Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000283

Physical Location & Seq

Genomic Coordinates Forward (+)

1437798 .. 1443554

Gene Structure 5757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02772.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTTCGGGAAAAGCAAAATCTCCTGGAAAACGATTGTGGCAATTGTCGTGCCAATTGCGGTTTCTTTGGTGCTTTTTGTGATTGGCTACTGCCTCATTTGTAAGAGGGCAAGAAAGAAGTACAATGTTGTATCAGAACTAAATGGTGAAAATGACATTAGTAGTGCAGATTCTTTGCAATTTGATTTTGGTACCATTGGAGCCGCTACAAACAATTTCTCTGATGAGAATAAGTTAGGTGAAGGTGGATTTGGTCAAGTCTACAAGGGTTTGCTTTCAAATGGGCAAGAAATAGCTGTCAAGAGGCTATCAAGGAACTCTGGCCAGGGTACTGAAGAATTTAAGAATGAGATGGTACTGGTAGCCAAGCTGCAACACAGAAATCTAGTTAGGCTATTGGGATTTTGCTTGGAAGGGGAAGAAAAGATGCTTGTTTATGAATACGTCCCCAACAAAAGCCTCGACTATATTCTATTTGACCCTGAGAAACAAGGACAACTGGATTGGCCGAGACGTTACAAAATTATTGCAGGAATTGCCCGAGGAATTATGTATCTACATGAAGACTCCCGGCTGAGAATTATACATAGTGATCTCAAAGCCAGCAATATATTGTTAGATAGGGACATGCATCCAAAAATATCTGATTTTGGCATGGCCAGGATTTTTGGCGTTGACCAAACACAAGCAAACACAAATAGAATTGTTGGAACTTATGGTTACATGGCTCCAGAATATGCAATGCATGGACAATTTTCTGTCAAGTCCGATCTCTATAGTTTTGGTGTCTTGGTTCTTGAAATCATCAGTGGCAAGAAGAATAATTACTACTTCCAAACGGATGCAGCTGAGGACCTCGTCAGCCATGCTTGGAAACTATGGAGAGATGGAACACCTTTAGAATTGTTGGATCCGTGTCTGATAGATTCTTGTACTAGAAATGAAGTTATCAGATGTATCCACATTGGCTTACTTTGTGTTCAGGAAGATCCAGCTGACAGACCTACAATGCAATCACTAGTTCTCATGCTCAACAGCTACTCTGTTACTCTTCCATTACCTCAAGAGCCAGCATTTTTCCATAAGACTAGATCGGAGTTTATGCCAAAGATGCTGCTGGATCAGTCTATCAGCAAGTCAAGTCCATCAGTTTTTGATGGATCTATCACTGAAGTATATCCTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

396

Amino Acids

44.58

Weight (kDa)

