pycom05g30960

transmembrane receptor protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000283
Physical Location & Seq
Reverse (-)
30874035 .. 30874865
831 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g30960.1

Sequence Viewer

Length: 831 bp
ATGCTGATGAAGATGTCCATGATCCTTTTGTTGTTTCTCTCCATGCTTAGTTCGCTCAGTTTGATCACCAGTAATGAAACTGGTGAATTTTTAGACATTATCTGCCCAAACACAAACACTTTCACCTCCGACACAGGCTGGCACTCTCCCTCCACCGATAGCTTCCAATCCAATCTCAACAAAGTCCTCAACACCCTTACCTCTCCCGCTGCCCATGACACTGGCTTTTACAACATCACGGCGGGCTTAAATTCTACGGAAAAGGCCTACGGCCTCTTTCTCTGCCAAGGATATGTCTCTACCGACGTTTGCAAAGATTGCGTGACTGCCGCAAGCATAATGGCAGCTCAACGCTGTCCCTCGCGAATAAATGTAATTGTATGGTACGACTACTGCATGCTACGCTACTCAAACGAGTCCTTATCCACCTTGTGTGAATCGCCGATAGTCAACTGGCGGAACACGCAGAATGCAACCGAATGGAATCGGTTCAACCAGGTGCTGGGGGAGAGTATGAACGAGGTGGTCACCGAGGCTACTGTTACTGCCAACAAGTTTGCAACGAAACAGGCAAATATCAGTAGGTTTCTTTCTGTGTACAGCCTCGCACAGTGCACATGGGACCTGTCTGCAGCGGATTGCAACCGGTGTTTAATGCTTGCCGTGGCGCTATTGCCGAGCTGTTGTGAGGGAAGTGTAGGGGGACGAGTTTTGATGCCGAGCTGTAACATTAGGTTTGAAATTTATCCCTTTTACATCCAAAACGCCACCTCAGCACCGGCGACTGCACCGAAGGCTCTTCCTCCTCCTGCACCTAAAGGTACCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr Stress-antifung

Protein Analysis

277

Amino Acids

30.26

Weight (kDa)

