Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000283

Physical Location & Seq

Genomic Coordinates Reverse (-)

27791648 .. 27792782

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g26460.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGTATTGGTAGCCAAGCTTCAACACCGAAATTTGGTTAGGCTGTTGGGATTTTGCTTGGAAGGCGAAGAAAAGATTCTTGTTTATGAATATGTGCTCAACAAAAGCCTCGACTGTTACCTATTTGACCCTGAGAAACAGGGGCAATTGGATTGGTCAAGACGTTACAAGATTATTTCAGGAATTGCTCGAGGAATCATGTACCTACATGAAGATTCTCGACTTAGAATTATACATCGTGATCTCAAAGCCAGTAATATATTGTTAGATGGGGAGATGCATCAAAAAATATCTGATTTTGGCATGGCCAGGATATTTGGGGTTGACCAAACTCAAGCAAGCACAAATAGAATTGTCGGAACATATGGTTATATGTCTCCTGAGTATGCAATGCATGGACATTTTTCTATCAAGTCCGATCTGTATAGTTTCGGTGTTTTAGTTCTAGAAATCATCAGTGGCAAGAAGAACAGTTACTTCTTTCAGACTGATGCAGCTGAGGACCTCATGAGCCATGCTTGGAAGTTATGGAGAGATGGGGCACCTTTGGAATTGTTGGATCCGTGTCTGAGGGACTCTTATTCGAGGACTGAAGTAATTAGATGCATCCACATCGGCTTACTTTGTGTTCAGGAAGATCCAGCTGATAGGCCGACAATGCAATCGATAGTACTTATGCTCAATAGCTACTCTATTACTTTGCCATTACCTCAACGACCGGCCTTTTTCCTCCAAAGTAGAGCAATGGGAAATATGTTAGAGGCAACGCTGGACTCTTCTCAATCTATCAGCAAGTCATCTCCGTCCGTTTATGAAGGATCTATCACTGAAGTATACCCTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

282

Amino Acids

32.09

Weight (kDa)