6.47

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	74 - 340	6.9e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	76 - 342	1.2e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca	FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica	MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica	Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis	pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis	RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata	RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora	Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa	Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha	Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana	Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	2 cut(s)	59, 204
AclWI	GGATC	5 cut(s)	905, 918, 983, 1128, 1168
AcoI	YGGCCR	3 cut(s)	322, 506, 657
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	5 cut(s)	122, 193, 331, 357, 934
AgsI	TTSAA	2 cut(s)	279, 800
AhlI	ACTAGT	1 cut(s)	1018
AjnI	CCWGG	3 cut(s)	23, 324, 659
AjuI	GAANNNNNNNTTGG	4 cut(s)	46, 78, 234, 266
AluBI	AGCT	5 cut(s)	296, 370, 848, 995, 1038
AluI	AGCT	5 cut(s)	296, 370, 848, 995, 1038
Alw26I	GTCTC	1 cut(s)	505
AlwI	GGATC	5 cut(s)	905, 918, 983, 1128, 1168
Ama87I	CYCGRG	1 cut(s)	540
AoxI	GGCC	3 cut(s)	322, 506, 657
ApeKI	GCWGC	3 cut(s)	370, 845, 1114
ApoI	RAATTY	1 cut(s)	338
Asp718I	GGTACC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	853
AsuC2I	CCSGG	1 cut(s)	571
AsuHPI	GGTGA	2 cut(s)	158, 251
AvaI	CYCGRG	1 cut(s)	540
AvaII	GGWCC	1 cut(s)	853
BalI	TGGCCA	2 cut(s)	324, 659
BamHI	GGATCC	1 cut(s)	910
BanI	GGYRCC	1 cut(s)	191
BarI	GAAGNNNNNNTAC	2 cut(s)	809, 841
BbsI	GAAGAC	1 cut(s)	570
BbvCI	CCTCAGC	1 cut(s)	849
BbvI	GCAGC	3 cut(s)	357, 857, 1101
BccI	CCATC	4 cut(s)	346, 881, 1151, 1153
BciT130I	CCWGG	3 cut(s)	25, 326, 661
BciVI	GTATCC	1 cut(s)	968
BcnI	CCSGG	1 cut(s)	571
BcoDI	GTCTC	1 cut(s)	505
BcuI	ACTAGT	1 cut(s)	1018
BfaI	CTAG	4 cut(s)	386, 936, 1019, 1089
BfmI	CTRYAG	1 cut(s)	775
BfuI	GTATCC	1 cut(s)	968
BisI	GCNGC	4 cut(s)	204, 371, 846, 1115
BlsI	GCNGC	4 cut(s)	205, 372, 847, 1116
Bme1390I	CCNGG	4 cut(s)	25, 326, 571, 661
Bme18I	GGWCC	1 cut(s)	853
BmeT110I	CYCGRG	1 cut(s)	540
BmgT120I	GGNCC	1 cut(s)	853
BmiI	GGNNCC	4 cut(s)	193, 202, 729, 912
BmrFI	CCNGG	4 cut(s)	25, 326, 571, 661
BmsI	GCATC	4 cut(s)	417, 640, 832, 1101
BpiI	GAAGAC	1 cut(s)	570
BpmI	CTGGAG	1 cut(s)	714
Bpu10I	CCTNAGC	1 cut(s)	849
BpuEI	CTTGAG	1 cut(s)	1047
BpuMI	CCSGG	1 cut(s)	571
BsaJI	CCNNGG	2 cut(s)	325, 541
Bse1I	ACTGG	2 cut(s)	363, 504
Bse3DI	GCAATG	1 cut(s)	747
BseBI	CCWGG	3 cut(s)	25, 326, 661
BseDI	CCNNGG	2 cut(s)	325, 541
BseGI	GGATG	2 cut(s)	631, 847
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	3 cut(s)	474, 566, 840
BseNI	ACTGG	2 cut(s)	363, 504
BseXI	GCAGC	3 cut(s)	357, 857, 1101
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	324, 508, 659
BshNI	GGYRCC	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	540
BsiSI	CCGG	1 cut(s)	571
BslFI	GGGAC	2 cut(s)	431, 638
BsmAI	GTCTC	1 cut(s)	505
BsmBI	CGTCTC	1 cut(s)	505
BsmFI	GGGAC	2 cut(s)	431, 638
