Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000283

Physical Location & Seq

Genomic Coordinates Forward (+)

57351846 .. 57353770

Gene Structure 1925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0410900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGGCAACAGTTTGGGAAGCAAAAAGAAAGCAAAGGTTCTGCAAATTAGTGGGGAGACATTGAAGTTGAAGACGCCGGTCCAAGCAGGTGAGGTAGTGAAGGACTACCCTGGTCACGTTTTGCTTAAATCCCAAGAGGTAAAGCATTTGGGGATCCGAGCAAAGCCTTTGGAGCCACACCAACACCTTGAGGCCAAGGGAGTCTACTTCCTTGTGGAGTTGCCAAAGGCTAGTAGTAATAGTGACAATCCAAAAGAGAGAGTTCCGAGGAGAGTCCGGTCCGGAATACACATGACTGCCAAGGACAGGCTTGAGAGTTTAATGCTGTCTCGGAGGTCGGTTTCCGACCTCTCCACCATGAAATCGATACCCGAGAAATCGCAAGATGGGCCGGTGCGCGTGAGGATGAGGCTTCCCAAGGCTCAAGTTGAGATGCTCATGCAGCAGAGCAGAGATGAGGAAGAGGCAGCAGAGAAGATTATGGATCTGTACATGGTTAATGCCAACATTGGTGGTGAGACCAATGAGAAGGATGGTCATGGAAGAGTGGTTAGACAAGGCACCAAGACGCGTGAGAAGCGAGTGAGCTTCCGACCGGTCGATGAAGGAGAAATACAAATAGCTGTGGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

211

Amino Acids

23.58

Weight (kDa)

