MD01G1098200.v1.1

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
21209767 .. 21210865
1099 bp
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UTR
Exon/CDS
Intron
MD01G1098200.v1.1.491

Sequence Viewer

Length: 537 bp
ATGGTAAAAAGAAGAAGCAAACAATTAAATTCAGTCGATCACTTGTTCTTTTATGTTTTCCGATGTCAATTACGTTTTTCTGATAGTAATAAGTTTGATCAAGGCGGATTTGGTGAAGTTTTCAAGAAAAGCTCGGTGCAAGGTGTACAAGAGCTTAAGAATGAAGTTCTATTGATAGCCAAGCTTCAGCACAGAAATCTAGTGAAGCTTCTGGGATTTTGCTTGGAAGGAGAAGAAACCATACTTGTCTATGAATATGTGCCTAACAAAAGTTTTGATTATTTTCTAAATGAATCGAAAAAACGAGAACAATTGAATTGGTCAAGACATTGCATGATAATTGGAGGAATAGCTCGAGGAATTCTATATCTTCATGAAGATTCAAGGCTTAGAGTTATACATCGCGATTTGAAACCGAGCAATATCTTATTAGATGTTAATATGAAACCAAAAATATCAGACTTTGGGATGGAGAGAATGTTTGGAGTTGACGATCAAACTGAAGGAAACACGAGAGGAATTGTCGTGGTTACATGA

Protein Analysis

179

Amino Acids

20.73

Weight (kDa)

9.13

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 44 - 169 1.5e-24 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 48 - 161 2.2e-23 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 405
AciI CCGC 1 cut(s) 105
AcsI RAATTY 2 cut(s) 28, 360
AcuI CTGAAG 2 cut(s) 170, 522
AfaI GTAC 1 cut(s) 147
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 4 cut(s) 124, 316, 384, 412
AluBI AGCT 5 cut(s) 132, 154, 184, 208, 353
AluI AGCT 5 cut(s) 132, 154, 184, 208, 353
Ama87I CYCGRG 1 cut(s) 354
ApoI RAATTY 2 cut(s) 28, 360
AsuHPI GGTGA 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 354
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
BauI CACGAG 1 cut(s) 511
BccI CCATC 1 cut(s) 463
BclI TGATCA 1 cut(s) 97
BfaI CTAG 1 cut(s) 200
BfrI CTTAAG 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 354
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bse3DI GCAATG 1 cut(s) 328
BseGI GGATG 1 cut(s) 474
BseMI GCAATG 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 354
BsoBI CYCGRG 1 cut(s) 354
Bsp1407I TGTACA 1 cut(s) 145
Bsp143I GATC 3 cut(s) 37, 97, 493
Bsp68I TCGCGA 1 cut(s) 405
BspACI CCGC 1 cut(s) 105
BspFNI CGCG 1 cut(s) 405
BspHI TCATGA 1 cut(s) 373
BspTI CTTAAG 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 328
BsrGI TGTACA 1 cut(s) 145
BssMI GATC 3 cut(s) 37, 97, 493
BssSI CACGAG 1 cut(s) 511
Bst2BI CACGAG 1 cut(s) 511
BstAFI CTTAAG 1 cut(s) 155
BstAUI TGTACA 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 389
BstF5I GGATG 1 cut(s) 474
BstFNI CGCG 1 cut(s) 405
BstKTI GATC 3 cut(s) 40, 100, 496
BstMBI GATC 3 cut(s) 37, 97, 493
BstUI CGCG 1 cut(s) 405
BtgZI GCGATG 1 cut(s) 386
BtsCI GGATG 1 cut(s) 474
BtuMI TCGCGA 1 cut(s) 405
CciI TCATGA 1 cut(s) 373
Csp6I GTAC 1 cut(s) 146
CviAII CATG 3 cut(s) 334, 374, 534
CviJI RGCY 7 cut(s) 132, 154, 179, 184, 208, 353, 388
CviKI_1 RGCY 7 cut(s) 132, 154, 179, 184, 208, 353, 388
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 1 cut(s) 389
DpnI GATC 3 cut(s) 39, 99, 495
DpnII GATC 3 cut(s) 37, 97, 493
EciI GGCGGA 1 cut(s) 120
Eco57I CTGAAG 2 cut(s) 170, 522
Eco88I CYCGRG 1 cut(s) 354
EcoRI GAATTC 1 cut(s) 360
FaeI CATG 3 cut(s) 337, 377, 537
FatI CATG 3 cut(s) 333, 373, 533
FbaI TGATCA 1 cut(s) 97
FokI GGATG 1 cut(s) 481
FspBI CTAG 1 cut(s) 200
Hin1II CATG 3 cut(s) 337, 377, 537
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HindIII AAGCTT 2 cut(s) 182, 206
HinfI GANTC 2 cut(s) 293, 380
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 2 cut(s) 146, 490
Hpy188I TCNGA 3 cut(s) 62, 82, 460
Hpy188III TCNNGA 4 cut(s) 124, 324, 374, 404
Hpy8I GTNNAC 2 cut(s) 146, 490
HpyAV CCTTC 2 cut(s) 221, 497
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 139, 333
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 3 cut(s) 337, 377, 537
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 3 cut(s) 37, 97, 493
LpnPI CCDG 1 cut(s) 197
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 529
MalI GATC 3 cut(s) 39, 99, 495
MboI GATC 3 cut(s) 37, 97, 493
MboII GAAGA 4 cut(s) 24, 245, 362, 389
MfeI CAATTG 1 cut(s) 311
MluCI AATT 8 cut(s) 23, 28, 68, 311, 316, 339, 360, 519
MnlI CCTC 3 cut(s) 338, 350, 509
MseI TTAA 3 cut(s) 26, 156, 438
MspCI CTTAAG 1 cut(s) 155
MunI CAATTG 1 cut(s) 311
MvnI CGCG 1 cut(s) 405
NdeII GATC 3 cut(s) 37, 97, 493
NlaIII CATG 3 cut(s) 337, 377, 537
NruI TCGCGA 1 cut(s) 405
PaeR7I CTCGAG 1 cut(s) 354
PagI TCATGA 1 cut(s) 373
PfeI GAWTC 2 cut(s) 293, 380
PspXI VCTCGAGB 1 cut(s) 354
RruI TCGCGA 1 cut(s) 405
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 3 cut(s) 26, 156, 438
Sau3AI GATC 3 cut(s) 37, 97, 493
SetI ASST 7 cut(s) 76, 134, 145, 156, 186, 210, 355
Sfr274I CTCGAG 1 cut(s) 354
SlaI CTCGAG 1 cut(s) 354
SmlI CTYRAG 2 cut(s) 155, 354
SmoI CTYRAG 2 cut(s) 155, 354
Sse9I AATT 8 cut(s) 23, 28, 68, 311, 316, 339, 360, 519
SsiI CCGC 1 cut(s) 105
SspMI CTAG 1 cut(s) 200
TaiI ACGT 1 cut(s) 76
TaqI TCGA 3 cut(s) 36, 296, 355
TasI AATT 8 cut(s) 23, 28, 68, 311, 316, 339, 360, 519
TatI WGTACW 1 cut(s) 145
TfiI GAWTC 2 cut(s) 293, 380
Tru1I TTAA 3 cut(s) 26, 156, 438
Tru9I TTAA 3 cut(s) 26, 156, 438
TspDTI ATGAA 6 cut(s) 177, 267, 306, 362, 390, 458
Vha464I CTTAAG 1 cut(s) 155
XapI RAATTY 2 cut(s) 28, 360
XhoI CTCGAG 1 cut(s) 354
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.