Rh5CG041300

Cysteine-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000283
Physical Location & Seq
Forward (+)
2800489 .. 2801789
1301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG041300.1

Sequence Viewer

Length: 1104 bp
ATGATTATCATAATGTCTTCTAATCTGTTCACGGCCCTTGTGGTGCTCTCCATTCTTGGCTTCCTTAGCGTTAGCGTTGAAGCTCAAGCACCAAATTACCGGTATCATATCTGTCCAAACACAAAAAATTTCACTCCCAACAGCTCCTACCAGTCTAATCGAAATCTCCTCCTCTCCTATCTCACATCCAACGCCACACGTGATATTGGATTTTACTACACCACCGCGGGCGTGCAAGACTCCACTGCAGAAGTAGTTTACGGTTCTTTCCTATGCCGTGGAGATCTCACCCCTGAGTTGTGCCAAGAATATGTTACTATTGTAGCCAAAGATGTTGTCCAACAGTACTGCCCCTTGGGAAAATCCGCAATAATATGGTACGACGAGTGCATGTTGCGCTACAAAAACCAGTCTTACTTGAACAGAATGGACGACTTTCCTCGAGCTTACCTGTGGAATCCTGCGAACATTACTGACCCTACCCGCTTTATGCAGCTGGTGGCAGAAACAATCAATGGCTTGGTGGCTCCGGCTTCAAATGCACCCTCCGGTGCTAAAAAGTATGCAACAAAAGAAGCAGTTTTCACAGGGTTTCAGCAGTTGTACAGCCTTGTGCAGTGCACACCAGACCTATCAAGCACAAGTTGTGTTACATGTCTTCGAGGAGCTATTGCGCAAATTCCAGGTTGTTGTACTGGAAAGCAAGGCGGTAGAGTTTTATATCCTAGTTGTAATGTTCGATATGAAGTTTCTCCATTTTATACAACTGAAGCAGCCACACCTTCACCACCGCCACAACCTCTGACTCTTCCTCCCCCACCTCCAGGAAACGATCAAATCTCATCCTTAATCATAGTGGCCATTGTTGTTCCAATTGCCATAGTGCTTTTCTTGGTAGGCTGCTTTTTTCTAAGAAGAAAGACAAGAAAAAAGTATGATGCTTTACAAGGCCAGAATGGGGAGAATGAAATTACTACTGTGGAGTCATTGCAGTTTGATTTTGCTACAATTGAAGCAGCCACAAACCAGTTCTCTGTTAATAATAGATTAGGGGAAGGTGGCTTTGGGGAGGTTTACAAGGTAATTATGACGTTTGATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

367

Amino Acids

40.47

Weight (kDa)