9.77

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PADRE	PF14009	1 - 199	3.9e-20	PADRE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca	FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica	MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica	Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis	pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis	RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata	RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora	Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa	Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha	Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana	Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	560
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	2 cut(s)	399, 571
AccIII	TCCGGA	1 cut(s)	281
AclWI	GGATC	3 cut(s)	148, 161, 492
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	1 cut(s)	306
AflIII	ACRYGT	1 cut(s)	569
AgeI	ACCGGT	1 cut(s)	595
AgsI	TTSAA	2 cut(s)	64, 70
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	2 cut(s)	588, 623
AluI	AGCT	2 cut(s)	588, 623
Alw26I	GTCTC	3 cut(s)	50, 333, 512
AlwI	GGATC	3 cut(s)	148, 161, 492
Ama87I	CYCGRG	1 cut(s)	371
Aor13HI	TCCGGA	1 cut(s)	281
AoxI	GGCC	2 cut(s)	192, 389
ApeKI	GCWGC	2 cut(s)	442, 467
AsiGI	ACCGGT	1 cut(s)	595
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	3 cut(s)	79, 279, 389
AsuHPI	GGTGA	2 cut(s)	101, 527
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	79, 279
BamHI	GGATCC	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	560
BarI	GAAGNNNNNNTAC	2 cut(s)	597, 629
BbsI	GAAGAC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	454, 479
BccI	CCATC	2 cut(s)	380, 527
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	3 cut(s)	50, 333, 512
BfaI	CTAG	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	77
BisI	GCNGC	2 cut(s)	443, 468
BlsI	GCNGC	2 cut(s)	444, 469
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	2 cut(s)	79, 279
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	3 cut(s)	79, 279, 389
BmiI	GGNNCC	3 cut(s)	155, 174, 562
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	423
BoxI	GACNNNNGTC	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	77
BpuEI	CTTGAG	3 cut(s)	209, 332, 408
Bsa29I	ATCGAT	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	512
BsaJI	CCNNGG	5 cut(s)	109, 195, 266, 300, 417
BsaWI	WCCGGW	3 cut(s)	276, 281, 595
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse118I	RCCGGY	3 cut(s)	76, 391, 595
BseAI	TCCGGA	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	111
BseCI	ATCGAT	1 cut(s)	365
BseDI	CCNNGG	5 cut(s)	109, 195, 266, 300, 417
BseGI	GGATG	2 cut(s)	411, 538
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	454, 479
Bsh1236I	CGCG	2 cut(s)	399, 571
Bsh1285I	CGRYCG	2 cut(s)	596, 600
BshFI	GGCC	2 cut(s)	194, 391
BshNI	GGYRCC	1 cut(s)	560
BshTI	ACCGGT	1 cut(s)	595
BshVI	ATCGAT	1 cut(s)	365
BsiEI	CGRYCG	2 cut(s)	596, 600
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	5 cut(s)	77, 277, 282, 392, 596
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	3 cut(s)	50, 333, 512
BsnI	GGCC	2 cut(s)	194, 391
Bso31I	GGTCTC	1 cut(s)	512
BsoBI	CYCGRG	1 cut(s)	371
Bsp13I	TCCGGA	1 cut(s)	281
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	2 cut(s)	153, 484
BspANI	GGCC	2 cut(s)	194, 391
BspDI	ATCGAT	1 cut(s)	365
BspEI	TCCGGA	1 cut(s)	281
BspFNI	CGCG	2 cut(s)	399, 571
BspLI	GGNNCC	3 cut(s)	155, 174, 562
BspMI	ACCTGC	1 cut(s)	77
BspPI	GGATC	3 cut(s)	148, 161, 492
BspT107I	GGYRCC	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	512
BsrFI	RCCGGY	3 cut(s)	76, 391, 595
BsrGI	TGTACA	1 cut(s)	489
BssAI	RCCGGY	3 cut(s)	76, 391, 595
BssECI	CCNNGG	5 cut(s)	109, 195, 266, 300, 417
BssMI	GATC	2 cut(s)	153, 484
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	3 cut(s)	195, 300, 417
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	2 cut(s)	456, 538
BstACI	GRCGYC	1 cut(s)	74
BstAUI	TGTACA	1 cut(s)	489
BstF5I	GGATG	2 cut(s)	411, 538
BstFNI	CGCG	2 cut(s)	399, 571
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	2 cut(s)	156, 487
BstMAI	GTCTC	3 cut(s)	50, 333, 512
BstMBI	GATC	2 cut(s)	153, 484
BstMCI	CGRYCG	2 cut(s)	596, 600
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 388, 442, 577
BstNI	CCWGG	1 cut(s)	111
