Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8162658.1

Orthogroup ID

OG0000283

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 664

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8162658.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

aatctgaagaaaaaaggggtacaaaaggaggacctggagctcccgatcttcaacatgagcacaatagctcgtgcaacagataacttttcagattatatgaagcttggagaaggtggctttggacctgtttacagggggacactagcagatggacaagaaattgctgtgaagaggctttcaagcagttctggccaaggatttaacgagttcatgaatgaaattaaactgatagccaaacttcagcaccgcaatcttgtaaagattcttggttgttgcgtgcaagaagagaaaatgctgatgtatgaatacatgcccaacagaagcctggacttcttcatttttgatcaaacaagggaagaactactgttagattggcctaaacgtttccacatcatttgtggaattgctcggggtctcctctatctccaccaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

144

Amino Acids

16.61

Weight (kDa)

7.88

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca	FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica	MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica	Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis	pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis	RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata	RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora	Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa	Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha	Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana	Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	247
AclI	AACGTT	1 cut(s)	382
AcoI	YGGCCR	1 cut(s)	190
AcuI	CTGAAG	2 cut(s)	26, 224
AfaI	GTAC	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	52, 180
AjnI	CCWGG	2 cut(s)	33, 324
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	3 cut(s)	40, 68, 103
AluI	AGCT	3 cut(s)	40, 68, 103
Alw21I	GWGCWC	2 cut(s)	42, 62
Alw26I	GTCTC	1 cut(s)	419
Ama87I	CYCGRG	1 cut(s)	408
AoxI	GGCC	2 cut(s)	190, 374
AspS9I	GGNCC	2 cut(s)	31, 122
AvaI	CYCGRG	1 cut(s)	408
AvaII	GGWCC	2 cut(s)	31, 122
BalI	TGGCCA	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	42, 62
BccI	CCATC	1 cut(s)	143
BciT130I	CCWGG	2 cut(s)	35, 326
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	1 cut(s)	143
Bme1390I	CCNGG	2 cut(s)	35, 326
Bme18I	GGWCC	2 cut(s)	31, 122
BmeT110I	CYCGRG	1 cut(s)	408
BmgT120I	GGNCC	2 cut(s)	31, 122
BmrFI	CCNGG	2 cut(s)	35, 326
BpmI	CTGGAG	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	193
BseBI	CCWGG	2 cut(s)	35, 326
BseDI	CCNNGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	407
BshFI	GGCC	2 cut(s)	192, 376
BsiHKAI	GWGCWC	2 cut(s)	42, 62
BsiHKCI	CYCGRG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	192, 376
Bso31I	GGTCTC	1 cut(s)	419
BsoBI	CYCGRG	1 cut(s)	408
Bsp1286I	GDGCHC	2 cut(s)	42, 62
Bsp143I	GATC	2 cut(s)	45, 343
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	2 cut(s)	192, 376
BspHI	TCATGA	1 cut(s)	210
BspTNI	GGTCTC	1 cut(s)	419
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	2 cut(s)	45, 343
BssSI	CACGAG	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	193
Bst2BI	CACGAG	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	35, 326
Bst4CI	ACNGT	1 cut(s)	366
Bst6I	CTCTTC	2 cut(s)	164, 279
BstC8I	GCNNGC	1 cut(s)	278
BstKTI	GATC	2 cut(s)	48, 346
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	2 cut(s)	45, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNI	CCWGG	2 cut(s)	35, 326
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	2 cut(s)	33, 324
BsuRI	GGCC	2 cut(s)	192, 376
Cac8I	GCNNGC	1 cut(s)	278
CciI	TCATGA	1 cut(s)	210
Cfr13I	GGNCC	2 cut(s)	31, 122
Csp6I	GTAC	1 cut(s)	20
CspCI	CAANNNNNGTGG	2 cut(s)	377, 412
CviAII	CATG	3 cut(s)	55, 211, 310
CviJI	RGCY	9 cut(s)	40, 68, 103, 117, 175, 192, 233, 324, 376
CviKI_1	RGCY	9 cut(s)	40, 68, 103, 117, 175, 192, 233, 324, 376
CviQI	GTAC	1 cut(s)	20
DpnI	GATC	2 cut(s)	47, 345
DpnII	GATC	2 cut(s)	45, 343
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	2 cut(s)	164, 279
EarI	CTCTTC	2 cut(s)	164, 279
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	419
Eco47I	GGWCC	2 cut(s)	31, 122
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	2 cut(s)	26, 224
Eco88I	CYCGRG	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRII	CCWGG	2 cut(s)	33, 324
EcoT14I	CCWWGG	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	3 cut(s)	58, 214, 313
FaiI	YATR	6 cut(s)	56, 96, 98, 212, 303, 311
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	3 cut(s)	54, 210, 309
FbaI	TGATCA	1 cut(s)	343
FriOI	GRGCYC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	192, 376
Hin1II	CATG	3 cut(s)	58, 214, 313
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	6, 91
Hpy188III	TCNNGA	2 cut(s)	43, 211
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	2 cut(s)	74, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	3 cut(s)	58, 214, 313
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	45, 343
LmnI	GCTCC	2 cut(s)	37, 45
LpnPI	CCDG	7 cut(s)	20, 47, 118, 138, 174, 311, 338
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	382
MalI	GATC	2 cut(s)	47, 345
MboI	GATC	2 cut(s)	45, 343
MboII	GAAGA	6 cut(s)	19, 40, 181, 296, 325, 368
MhlI	GDGCHC	2 cut(s)	42, 62
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	3 cut(s)	159, 219, 402
MluNI	TGGCCA	1 cut(s)	192
MnlI	CCTC	3 cut(s)	22, 165, 428
Mox20I	TGGCCA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	192
MseI	TTAA	2 cut(s)	201, 222
Msp20I	TGGCCA	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	35, 326
MvaI	CCWGG	2 cut(s)	35, 326
MwoI	GCNNNNNNNGC	1 cut(s)	189
NdeII	GATC	2 cut(s)	45, 343
NlaIII	CATG	3 cut(s)	58, 214, 313
NspI	RCATGY	1 cut(s)	313
PagI	TCATGA	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	262
PpuMI	RGGWCCY	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	42
Psp1406I	AACGTT	1 cut(s)	382
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	2 cut(s)	33, 324
PspGI	CCWGG	2 cut(s)	33, 324
PspPI	GGNCC	2 cut(s)	31, 122
PspPPI	RGGWCCY	1 cut(s)	31
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	201, 222
Sau3AI	GATC	2 cut(s)	45, 343
Sau96I	GGNCC	2 cut(s)	31, 122
ScrFI	CCNGG	2 cut(s)	35, 326
SduI	GDGCHC	2 cut(s)	42, 62
SetI	ASST	7 cut(s)	36, 42, 70, 105, 115, 127, 385
SinI	GGWCC	2 cut(s)	31, 122
Sse9I	AATT	3 cut(s)	159, 219, 402
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	1 cut(s)	143
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	33, 324
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	366
TaiI	ACGT	1 cut(s)	385
TasI	AATT	3 cut(s)	159, 219, 402
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	2 cut(s)	201, 222
Tru9I	TTAA	2 cut(s)	201, 222
TspDTI	ATGAA	6 cut(s)	113, 199, 227, 231, 318, 325
VpaK11BI	GGWCC	2 cut(s)	31, 122
XceI	RCATGY	1 cut(s)	313
XcmI	CCANNNNNNNNNTGG	2 cut(s)	322, 395
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.