5.42

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 50 - 139 4.9e-22 Salt stress response/antifungal
Stress-antifung PF01657 156 - 248 1.1e-10 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 821
AccB1I GGYRCC 1 cut(s) 821
AccB7I CCANNNNNTGG 1 cut(s) 502
AccII CGCG 1 cut(s) 364
AciI CCGC 5 cut(s) 207, 242, 330, 457, 635
AclWI GGATC 1 cut(s) 16
AcsI RAATTY 3 cut(s) 86, 250, 741
AdeI CACNNNGTG 1 cut(s) 432
AfaI GTAC 3 cut(s) 386, 599, 823
AfiI CCNNNNNNNGG 1 cut(s) 502
AgeI ACCGGT 1 cut(s) 645
AgsI TTSAA 2 cut(s) 493, 740
AjnI CCWGG 1 cut(s) 495
AluBI AGCT 4 cut(s) 162, 347, 681, 723
AluI AGCT 4 cut(s) 162, 347, 681, 723
Alw21I GWGCWC 1 cut(s) 617
Alw26I GTCTC 1 cut(s) 301
Alw44I GTGCAC 1 cut(s) 613
AlwI GGATC 1 cut(s) 16
AlwNI CAGNNNCTG 1 cut(s) 502
AoxI GGCC 2 cut(s) 264, 271
ApaLI GTGCAC 1 cut(s) 613
ApeKI GCWGC 3 cut(s) 209, 344, 632
ApoI RAATTY 3 cut(s) 86, 250, 741
AsiGI ACCGGT 1 cut(s) 645
Asp700I GAANNNNTTC 1 cut(s) 488
Asp718I GGTACC 1 cut(s) 821
AspLEI GCGC 1 cut(s) 670
AspS9I GGNCC 1 cut(s) 622
AsuHPI GGTGA 4 cut(s) 58, 95, 115, 520
AvaII GGWCC 1 cut(s) 622
BaeGI GKGCMC 1 cut(s) 617
BanI GGYRCC 1 cut(s) 821
Bbv12I GWGCWC 1 cut(s) 617
BbvCI CCTCAGC 1 cut(s) 772
BbvI GCAGC 3 cut(s) 196, 356, 644
BceAI ACGGC 3 cut(s) 255, 286, 647
BciT130I CCWGG 1 cut(s) 497
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 301
BfmI CTRYAG 1 cut(s) 630
BfoI RGCGCY 1 cut(s) 671
BisI GCNGC 4 cut(s) 210, 330, 345, 633
BlsI GCNGC 4 cut(s) 211, 331, 346, 634
Bme1390I CCNGG 1 cut(s) 497
Bme18I GGWCC 1 cut(s) 622
BmgT120I GGNCC 1 cut(s) 622
BmiI GGNNCC 2 cut(s) 623, 823
BmrFI CCNGG 1 cut(s) 497
BmsI GCATC 1 cut(s) 705
Bpu10I CCTNAGC 1 cut(s) 772
BsaJI CCNNGG 3 cut(s) 286, 531, 663
BsaWI WCCGGW 1 cut(s) 645
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse118I RCCGGY 2 cut(s) 645, 778
Bse1I ACTGG 4 cut(s) 69, 85, 226, 458
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 3 cut(s) 286, 531, 663
BseGI GGATG 1 cut(s) 756
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMII CTCAG 2 cut(s) 70, 786
BseNI ACTGG 4 cut(s) 69, 85, 226, 458
BseRI GAGGAG 1 cut(s) 795
BseSI GKGCMC 1 cut(s) 617
BseXI GCAGC 3 cut(s) 196, 356, 644
BseYI CCCAGC 1 cut(s) 502
BsgI GTGCAG 2 cut(s) 771, 795
Bsh1236I CGCG 1 cut(s) 364
BshFI GGCC 2 cut(s) 266, 273
BshNI GGYRCC 1 cut(s) 821
BshTI ACCGGT 1 cut(s) 645
BsiHKAI GWGCWC 1 cut(s) 617
BsiSI CCGG 2 cut(s) 646, 779
BslFI GGGAC 3 cut(s) 342, 635, 717
BslI CCNNNNNNNGG 1 cut(s) 502
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 3 cut(s) 342, 635, 717
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 2 cut(s) 266, 273
Bsp1286I GDGCHC 1 cut(s) 617
Bsp1407I TGTACA 1 cut(s) 597
Bsp143I GATC 2 cut(s) 21, 63
Bsp68I TCGCGA 1 cut(s) 364
BspACI CCGC 5 cut(s) 207, 242, 330, 457, 635
BspANI GGCC 2 cut(s) 266, 273
BspCNI CTCAG 2 cut(s) 69, 785
BspFNI CGCG 1 cut(s) 364
BspLI GGNNCC 2 cut(s) 623, 823
BspMAI CTGCAG 1 cut(s) 634
BspPI GGATC 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 804
BspT107I GGYRCC 1 cut(s) 821
BsrFI RCCGGY 2 cut(s) 645, 778
BsrGI TGTACA 1 cut(s) 597
BsrI ACTGG 4 cut(s) 69, 85, 226, 458
BssAI RCCGGY 2 cut(s) 645, 778