5.97

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 38 - 137 6.8e-22 Salt stress response/antifungal
Stress-antifung PF01657 156 - 249 6.1e-12 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 675
AccII CGCG 1 cut(s) 227
AciI CCGC 6 cut(s) 225, 227, 366, 484, 708, 791
AcoI YGGCCR 1 cut(s) 858
AcsI RAATTY 2 cut(s) 127, 678
AcuI CTGAAG 1 cut(s) 789
AcvI CACGTG 1 cut(s) 200
AfaI GTAC 4 cut(s) 347, 380, 605, 694
AfiI CCNNNNNNNGG 2 cut(s) 824, 958
AflIII ACRYGT 2 cut(s) 197, 653
AgeI ACCGGT 1 cut(s) 99
AgsI TTSAA 4 cut(s) 80, 421, 537, 1013
AjnI CCWGG 2 cut(s) 682, 823
AjuI GAANNNNNNNTTGG 2 cut(s) 1047, 1079
AluBI AGCT 5 cut(s) 83, 144, 446, 496, 668
AluI AGCT 5 cut(s) 83, 144, 446, 496, 668
Alw21I GWGCWC 2 cut(s) 48, 623
Alw44I GTGCAC 1 cut(s) 619
Ama87I CYCGRG 1 cut(s) 441
AoxI GGCC 3 cut(s) 33, 858, 949
ApaLI GTGCAC 1 cut(s) 619
ApeKI GCWGC 4 cut(s) 493, 773, 900, 1016
ApoI RAATTY 2 cut(s) 127, 678
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
AsiGI ACCGGT 1 cut(s) 99
AspLEI GCGC 2 cut(s) 399, 676
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 2 cut(s) 280, 777
AvaI CYCGRG 1 cut(s) 441
BaeGI GKGCMC 1 cut(s) 623
BalI TGGCCA 1 cut(s) 860
BbrPI CACGTG 1 cut(s) 200
BbsI GAAGAC 2 cut(s) 9, 650
Bbv12I GWGCWC 2 cut(s) 48, 623
BbvI GCAGC 4 cut(s) 505, 785, 887, 1028
BceAI ACGGC 2 cut(s) 48, 261
BciT130I CCWGG 2 cut(s) 684, 825
BfaI CTAG 1 cut(s) 726
BfmI CTRYAG 1 cut(s) 246
BglII AGATCT 1 cut(s) 283
BisI GCNGC 4 cut(s) 494, 774, 901, 1017
BlsI GCNGC 4 cut(s) 495, 775, 902, 1018
BmcAI AGTACT 1 cut(s) 347
Bme1390I CCNGG 2 cut(s) 684, 825
BmeT110I CYCGRG 1 cut(s) 441
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 528
BmrFI CCNGG 2 cut(s) 684, 825
BmsI GCATC 1 cut(s) 928
BpiI GAAGAC 2 cut(s) 9, 650
BpmI CTGGAG 1 cut(s) 807
Bpu10I CCTNAGC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 200
BsaJI CCNNGG 3 cut(s) 225, 277, 354
BsaWI WCCGGW 2 cut(s) 99, 548
BsaXI ACNNNNNCTCC 2 cut(s) 796, 826
Bsc4I CCNNNNNNNGG 2 cut(s) 824, 958
Bse118I RCCGGY 1 cut(s) 99
Bse1I ACTGG 4 cut(s) 151, 409, 700, 1027
Bse3DI GCAATG 1 cut(s) 986
BseBI CCWGG 2 cut(s) 684, 825
BseDI CCNNGG 3 cut(s) 225, 277, 354
BseGI GGATG 2 cut(s) 185, 842
BseLI CCNNNNNNNGG 2 cut(s) 824, 958
BseMI GCAATG 1 cut(s) 986
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 4 cut(s) 151, 409, 700, 1027
BseRI GAGGAG 3 cut(s) 158, 161, 678
BseSI GKGCMC 1 cut(s) 623
BseXI GCAGC 4 cut(s) 505, 785, 887, 1028
BsgI GTGCAG 1 cut(s) 635
Bsh1236I CGCG 1 cut(s) 227
BshFI GGCC 3 cut(s) 35, 860, 951
BshTI ACCGGT 1 cut(s) 99
BsiHKAI GWGCWC 2 cut(s) 48, 623
BsiHKCI CYCGRG 1 cut(s) 441
BsiSI CCGG 3 cut(s) 100, 530, 549
BslI CCNNNNNNNGG 2 cut(s) 824, 958
BsnI GGCC 3 cut(s) 35, 860, 951
BsoBI CYCGRG 1 cut(s) 441
Bsp1286I GDGCHC 2 cut(s) 48, 623
Bsp1407I TGTACA 1 cut(s) 603
Bsp143I GATC 2 cut(s) 283, 832
BspACI CCGC 6 cut(s) 225, 227, 366, 484, 708, 791
BspANI GGCC 3 cut(s) 35, 860, 951
BspCNI CTCAG 1 cut(s) 286
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 528
BspMAI CTGCAG 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 986
