cut(s)	72, 252
HpyCH4V	TGCA	2 cut(s)	270, 307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 276
HpyF3I	CTNAG	1 cut(s)	44
HpySE526I	ACGT	2 cut(s)	72, 252
Hsp92I	GRCGYC	1 cut(s)	252
HspAI	GCGC	1 cut(s)	310
KspI	CCGCGG	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	7 cut(s)	53, 137, 163, 193, 214, 289, 330
Lsp1109I	GCAGC	2 cut(s)	299, 319
MaeII	ACGT	2 cut(s)	72, 252
MaeIII	GTNAC	3 cut(s)	34, 248, 253
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	3 cut(s)	13, 94, 226
MmeI	TCCRAC	3 cut(s)	77, 153, 186
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	2 cut(s)	180, 317
MspR9I	CCNGG	1 cut(s)	317
MvnI	CGCG	2 cut(s)	174, 246
MwoI	GCNNNNNNNGC	2 cut(s)	180, 276
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	1 cut(s)	12
NmuCI	GTSAC	3 cut(s)	34, 248, 253
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	4 cut(s)	245, 265, 309, 314
PspEI	GGTNACC	1 cut(s)	34
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SacII	CCGCGG	1 cut(s)	247
SatI	GCNGC	4 cut(s)	244, 264, 308, 313
Sau3AI	GATC	1 cut(s)	12
ScrFI	CCNGG	1 cut(s)	317
Sfr303I	CCGCGG	1 cut(s)	247
SgrBI	CCGCGG	1 cut(s)	247
SsiI	CCGC	5 cut(s)	222, 244, 246, 264, 288
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	2 cut(s)	75, 255
TaqI	TCGA	1 cut(s)	321
TauI	GCSGC	2 cut(s)	246, 266
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	3 cut(s)	34, 248, 253
TseI	GCWGC	2 cut(s)	307, 312
Tsp45I	GTSAC	3 cut(s)	34, 248, 253
TspRI	CASTG	1 cut(s)	36
Tth111I	GACNNNGTC	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	75
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.