BstPAI	GACNNNNGTC	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	109
BstUI	CGCG	2 cut(s)	399, 571
BstV1I	GCAGC	2 cut(s)	454, 479
BstV2I	GAAGAC	1 cut(s)	77
BstX2I	RGATCY	2 cut(s)	153, 484
BstYI	RGATCY	2 cut(s)	153, 484
Bsu15I	ATCGAT	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	194, 391
BsuTUI	ATCGAT	1 cut(s)	365
BtsCI	GGATG	2 cut(s)	411, 538
BveI	ACCTGC	1 cut(s)	77
CfoI	GCGC	1 cut(s)	399
Cfr10I	RCCGGY	3 cut(s)	76, 391, 595
Cfr13I	GGNCC	3 cut(s)	79, 279, 389
ClaI	ATCGAT	1 cut(s)	365
CpoI	CGGWCCG	1 cut(s)	279
CseI	GACGC	2 cut(s)	82, 577
Csp6I	GTAC	1 cut(s)	490
CspAI	ACCGGT	1 cut(s)	595
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CspI	CGGWCCG	1 cut(s)	279
CviAII	CATG	5 cut(s)	292, 358, 439, 493, 539
CviQI	GTAC	1 cut(s)	490
DpnI	GATC	2 cut(s)	155, 486
DpnII	GATC	2 cut(s)	153, 484
Eam1104I	CTCTTC	2 cut(s)	456, 538
EarI	CTCTTC	2 cut(s)	456, 538
Eco130I	CCWWGG	3 cut(s)	195, 300, 417
Eco31I	GGTCTC	1 cut(s)	512
Eco47I	GGWCC	2 cut(s)	79, 279
Eco88I	CYCGRG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	3 cut(s)	195, 300, 417
ErhI	CCWWGG	3 cut(s)	195, 300, 417
FaeI	CATG	5 cut(s)	295, 361, 442, 496, 542
FaiI	YATR	6 cut(s)	293, 359, 440, 482, 494, 540
FatI	CATG	5 cut(s)	291, 357, 438, 492, 538
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	443, 468
FokI	GGATG	2 cut(s)	418, 545
Fsp4HI	GCNGC	2 cut(s)	443, 468
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	2 cut(s)	443, 468
HaeIII	GGCC	2 cut(s)	194, 391
HapII	CCGG	5 cut(s)	77, 277, 282, 392, 596
HgaI	GACGC	2 cut(s)	82, 577
HhaI	GCGC	1 cut(s)	399
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	5 cut(s)	295, 361, 442, 496, 542
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HinfI	GANTC	2 cut(s)	201, 273
HpaII	CCGG	5 cut(s)	77, 277, 282, 392, 596
HphI	GGTGA	2 cut(s)	101, 527
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	5 cut(s)	158, 267, 333, 346, 593
Hpy188III	TCNNGA	1 cut(s)	282
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	3 cut(s)	94, 523, 599
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	43, 442
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 388, 442, 577
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	5 cut(s)	295, 361, 442, 496, 542
HspAI	GCGC	1 cut(s)	397
Kpn2I	TCCGGA	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	153, 484
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	9 cut(s)	72, 90, 96, 123, 290, 292, 295, 405, 609
Lsp1109I	GCAGC	2 cut(s)	454, 479
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	113, 242
MalI	GATC	2 cut(s)	155, 486
MboI	GATC	2 cut(s)	153, 484
MboII	GAAGA	4 cut(s)	82, 473, 487, 555
MflI	RGATCY	2 cut(s)	153, 484
MluCI	AATT	1 cut(s)	45
MluI	ACGCGT	1 cut(s)	569
MlyI	GAGTC	2 cut(s)	210, 282
MmeI	TCCRAC	2 cut(s)	369, 616
MroI	TCCGGA	1 cut(s)	281
MseI	TTAA	4 cut(s)	126, 320, 498, 634
MspI	CCGG	5 cut(s)	77, 277, 282, 392, 596
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	2 cut(s)	399, 571
MwoI	GCNNNNNNNGC	4 cut(s)	172, 388, 442, 577
NdeII	GATC	2 cut(s)	153, 484
NlaIII	CATG	5 cut(s)	295, 361, 442, 496, 542
NlaIV	GGNNCC	3 cut(s)	155, 174, 562
NmuCI	GTSAC	2 cut(s)	113, 242
PaqCI	CACCTGC	1 cut(s)	77
PinAI	ACCGGT	1 cut(s)	595
PkrI	GCNGC	2 cut(s)	444, 469
PleI	GAGTC	2 cut(s)	209, 281
PpsI	GAGTC	2 cut(s)	209, 281
PshAI	GACNNNNGTC	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	3 cut(s)	155, 174, 562
PspPI	GGNCC	3 cut(s)	79, 279, 389
PsuI	RGATCY	2 cut(s)	153, 484
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
Rsr2I	CGGWCCG	1 cut(s)	279
RsrII	CGGWCCG	1 cut(s)	279
SaqAI	TTAA	4 cut(s)	126, 320, 498, 634
SatI	GCNGC	2 cut(s)	443, 468
Sau3AI	GATC	2 cut(s)	153, 484
Sau96I	GGNCC	3 cut(s)	79, 279, 389
SchI	GAGTC	2 cut(s)	210, 282
ScrFI	CCNGG	1 cut(s)	111
SfaNI	GCATC	1 cut(s)	423
SinI	GGWCC	2 cut(s)	79, 279
SmlI	CTYRAG	3 cut(s)	188, 311, 423
SmoI	CTYRAG	3 cut(s)	188, 311, 423
Sse9I	AATT	1 cut(s)	45
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	3 cut(s)	195, 300, 417
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	365, 600
TasI	AATT	1 cut(s)	45
TatI	WGTACW	1 cut(s)	489
Tru1I	TTAA	4 cut(s)	126, 320, 498, 634
Tru9I	TTAA	4 cut(s)	126, 320, 498, 634
TseFI	GTSAC	2 cut(s)	113, 242
TseI	GCWGC	2 cut(s)	442, 467
Tsp45I	GTSAC	2 cut(s)	113, 242
TspDTI	ATGAA	2 cut(s)	374, 618
VpaK11BI	GGWCC	2 cut(s)	79, 279
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.