BsnI	GGCC	3 cut(s)	324, 508, 659
BsoBI	CYCGRG	1 cut(s)	540
Bsp143I	GATC	7 cut(s)	592, 769, 910, 988, 1091, 1120, 1160
BspACI	CCGC	2 cut(s)	59, 204
BspANI	GGCC	3 cut(s)	324, 508, 659
BspCNI	CTCAG	3 cut(s)	475, 567, 841
BspLI	GGNNCC	4 cut(s)	193, 202, 729, 912
BspPI	GGATC	5 cut(s)	905, 918, 983, 1128, 1168
BspT107I	GGYRCC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	747
BsrI	ACTGG	2 cut(s)	363, 504
BssECI	CCNNGG	2 cut(s)	325, 541
BssMI	GATC	7 cut(s)	592, 769, 910, 988, 1091, 1120, 1160
Bst2UI	CCWGG	3 cut(s)	25, 326, 661
Bst6I	CTCTTC	1 cut(s)	1056
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	604, 1071
BstDEI	CTNAG	3 cut(s)	483, 575, 849
BstF5I	GGATG	2 cut(s)	631, 847
BstKTI	GATC	7 cut(s)	595, 772, 913, 991, 1094, 1123, 1163
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	7 cut(s)	592, 769, 910, 988, 1091, 1120, 1160
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 1111
BstNI	CCWGG	3 cut(s)	25, 326, 661
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	4 cut(s)	23, 324, 569, 659
BstSFI	CTRYAG	1 cut(s)	775
BstV1I	GCAGC	3 cut(s)	357, 857, 1101
BstV2I	GAAGAC	1 cut(s)	570
BstX2I	RGATCY	3 cut(s)	910, 988, 1160
BstYI	RGATCY	3 cut(s)	910, 988, 1160
BsuI	GTATCC	1 cut(s)	968
BsuRI	GGCC	3 cut(s)	324, 508, 659
BtsCI	GGATG	2 cut(s)	631, 847
BtsIMutI	CAGTG	2 cut(s)	814, 1167
Cac8I	GCNNGC	2 cut(s)	604, 1071
Cfr13I	GGNCC	1 cut(s)	853
Csp6I	GTAC	5 cut(s)	121, 192, 330, 356, 933
CviAII	CATG	7 cut(s)	560, 628, 655, 724, 746, 866, 1027
CviQI	GTAC	5 cut(s)	121, 192, 330, 356, 933
DdeI	CTNAG	3 cut(s)	483, 575, 849
DpnI	GATC	7 cut(s)	594, 771, 912, 990, 1093, 1122, 1162
DpnII	GATC	7 cut(s)	592, 769, 910, 988, 1091, 1120, 1160
EaeI	YGGCCR	3 cut(s)	322, 506, 657
Eam1104I	CTCTTC	1 cut(s)	1056
EarI	CTCTTC	1 cut(s)	1056
Eco47I	GGWCC	1 cut(s)	853
Eco57I	CTGAAG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	540
EcoO109I	RGGNCCY	1 cut(s)	853
EcoRII	CCWGG	3 cut(s)	23, 324, 659
EcoT22I	ATGCAT	2 cut(s)	633, 747
Esp3I	CGTCTC	1 cut(s)	505
FaeI	CATG	7 cut(s)	563, 631, 658, 727, 749, 869, 1030
FaqI	GGGAC	2 cut(s)	431, 638
FatI	CATG	7 cut(s)	559, 627, 654, 723, 745, 865, 1026
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	4 cut(s)	204, 371, 846, 1115
FokI	GGATG	2 cut(s)	618, 854
Fsp4HI	GCNGC	4 cut(s)	204, 371, 846, 1115
FspBI	CTAG	4 cut(s)	386, 936, 1019, 1089
GluI	GCNGC	4 cut(s)	204, 371, 846, 1115
GsuI	CTGGAG	1 cut(s)	714
HaeIII	GGCC	3 cut(s)	324, 508, 659
HapII	CCGG	1 cut(s)	571
Hin1II	CATG	7 cut(s)	563, 631, 658, 727, 749, 869, 1030
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	3 cut(s)	170, 566, 926
HpaII	CCGG	1 cut(s)	571
HphI	GGTGA	2 cut(s)	158, 251
Hpy166II	GTNNAC	2 cut(s)	262, 676
Hpy188I	TCNGA	7 cut(s)	136, 223, 646, 769, 921, 953, 1096
Hpy188III	TCNNGA	6 cut(s)	7, 301, 731, 797, 983, 1064
Hpy8I	GTNNAC	2 cut(s)	262, 676
HpyAV	CCTTC	2 cut(s)	236, 407
HpyCH4IV	ACGT	2 cut(s)	444, 514
HpyCH4V	TGCA	9 cut(s)	167, 178, 373, 530, 631, 740, 745, 845, 1012
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 1111
HpyF3I	CTNAG	3 cut(s)	483, 575, 849
HpySE526I	ACGT	2 cut(s)	444, 514
Hsp92II	CATG	7 cut(s)	563, 631, 658, 727, 749, 869, 1030