BsrFI RCCGGY 1 cut(s) 99
BsrGI TGTACA 1 cut(s) 603
BsrI ACTGG 4 cut(s) 151, 409, 700, 1027
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 3 cut(s) 225, 277, 354
BssMI GATC 2 cut(s) 283, 832
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 2 cut(s) 684, 825
Bst4CI ACNGT 3 cut(s) 263, 345, 979
Bst6I CTCTTC 1 cut(s) 813
BstAUI TGTACA 1 cut(s) 603
BstBAI YACGTR 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 229, 233
BstDEI CTNAG 3 cut(s) 65, 294, 911
BstDSI CCRYGG 2 cut(s) 225, 277
BstF5I GGATG 2 cut(s) 185, 842
BstFNI CGCG 1 cut(s) 227
BstHHI GCGC 2 cut(s) 399, 676
BstKTI GATC 2 cut(s) 286, 835
BstMBI GATC 2 cut(s) 283, 832
BstMWI GCNNNNNNNGC 3 cut(s) 66, 396, 539
BstNI CCWGG 2 cut(s) 684, 825
BstNSI RCATGY 2 cut(s) 394, 657
BstSCI CCNGG 2 cut(s) 682, 823
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 623
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 505, 785, 887, 1028
BstV2I GAAGAC 2 cut(s) 9, 650
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 3 cut(s) 35, 860, 951
BtgI CCRYGG 2 cut(s) 225, 277
BtsCI GGATG 2 cut(s) 185, 842
BtsI GCAGTG 2 cut(s) 243, 623
BtsIMutI CAGTG 2 cut(s) 243, 623
Cac8I GCNNGC 2 cut(s) 229, 233
CfoI GCGC 2 cut(s) 399, 676
Cfr10I RCCGGY 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 34
Cfr42I CCGCGG 1 cut(s) 228
Csp6I GTAC 4 cut(s) 346, 379, 604, 693
CspAI ACCGGT 1 cut(s) 99
CviAII CATG 2 cut(s) 391, 654
CviQI GTAC 4 cut(s) 346, 379, 604, 693
DdeI CTNAG 3 cut(s) 65, 294, 911
DpnI GATC 2 cut(s) 285, 834
DpnII GATC 2 cut(s) 283, 832
EaeI YGGCCR 1 cut(s) 858
Eam1104I CTCTTC 1 cut(s) 813
EarI CTCTTC 1 cut(s) 813
Eco130I CCWWGG 1 cut(s) 354
Eco57I CTGAAG 1 cut(s) 789
Eco72I CACGTG 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 441
EcoRII CCWGG 2 cut(s) 682, 823
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 2 cut(s) 394, 657
FatI CATG 2 cut(s) 390, 653
FauI CCCGC 2 cut(s) 220, 491
Fnu4HI GCNGC 4 cut(s) 494, 774, 901, 1017
FokI GGATG 2 cut(s) 172, 829
Fsp4HI GCNGC 4 cut(s) 494, 774, 901, 1017
FspBI CTAG 1 cut(s) 726
FspI TGCGCA 1 cut(s) 675
GlaI GCGC 2 cut(s) 398, 675
GluI GCNGC 4 cut(s) 494, 774, 901, 1017
GsuI CTGGAG 1 cut(s) 807
HaeIII GGCC 3 cut(s) 35, 860, 951
HapII CCGG 3 cut(s) 100, 530, 549
HhaI GCGC 2 cut(s) 399, 676
Hin1II CATG 2 cut(s) 394, 657
Hin6I GCGC 2 cut(s) 397, 674
HinP1I GCGC 2 cut(s) 397, 674
HinfI GANTC 5 cut(s) 239, 457, 805, 983, 1097
HpaII CCGG 3 cut(s) 100, 530, 549
HphI GGTGA 2 cut(s) 280, 777
Hpy166II GTNNAC 4 cut(s) 30, 259, 621, 1075
Hpy188I TCNGA 1 cut(s) 804
Hpy8I GTNNAC 4 cut(s) 30, 259, 621, 1075
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 2 cut(s) 792, 1049
HpyCH4III ACNGT 3 cut(s) 263, 345, 979
HpyCH4IV ACGT 2 cut(s) 199, 1091
HpyCH4V TGCA 9 cut(s) 235, 248, 390, 493, 542, 566, 616, 621, 991
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 396, 539
HpyF3I CTNAG 3 cut(s) 65, 294, 911
HpySE526I ACGT 2 cut(s) 199, 1091
Hsp92II CATG 2 cut(s) 394, 657
HspAI GCGC 2 cut(s) 397, 674
KspI CCGCGG 1 cut(s) 228
Kzo9I GATC 2 cut(s) 283, 832
LmnI GCTCC 3 cut(s) 149, 532, 665