BssECI CCNNGG 3 cut(s) 286, 531, 663
BssMI GATC 2 cut(s) 21, 63
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 497
Bst4CI ACNGT 2 cut(s) 541, 612
Bst6I CTCTTC 1 cut(s) 804
BstAPI GCANNNNNTGC 1 cut(s) 318
BstAUI TGTACA 1 cut(s) 597
BstC8I GCNNGC 5 cut(s) 140, 244, 334, 398, 660
BstDEI CTNAG 3 cut(s) 47, 56, 772
BstDSI CCRYGG 1 cut(s) 663
BstEII GGTNACC 1 cut(s) 526
BstF5I GGATG 1 cut(s) 756
BstFNI CGCG 1 cut(s) 364
BstH2I RGCGCY 1 cut(s) 671
BstHHI GCGC 1 cut(s) 670
BstKTI GATC 2 cut(s) 24, 66
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 2 cut(s) 21, 63
BstMWI GCNNNNNNNGC 6 cut(s) 52, 318, 402, 463, 773, 794
BstNI CCWGG 1 cut(s) 497
BstNSI RCATGY 1 cut(s) 400
BstPI GGTNACC 1 cut(s) 526
BstSCI CCNGG 1 cut(s) 495
BstSFI CTRYAG 1 cut(s) 630
BstSLI GKGCMC 1 cut(s) 617
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 3 cut(s) 196, 356, 644
BstXI CCANNNNNNTGG 1 cut(s) 221
BsuRI GGCC 2 cut(s) 266, 273
BtgI CCRYGG 1 cut(s) 663
BtsCI GGATG 1 cut(s) 756
BtsIMutI CAGTG 2 cut(s) 219, 617
BtuMI TCGCGA 1 cut(s) 364
Cac8I GCNNGC 5 cut(s) 140, 244, 334, 398, 660
CaiI CAGNNNCTG 1 cut(s) 502
CfoI GCGC 1 cut(s) 670
Cfr10I RCCGGY 2 cut(s) 645, 778
Cfr13I GGNCC 1 cut(s) 622
CsiI ACCWGGT 1 cut(s) 495
Csp6I GTAC 3 cut(s) 385, 598, 822
CspAI ACCGGT 1 cut(s) 645
CviAII CATG 5 cut(s) 19, 43, 215, 397, 618
CviQI GTAC 3 cut(s) 385, 598, 822
DdeI CTNAG 3 cut(s) 47, 56, 772
DpnI GATC 2 cut(s) 23, 65
DpnII GATC 2 cut(s) 21, 63
DraIII CACNNNGTG 1 cut(s) 432
Eam1104I CTCTTC 1 cut(s) 804
EarI CTCTTC 1 cut(s) 804
EciI GGCGGA 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 286
Eco147I AGGCCT 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 622
Eco91I GGTNACC 1 cut(s) 526
EcoO109I RGGNCCY 1 cut(s) 622
EcoO65I GGTNACC 1 cut(s) 526
EcoRII CCWGG 1 cut(s) 495
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 5 cut(s) 22, 46, 218, 400, 621
FaiI YATR 9 cut(s) 20, 44, 216, 294, 338, 382, 398, 515, 619
FaqI GGGAC 3 cut(s) 342, 635, 717
FatI CATG 5 cut(s) 18, 42, 214, 396, 617
FauI CCCGC 2 cut(s) 214, 235
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 4 cut(s) 210, 330, 345, 633
FokI GGATG 1 cut(s) 743
Fsp4HI GCNGC 4 cut(s) 210, 330, 345, 633
GlaI GCGC 1 cut(s) 669
GluI GCNGC 4 cut(s) 210, 330, 345, 633
GsaI CCCAGC 1 cut(s) 506
HaeII RGCGCY 1 cut(s) 671
HaeIII GGCC 2 cut(s) 266, 273
HapII CCGG 2 cut(s) 646, 779
HhaI GCGC 1 cut(s) 670
Hin1II CATG 5 cut(s) 22, 46, 218, 400, 621
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 3 cut(s) 416, 437, 484
HpaII CCGG 2 cut(s) 646, 779
HphI GGTGA 4 cut(s) 58, 95, 115, 520
Hpy166II GTNNAC 3 cut(s) 451, 598, 615
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 363
Hpy8I GTNNAC 3 cut(s) 451, 598, 615
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 1 cut(s) 787
HpyCH4III ACNGT 2 cut(s) 541, 612
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 9 cut(s) 312, 396, 473, 560, 615, 632, 642, 788, 812
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 318, 402, 463, 773, 794
HpyF3I CTNAG 3 cut(s) 47, 56, 772
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 5 cut(s) 22, 46, 218, 400, 621