KpnI	GGTACC	1 cut(s)	195
Kzo9I	GATC	7 cut(s)	592, 769, 910, 988, 1091, 1120, 1160
LmnI	GCTCC	2 cut(s)	200, 733
Lsp1109I	GCAGC	3 cut(s)	357, 857, 1101
LweI	GCATC	4 cut(s)	417, 640, 832, 1101
MaeI	CTAG	4 cut(s)	386, 936, 1019, 1089
MaeII	ACGT	2 cut(s)	444, 514
MaeIII	GTNAC	3 cut(s)	515, 719, 1045
MalI	GATC	7 cut(s)	594, 771, 912, 990, 1093, 1122, 1162
MboI	GATC	7 cut(s)	592, 769, 910, 988, 1091, 1120, 1160
MboII	GAAGA	6 cut(s)	347, 431, 575, 829, 998, 1043
MfeI	CAATTG	2 cut(s)	42, 54
MflI	RGATCY	3 cut(s)	910, 988, 1160
MlsI	TGGCCA	2 cut(s)	324, 659
MluNI	TGGCCA	2 cut(s)	324, 659
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	2 cut(s)	688, 888
MnlI	CCTC	8 cut(s)	99, 104, 297, 470, 536, 844, 866, 1071
Mox20I	TGGCCA	2 cut(s)	324, 659
Mph1103I	ATGCAT	2 cut(s)	633, 747
MscI	TGGCCA	2 cut(s)	324, 659
MseI	TTAA	1 cut(s)	342
Msp20I	TGGCCA	2 cut(s)	324, 659
MspA1I	CMGCKG	2 cut(s)	848, 995
MspI	CCGG	1 cut(s)	571
MspR9I	CCNGG	4 cut(s)	25, 326, 571, 661
MunI	CAATTG	2 cut(s)	42, 54
MvaI	CCWGG	3 cut(s)	25, 326, 661
MwoI	GCNNNNNNNGC	2 cut(s)	536, 1111
NciI	CCSGG	1 cut(s)	571
NdeII	GATC	7 cut(s)	592, 769, 910, 988, 1091, 1120, 1160
NlaIII	CATG	7 cut(s)	563, 631, 658, 727, 749, 869, 1030
NlaIV	GGNNCC	4 cut(s)	193, 202, 729, 912
NmeAIII	GCCGAG	1 cut(s)	534
NsiI	ATGCAT	2 cut(s)	633, 747
NspI	RCATGY	1 cut(s)	631
PfeI	GAWTC	2 cut(s)	170, 926
PflFI	GACNNNGTC	1 cut(s)	857
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	4 cut(s)	205, 372, 847, 1116
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PpuMI	RGGWCCY	1 cut(s)	853
Psp5II	RGGWCCY	1 cut(s)	853
Psp6I	CCWGG	3 cut(s)	23, 324, 659
PspGI	CCWGG	3 cut(s)	23, 324, 659
PspN4I	GGNNCC	4 cut(s)	193, 202, 729, 912
PspPI	GGNCC	1 cut(s)	853
PspPPI	RGGWCCY	1 cut(s)	853
PsuI	RGATCY	3 cut(s)	910, 988, 1160
PsyI	GACNNNGTC	1 cut(s)	857
PvuII	CAGCTG	2 cut(s)	848, 995
RsaI	GTAC	5 cut(s)	122, 193, 331, 357, 934
RsaNI	GTAC	5 cut(s)	121, 192, 330, 356, 933
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	4 cut(s)	204, 371, 846, 1115
Sau3AI	GATC	7 cut(s)	592, 769, 910, 988, 1091, 1120, 1160
Sau96I	GGNCC	1 cut(s)	853
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	4 cut(s)	25, 326, 571, 661
SfaNI	GCATC	4 cut(s)	417, 640, 832, 1101
SfcI	CTRYAG	1 cut(s)	775
SinI	GGWCC	1 cut(s)	853
SmlI	CTYRAG	1 cut(s)	1062
SmoI	CTYRAG	1 cut(s)	1062
SpeI	ACTAGT	1 cut(s)	1018
SsiI	CCGC	2 cut(s)	59, 204
SspMI	CTAG	4 cut(s)	386, 936, 1019, 1089
StyD4I	CCNGG	4 cut(s)	23, 324, 569, 659
TaiI	ACGT	2 cut(s)	447, 517
TaqI	TCGA	2 cut(s)	462, 1183
TatI	WGTACW	2 cut(s)	120, 932
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	170, 926
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	2 cut(s)	814, 1174
TseI	GCWGC	3 cut(s)	370, 845, 1114
TspDTI	ATGAA	3 cut(s)	453, 576, 957
TspGWI	ACGGA	2 cut(s)	854, 903
TspRI	CASTG	2 cut(s)	814, 1174
Tth111I	GACNNNGTC	1 cut(s)	857
VpaK11BI	GGWCC	1 cut(s)	853
XapI	RAATTY	1 cut(s)	338
XceI	RCATGY	1 cut(s)	631
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	4 cut(s)	386, 936, 1019, 1089
Zsp2I	ATGCAT	2 cut(s)	633, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.