6.25

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca	FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica	MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica	Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis	pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis	RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata	RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora	Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa	Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha	Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana	Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	541
AccI	GTMKAC	1 cut(s)	834
AclWI	GGATC	4 cut(s)	554, 567, 632, 826
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	2 cut(s)	203, 672
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	4 cut(s)	19, 497, 644, 687
AluI	AGCT	4 cut(s)	19, 497, 644, 687
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	4 cut(s)	554, 567, 632, 826
Ama87I	CYCGRG	1 cut(s)	189
AoxI	GGCC	3 cut(s)	306, 650, 720
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	502
AvaI	CYCGRG	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	502
BaeGI	GKGCMC	1 cut(s)	544
BalI	TGGCCA	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	559
BanI	GGYRCC	1 cut(s)	541
BarI	GAAGNNNNNNTAC	3 cut(s)	35, 458, 490
Bbv12I	GWGCWC	1 cut(s)	99
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	1 cut(s)	506
BccI	CCATC	2 cut(s)	263, 530
BcgI	CGANNNNNNTGC	2 cut(s)	595, 629
BciT130I	CCWGG	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	2 cut(s)	446, 840
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
BmcAI	AGTACT	1 cut(s)	672
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	502
BmeT110I	CYCGRG	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	2 cut(s)	543, 561
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	5 cut(s)	267, 289, 481, 593, 615
Bpu10I	CCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	318
Bsa29I	ATCGAT	1 cut(s)	665
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	718
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	2 cut(s)	396, 750
BseBI	CCWGG	1 cut(s)	310
BseCI	ATCGAT	1 cut(s)	665
BseGI	GGATG	1 cut(s)	606
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	2 cut(s)	396, 750
BseMII	CTCAG	4 cut(s)	123, 372, 489, 560
BseNI	ACTGG	1 cut(s)	252
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	1 cut(s)	506
Bsh1285I	CGRYCG	1 cut(s)	719
BshFI	GGCC	3 cut(s)	308, 652, 722
BshNI	GGYRCC	1 cut(s)	541
BshVI	ATCGAT	1 cut(s)	665
BsiEI	CGRYCG	1 cut(s)	719
BsiHKAI	GWGCWC	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	719
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	587
BsnI	GGCC	3 cut(s)	308, 652, 722
BsoBI	CYCGRG	1 cut(s)	189
Bsp1286I	GDGCHC	2 cut(s)	99, 544
Bsp143I	GATC	5 cut(s)	241, 418, 559, 637, 818
BspANI	GGCC	3 cut(s)	308, 652, 722
BspCNI	CTCAG	4 cut(s)	124, 373, 490, 561
BspDI	ATCGAT	1 cut(s)	665
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	543, 561
BspPI	GGATC	4 cut(s)	554, 567, 632, 826
BspT107I	GGYRCC	1 cut(s)	541
BsrDI	GCAATG	2 cut(s)	396, 750
BsrFI	RCCGGY	1 cut(s)	718
BsrI	ACTGG	1 cut(s)	252
BssAI	RCCGGY	1 cut(s)	718
BssMI	GATC	5 cut(s)	241, 418, 559, 637, 818
BssNAI	GTATAC	1 cut(s)	835
Bst1107I	GTATAC	1 cut(s)	835
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	2 cut(s)	116, 473
Bst6I	CTCTTC	1 cut(s)	781
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	5 cut(s)	132, 224, 381, 498, 569
BstF5I	GGATG	1 cut(s)	606
BstKTI	GATC	5 cut(s)	244, 421, 562, 640, 821
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	5 cut(s)	241, 418, 559, 637, 818
BstMCI	CGRYCG	1 cut(s)	719
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 658
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	308
BstSLI	GKGCMC	1 cut(s)	544
BstV1I	GCAGC	1 cut(s)	506
BstX2I	RGATCY	3 cut(s)	559, 637, 818
BstYI	RGATCY	3 cut(s)	559, 637, 818
BstZ17I	GTATAC	1 cut(s)	835
Bsu15I	ATCGAT	1 cut(s)	665
BsuRI	GGCC	3 cut(s)	308, 652, 722
BsuTUI	ATCGAT	1 cut(s)	665
BtsCI	GGATG	1 cut(s)	606
BtsIMutI	CAGTG	2 cut(s)	463, 825
Cac8I	GCNNGC	1 cut(s)	340
CciI	TCATGA	1 cut(s)	507
Cfr10I	RCCGGY	1 cut(s)	718
Cfr13I	GGNCC	1 cut(s)	502
ClaI	ATCGAT	1 cut(s)	665
Csp6I	GTAC	2 cut(s)	202, 671
CviAII	CATG	6 cut(s)	199, 209, 304, 395, 508, 515
CviQI	GTAC	2 cut(s)	202, 671
DdeI	CTNAG	5 cut(s)	132, 224, 381, 498, 569
DpnI	GATC	5 cut(s)	243, 420, 561, 639, 820