Lsp1109I GCAGC 4 cut(s) 505, 785, 887, 1028
LweI GCATC 1 cut(s) 928
MaeI CTAG 1 cut(s) 726
MaeII ACGT 2 cut(s) 199, 1091
MaeIII GTNAC 2 cut(s) 313, 649
MalI GATC 2 cut(s) 285, 834
MboI GATC 2 cut(s) 283, 832
MboII GAAGA 4 cut(s) 9, 650, 800, 927
MfeI CAATTG 2 cut(s) 873, 1008
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 2 cut(s) 48, 623
MlsI TGGCCA 1 cut(s) 860
MluCI AATT 7 cut(s) 94, 127, 678, 873, 969, 1008, 1083
MluNI TGGCCA 1 cut(s) 860
MlyI GAGTC 3 cut(s) 233, 799, 992
MmeI TCCRAC 2 cut(s) 213, 364
MnlI CCTC 9 cut(s) 179, 182, 450, 556, 656, 810, 822, 831, 1063
Mox20I TGGCCA 1 cut(s) 860
MscI TGGCCA 1 cut(s) 860
MseI TTAA 2 cut(s) 848, 1038
Msp20I TGGCCA 1 cut(s) 860
MspA1I CMGCKG 2 cut(s) 227, 496
MspI CCGG 3 cut(s) 100, 530, 549
MspR9I CCNGG 2 cut(s) 684, 825
MunI CAATTG 2 cut(s) 873, 1008
MvaI CCWGG 2 cut(s) 684, 825
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 3 cut(s) 66, 396, 539
NdeII GATC 2 cut(s) 283, 832
NlaIII CATG 2 cut(s) 394, 657
NlaIV GGNNCC 1 cut(s) 528
NsbI TGCGCA 1 cut(s) 675
NspI RCATGY 2 cut(s) 394, 657
PaeR7I CTCGAG 1 cut(s) 441
PciI ACATGT 1 cut(s) 653
PfeI GAWTC 2 cut(s) 457, 1097
PfoI TCCNGGA 1 cut(s) 823
PinAI ACCGGT 1 cut(s) 99
PkrI GCNGC 4 cut(s) 495, 775, 902, 1018
PleI GAGTC 3 cut(s) 233, 799, 991
PmaCI CACGTG 1 cut(s) 200
PmlI CACGTG 1 cut(s) 200
PpsI GAGTC 3 cut(s) 233, 799, 991
Ppu21I YACGTR 1 cut(s) 200
PscI ACATGT 1 cut(s) 653
Psp6I CCWGG 2 cut(s) 682, 823
PspCI CACGTG 1 cut(s) 200
PspGI CCWGG 2 cut(s) 682, 823
PspN4I GGNNCC 1 cut(s) 528
PspPI GGNCC 1 cut(s) 34
PspXI VCTCGAGB 1 cut(s) 441
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 283
PvuII CAGCTG 1 cut(s) 496
RsaI GTAC 4 cut(s) 347, 380, 605, 694
RsaNI GTAC 4 cut(s) 346, 379, 604, 693
SacII CCGCGG 1 cut(s) 228
SaqAI TTAA 2 cut(s) 848, 1038
SatI GCNGC 4 cut(s) 494, 774, 901, 1017
Sau3AI GATC 2 cut(s) 283, 832
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 347
SchI GAGTC 3 cut(s) 233, 799, 992
ScrFI CCNGG 2 cut(s) 684, 825
SduI GDGCHC 2 cut(s) 48, 623
SfaNI GCATC 1 cut(s) 928
SfcI CTRYAG 1 cut(s) 246
Sfr274I CTCGAG 1 cut(s) 441
Sfr303I CCGCGG 1 cut(s) 228
SgrBI CCGCGG 1 cut(s) 228
SlaI CTCGAG 1 cut(s) 441
SmlI CTYRAG 2 cut(s) 84, 441
SmoI CTYRAG 2 cut(s) 84, 441
Sse9I AATT 7 cut(s) 94, 127, 678, 873, 969, 1008, 1083
SsiI CCGC 6 cut(s) 225, 227, 366, 484, 708, 791
SspMI CTAG 1 cut(s) 726
StyD4I CCNGG 2 cut(s) 682, 823
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 3 cut(s) 263, 345, 979
TaiI ACGT 2 cut(s) 202, 1094
TaqI TCGA 4 cut(s) 160, 442, 661, 739
TasI AATT 7 cut(s) 94, 127, 678, 873, 969, 1008, 1083
TatI WGTACW 3 cut(s) 345, 603, 692
TfiI GAWTC 2 cut(s) 457, 1097
Tru1I TTAA 2 cut(s) 848, 1038
Tru9I TTAA 2 cut(s) 848, 1038
TscAI CASTG 2 cut(s) 250, 623
TseI GCWGC 4 cut(s) 493, 773, 900, 1016
TspDTI ATGAA 3 cut(s) 759, 981, 1089
TspRI CASTG 2 cut(s) 250, 623
VneI GTGCAC 1 cut(s) 619
XapI RAATTY 2 cut(s) 127, 678
XceI RCATGY 2 cut(s) 394, 657
XhoI CTCGAG 1 cut(s) 441
XspI CTAG 1 cut(s) 726
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.