HspAI GCGC 1 cut(s) 668
KpnI GGTACC 1 cut(s) 825
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 2 cut(s) 21, 63
LguI GCTCTTC 1 cut(s) 804
Lsp1109I GCAGC 3 cut(s) 196, 356, 644
LweI GCATC 1 cut(s) 705
MabI ACCWGGT 1 cut(s) 495
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 4 cut(s) 322, 526, 541, 725
MalI GATC 2 cut(s) 23, 65
MboI GATC 2 cut(s) 21, 63
MboII GAAGA 2 cut(s) 22, 791
MfeI CAATTG 1 cut(s) 826
MhlI GDGCHC 1 cut(s) 617
MluCI AATT 5 cut(s) 86, 250, 375, 741, 826
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 153
MroXI GAANNNNTTC 1 cut(s) 488
MseI TTAA 2 cut(s) 248, 653
MspA1I CMGCKG 2 cut(s) 209, 635
MspI CCGG 2 cut(s) 646, 779
MspR9I CCNGG 1 cut(s) 497
MunI CAATTG 1 cut(s) 826
Mva1269I GAATGC 1 cut(s) 475
MvaI CCWGG 1 cut(s) 497
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 6 cut(s) 52, 318, 402, 463, 773, 794
NdeII GATC 2 cut(s) 21, 63
NlaIII CATG 5 cut(s) 22, 46, 218, 400, 621
NlaIV GGNNCC 2 cut(s) 623, 823
NmeAIII GCCGAG 2 cut(s) 702, 744
NmuCI GTSAC 2 cut(s) 322, 526
NruI TCGCGA 1 cut(s) 364
NspI RCATGY 1 cut(s) 400
PaeI GCATGC 1 cut(s) 400
PceI AGGCCT 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 804
PctI GAATGC 1 cut(s) 475
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 2 cut(s) 437, 484
PflMI CCANNNNNTGG 1 cut(s) 502
PinAI ACCGGT 1 cut(s) 645
PkrI GCNGC 4 cut(s) 211, 331, 346, 634
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PpuMI RGGWCCY 1 cut(s) 622
Psp5II RGGWCCY 1 cut(s) 622
Psp6I CCWGG 1 cut(s) 495
PspEI GGTNACC 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 502
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 2 cut(s) 623, 823
PspPI GGNCC 1 cut(s) 622
PspPPI RGGWCCY 1 cut(s) 622
PstI CTGCAG 1 cut(s) 634
PstNI CAGNNNCTG 1 cut(s) 502
RruI TCGCGA 1 cut(s) 364
RsaI GTAC 3 cut(s) 386, 599, 823
RsaNI GTAC 3 cut(s) 385, 598, 822
SapI GCTCTTC 1 cut(s) 804
SaqAI TTAA 2 cut(s) 248, 653
SatI GCNGC 4 cut(s) 210, 330, 345, 633
Sau3AI GATC 2 cut(s) 21, 63
Sau96I GGNCC 1 cut(s) 622
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 497
SduI GDGCHC 1 cut(s) 617
SexAI ACCWGGT 1 cut(s) 495
SfaNI GCATC 1 cut(s) 705
SfcI CTRYAG 1 cut(s) 630
SgrAI CRCCGGYG 1 cut(s) 778
SinI GGWCC 1 cut(s) 622
SphI GCATGC 1 cut(s) 400
Sse9I AATT 5 cut(s) 86, 250, 375, 741, 826
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 5 cut(s) 207, 242, 330, 457, 635
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 495
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 2 cut(s) 541, 612
TaiI ACGT 1 cut(s) 309
TasI AATT 5 cut(s) 86, 250, 375, 741, 826
TatI WGTACW 1 cut(s) 597
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 2 cut(s) 437, 484
Tru1I TTAA 2 cut(s) 248, 653
Tru9I TTAA 2 cut(s) 248, 653
TscAI CASTG 2 cut(s) 226, 617
TseFI GTSAC 2 cut(s) 322, 526
TseI GCWGC 3 cut(s) 209, 344, 632
Tsp45I GTSAC 2 cut(s) 322, 526
TspDTI ATGAA 3 cut(s) 23, 90, 530
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 2 cut(s) 226, 617
Van91I CCANNNNNTGG 1 cut(s) 502
VneI GTGCAC 1 cut(s) 613
VpaK11BI GGWCC 1 cut(s) 622
XapI RAATTY 3 cut(s) 86, 250, 741
XceI RCATGY 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.