DpnII	GATC	5 cut(s)	241, 418, 559, 637, 818
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	781
EarI	CTCTTC	1 cut(s)	781
Eco47I	GGWCC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	612
Eco88I	CYCGRG	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	308
EcoT22I	ATGCAT	3 cut(s)	282, 396, 608
FaeI	CATG	6 cut(s)	202, 212, 307, 398, 511, 518
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	6 cut(s)	198, 208, 303, 394, 507, 514
FauNDI	CATATG	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	834
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	1 cut(s)	593
Fsp4HI	GCNGC	1 cut(s)	495
FspBI	CTAG	2 cut(s)	446, 840
GluI	GCNGC	1 cut(s)	495
HaeIII	GGCC	3 cut(s)	308, 652, 722
HapII	CCGG	1 cut(s)	719
Hin1II	CATG	6 cut(s)	202, 212, 307, 398, 511, 518
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	5 cut(s)	76, 195, 215, 575, 773
HpaII	CCGG	1 cut(s)	719
Hpy166II	GTNNAC	2 cut(s)	325, 835
Hpy188I	TCNGA	5 cut(s)	295, 359, 418, 486, 570
Hpy188III	TCNNGA	8 cut(s)	159, 180, 219, 239, 380, 446, 508, 632
Hpy8I	GTNNAC	2 cut(s)	325, 835
HpyAV	CCTTC	2 cut(s)	56, 809
HpyCH4III	ACNGT	2 cut(s)	116, 473
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	6 cut(s)	280, 389, 394, 494, 606, 661
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 658
HpyF3I	CTNAG	5 cut(s)	132, 224, 381, 498, 569
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	6 cut(s)	202, 212, 307, 398, 511, 518
Kzo9I	GATC	5 cut(s)	241, 418, 559, 637, 818
Lsp1109I	GCAGC	1 cut(s)	506
LweI	GCATC	5 cut(s)	267, 289, 481, 593, 615
MaeI	CTAG	2 cut(s)	446, 840
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	3 cut(s)	116, 164, 473
MalI	GATC	5 cut(s)	243, 420, 561, 639, 820
MboI	GATC	5 cut(s)	241, 418, 559, 637, 818
MboII	GAAGA	5 cut(s)	80, 224, 478, 647, 768
MfeI	CAATTG	1 cut(s)	146
MflI	RGATCY	3 cut(s)	559, 637, 818
MhlI	GDGCHC	2 cut(s)	99, 544
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	7 cut(s)	31, 146, 183, 228, 351, 551, 597
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	2 cut(s)	569, 767
MmeI	TCCRAC	2 cut(s)	337, 537
MnlI	CCTC	9 cut(s)	119, 185, 493, 515, 564, 579, 720, 740, 754
Mox20I	TGGCCA	1 cut(s)	308
Mph1103I	ATGCAT	3 cut(s)	282, 396, 608
MroXI	GAANNNNTTC	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	308
MspA1I	CMGCKG	2 cut(s)	497, 644
MspI	CCGG	1 cut(s)	719
MspR9I	CCNGG	1 cut(s)	310
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	2 cut(s)	63, 658
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	5 cut(s)	241, 418, 559, 637, 818
NlaIII	CATG	6 cut(s)	202, 212, 307, 398, 511, 518
NlaIV	GGNNCC	2 cut(s)	543, 561
NsiI	ATGCAT	3 cut(s)	282, 396, 608
PaeR7I	CTCGAG	1 cut(s)	189
PagI	TCATGA	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	3 cut(s)	76, 195, 215
PkrI	GCNGC	1 cut(s)	496
PleI	GAGTC	2 cut(s)	569, 767
PpsI	GAGTC	2 cut(s)	569, 767
PpuMI	RGGWCCY	1 cut(s)	502
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	543, 561
PspPI	GGNCC	1 cut(s)	502
PspPPI	RGGWCCY	1 cut(s)	502
PspXI	VCTCGAGB	1 cut(s)	189
PsuI	RGATCY	3 cut(s)	559, 637, 818
PvuII	CAGCTG	2 cut(s)	497, 644
RsaI	GTAC	2 cut(s)	203, 672
RsaNI	GTAC	2 cut(s)	202, 671
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	5 cut(s)	241, 418, 559, 637, 818
Sau96I	GGNCC	1 cut(s)	502
ScaI	AGTACT	1 cut(s)	672
SchI	GAGTC	2 cut(s)	569, 767
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	2 cut(s)	99, 544
SfaNI	GCATC	5 cut(s)	267, 289, 481, 593, 615
Sfr274I	CTCGAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	502
SlaI	CTCGAG	1 cut(s)	189
SmlI	CTYRAG	2 cut(s)	189, 333
SmoI	CTYRAG	2 cut(s)	189, 333
Sse9I	AATT	7 cut(s)	31, 146, 183, 228, 351, 551, 597
SspMI	CTAG	2 cut(s)	446, 840
StyD4I	CCNGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	116, 473
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	5 cut(s)	111, 190, 220, 584, 665
TasI	AATT	7 cut(s)	31, 146, 183, 228, 351, 551, 597
TatI	WGTACW	1 cut(s)	670
TfiI	GAWTC	3 cut(s)	76, 195, 215
TscAI	CASTG	2 cut(s)	463, 832
TseI	GCWGC	1 cut(s)	494
TspDTI	ATGAA	3 cut(s)	102, 225, 828
TspGWI	ACGGA	3 cut(s)	552, 792, 796
TspRI	CASTG	2 cut(s)	463, 832
VpaK11BI	GGWCC	1 cut(s)	502
XapI	RAATTY	1 cut(s)	31
XbaI	TCTAGA	1 cut(s)	445
XhoI	CTCGAG	1 cut(s)	189
XmiI	GTMKAC	1 cut(s)	834
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	2 cut(s)	446, 840
ZrmI	AGTACT	1 cut(s)	672
Zsp2I	ATGCAT	3 cut(s)	282, 396, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.