Rmu_sc0007868.1_g000016

Cysteine-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007868.1
OG0000283
Physical Location & Seq
Forward (+)
56776 .. 57249
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007868.1_g000016.1.cds

Sequence Viewer

Length: 474 bp
atgattatcataaagtcttctaatctgttcacggcccttgtggtgctctccattcttggcttccttagcgttagcgttgaagctcaagcaccaacttaccggtatcatttctgttcaaacacaaccaatttcactcccaacggctcctaccagtctaatctcaatctcctcctctcttctctcacatccaacgccacacgtgatattggattttactacaccaccgcgggcgtgcaaggctccactgcagaagtagtttacggttctttcctatgccgtggagatctcacccccaagttgtgccaagaatgtgttactactgtagccaaagatgttgtccaactgtactgccccttgggaaaaatcgcaataatatggtacgacgaatgcatgttgcgctacgcaaaccagtcttacttgaacagacactacaacaaaattggctataggacaccatcagttaagggtgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

157

Amino Acids

17.41

Weight (kDa)

8.73

Isoelectric Point (pI)

29.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 227
AciI CCGC 2 cut(s) 225, 227
AcvI CACGTG 1 cut(s) 200
AfaI GTAC 2 cut(s) 347, 380
AflIII ACRYGT 1 cut(s) 197
AgeI ACCGGT 1 cut(s) 99
AgsI TTSAA 3 cut(s) 80, 117, 421
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw21I GWGCWC 1 cut(s) 48
AoxI GGCC 1 cut(s) 33
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
AsiGI ACCGGT 1 cut(s) 99
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 280
BbrPI CACGTG 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 48
BccI CCATC 1 cut(s) 463
BceAI ACGGC 3 cut(s) 48, 157, 261
BfmI CTRYAG 3 cut(s) 246, 321, 445
BglII AGATCT 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 2 cut(s) 145, 241
BpiI GAAGAC 1 cut(s) 9
Bpu10I CCTNAGC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 200
BsaJI CCNNGG 3 cut(s) 225, 277, 354
BsaWI WCCGGW 1 cut(s) 99
Bse118I RCCGGY 1 cut(s) 99
Bse1I ACTGG 2 cut(s) 151, 409
BseDI CCNNGG 3 cut(s) 225, 277, 354
BseGI GGATG 1 cut(s) 185
BseNI ACTGG 2 cut(s) 151, 409
BseRI GAGGAG 2 cut(s) 158, 161
Bsh1236I CGCG 1 cut(s) 227
BshFI GGCC 1 cut(s) 35
BshTI ACCGGT 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 100
BsmI GAATGC 1 cut(s) 392
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 2 cut(s) 225, 227
BspANI GGCC 1 cut(s) 35
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 2 cut(s) 145, 241
BspMAI CTGCAG 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 99
BsrI ACTGG 2 cut(s) 151, 409
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 3 cut(s) 225, 277, 354
BssMI GATC 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 354
Bst4CI ACNGT 3 cut(s) 263, 322, 345
Bst6I CTCTTC 1 cut(s) 181
BstBAI YACGTR 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 229, 233
BstDEI CTNAG 1 cut(s) 65
BstDSI CCRYGG 2 cut(s) 225, 277
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 227
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 1 cut(s) 286
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 3 cut(s) 66, 237, 396
BstNSI RCATGY 1 cut(s) 394
BstSFI CTRYAG 3 cut(s) 246, 321, 445
BstUI CGCG 1 cut(s) 227
BstV2I GAAGAC 1 cut(s) 9
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 35
BtgI CCRYGG 2 cut(s) 225, 277
BtsCI GGATG 1 cut(s) 185
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 229, 233
CfoI GCGC 1 cut(s) 399
Cfr10I RCCGGY 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 34
Cfr42I CCGCGG 1 cut(s) 228
Csp6I GTAC 2 cut(s) 346, 379
CspAI ACCGGT 1 cut(s) 99
CviAII CATG 1 cut(s) 391
CviJI RGCY 7 cut(s) 35, 60, 83, 144, 240, 326, 444
CviKI_1 RGCY 7 cut(s) 35, 60, 83, 144, 240, 326, 444
CviQI GTAC 2 cut(s) 346, 379
DdeI CTNAG 1 cut(s) 65
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 354
Eco72I CACGTG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 354
EcoT22I ATGCAT 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 1 cut(s) 394
FaiI YATR 5 cut(s) 11, 274, 376, 392, 447
FatI CATG 1 cut(s) 390
FauI CCCGC 1 cut(s) 220
FokI GGATG 1 cut(s) 172
GlaI GCGC 1 cut(s) 398
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 100
HhaI GCGC 1 cut(s) 399
Hin1II CATG 1 cut(s) 394
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HpaII CCGG 1 cut(s) 100
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 30, 259
Hpy8I GTNNAC 2 cut(s) 30, 259
Hpy99I CGWCG 1 cut(s) 386
HpyCH4III ACNGT 3 cut(s) 263, 322, 345
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 3 cut(s) 235, 248, 390
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 237, 396
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 1 cut(s) 394
HspAI GCGC 1 cut(s) 397
KspI CCGCGG 1 cut(s) 228
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 2 cut(s) 149, 245
LpnPI CCDG 3 cut(s) 113, 164, 422
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 1 cut(s) 313
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 2 cut(s) 9, 168
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 2 cut(s) 127, 438
MmeI TCCRAC 2 cut(s) 213, 364
MnlI CCTC 2 cut(s) 179, 182
Mph1103I ATGCAT 1 cut(s) 392
MseI TTAA 2 cut(s) 462, 472
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 392
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 3 cut(s) 66, 237, 396
NdeII GATC 1 cut(s) 283
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 2 cut(s) 145, 241
NsiI ATGCAT 1 cut(s) 392
NspI RCATGY 1 cut(s) 394
PctI GAATGC 1 cut(s) 392
PinAI ACCGGT 1 cut(s) 99
PmaCI CACGTG 1 cut(s) 200
PmlI CACGTG 1 cut(s) 200
Ppu21I YACGTR 1 cut(s) 200
PspCI CACGTG 1 cut(s) 200
PspN4I GGNNCC 2 cut(s) 145, 241
PspPI GGNCC 1 cut(s) 34
PsrI GAACNNNNNNTAC 2 cut(s) 413, 445
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 2 cut(s) 347, 380
RsaNI GTAC 2 cut(s) 346, 379
SacII CCGCGG 1 cut(s) 228
SaqAI TTAA 2 cut(s) 462, 472
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 1 cut(s) 34
SduI GDGCHC 1 cut(s) 48
SetI ASST 2 cut(s) 85, 202
SfcI CTRYAG 3 cut(s) 246, 321, 445
Sfr303I CCGCGG 1 cut(s) 228
SgrBI CCGCGG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 2 cut(s) 127, 438
SsiI CCGC 2 cut(s) 225, 227
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 3 cut(s) 263, 322, 345
TaiI ACGT 1 cut(s) 202
TasI AATT 2 cut(s) 127, 438
TatI WGTACW 1 cut(s) 345
Tru1I TTAA 2 cut(s) 462, 472
Tru9I TTAA 2 cut(s) 462, 472
TscAI CASTG 1 cut(s) 250
TspRI CASTG 1 cut(s) 250
XceI RCATGY 1 cut(s) 394
Zsp2I ATGCAT 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.