Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000283

Physical Location & Seq

Genomic Coordinates Reverse (-)

92285487 .. 92291420

Gene Structure 5934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1980 bp

ATGGCAGAAGTGATCCTTCTCTTCCTTTTAATGGTCACCCTGCTAAGCTTTCCGACTACGGAAGCCGTCTACCTCTACCATATCTGCCCCAACACCACCGTCTTCACCCCAAACTCCACCTTCCAGTCCAACCTCAACCACCTCTTCTCCACTCTCTCCTCCAACGCCACACGCGACACCGGCTTCTACAACGCCACCTCCGGCCGTACCCCTAACGAAACCGTCTACGGCCTCTTCCTCTGCCGCGGTGACGTCACCACAGCCGCTTGCAAGTCCTGCGTGACCACCGCAACCTCCGAGGTCGTGCAGCGCTGCCCGGTCGAGAAAGAGGTTGTGATATGGTACGACGACTGCTTGCTCCGCTACTCCAACAACTCCTTCTTCTCTGTCGCCGCCGAGTCCCCGAGGGTGTTCATGTGGAACACCCAAAACGTCAGCAGCGAAACGAACCGGTTCAACCAGGTTTTGGCTGCGAGCATGACGGAGGTGGCCACGGAGGCTTCGAACGACGGCGATAAGTTTGCGACGAGGGAGGCGAACTTCACGGGGTTGATTAGCTTGTACAGCTTGGGGCAATGCACGCAGGACTTGTCTAGTTTTGATTGCAATCGGTGTCTTAGGGGAGCCATAGCGAATTTGCCGACTTGCTGCGGTGGGAAGTTAGGGGGACGAGTTCTGTATCCGAGTTGTTATGTTCGATATGAAGTTTATCCCTTTTATAACTCTACGTCAGCACCGGCGCCGGCGCCGGCGCCACGGGCTCGGCCTCTTTCTCCGCCGAGCTCAGTGAGTAAAGGGAAGAGCAAAATCTCCTGGAAAAAGATTGTGGCCATTGCTGTTCCAATTGCAGCCTCTTTGGTGCTTTTTGTGATCGCCTACTGCCTCATTACTAAGAGGGCAAAAAAGAAGTACAATGCAGTAGCAGAAACAAGTGAGAATGACATTTCTAGGGTAGAGTCTTTGCAATTTGATTTTGGTACCATTGAAGCTGCTACAAACAATTTCTCTGATGATAACAAGTTAGGCGAAGGTGGATTTGGTCAAGTCTACAAGGGTTTGCTTTCTGATGGTCAAGAAATAGCTGTCAAGAGGCTATCAAGGAACTCTGGCCAAGGTGCACAAGAATTTAAGAATGAGATGGTACTGGTAGCCAAGCTTCAACACCGAAATCTGGTCAGGCTATTGGGATTTTGCTTGGAAGGGGAAGAAAAGATGCTTGTTTATGAATACGTCCCCAACAAAAGCCTCGACTATATTCTATTTGACCCTGAGAAACAAGGACAACTGGATTGGTCGAGACGTTACAAAATTATTGCGGGGATTGCCCGAGGAATTATGTATCTACATGAAGACTCCCGGCTAAGAATTATACATCGTGATCTTAAAGCCAGCAATATATTGTTAGATGGGGAAATGCATCCAAAAATATCTGATTTTGGCATGGCGAGGATTTTCGGTGTTGATCAAACTCAAGCAAACACAAATAGAATTGTTGGAACATATGGTTACATGTCTCCAGAATATGCAATGCATGGACAATTTTCTATCAAGTCCGATATCTATAGTTTTGGTGTCTTAGTTCTAGAAATTATCAGTGGCAAGAAGAATAGTTACTTCTTCCAAACAGATGCAGCTGAGGACCTCGTGAGCCATGCTTGGAAACTATGGAGAGATGGAACTCCTTTGGAATTTTTGGATCCGTGTCTGAGAGATTCTTATTCTAGAAATGAAGTTATCAGATGTATCCACATTGGCTTACTTTGTGTTCAGGAAGATCCGGCTGACAGACCTACAATGCAATCACTAGTTCTTATGCTCAACAGCTACTCTGTTACTCTACCATTACCTCAAGAGCCAGCATTTGTCCATAGGACTAGATCGGAGTTCATGCCAAAGATACCGCTGGAGTATGATCAGTCTATCAGCAAGTCAAGTCCATCGGTTTATGAAGGATCAATCACTGAAGTATATCCTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

659

Amino Acids

73.64

Weight (kDa)

6.58

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	29 - 124	1.5e-28	Salt stress response/antifungal
Stress-antifung	PF01657	144 - 236	2.4e-11	Salt stress response/antifungal
Pkinase	PF00069	336 - 603	5e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	338 - 604	1.1e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca	FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica	MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica	Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis	pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis	RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata	RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora	Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa	Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha	Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana	Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	720
AatII	GACGTC	1 cut(s)	255
Acc65I	GGTACC	1 cut(s)	977
AccB1I	GGYRCC	4 cut(s)	739, 745, 751, 977
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccI	GTMKAC	3 cut(s)	69, 225, 1047
AccII	CGCG	2 cut(s)	174, 246
AclWI	GGATC	5 cut(s)	7, 1691, 1704, 1769, 1960
AcoI	YGGCCR	4 cut(s)	202, 489, 828, 1108
AcsI	RAATTY	3 cut(s)	634, 1124, 1688
AcyI	GRCGYC	4 cut(s)	252, 740, 746, 752
AfaI	GTAC	6 cut(s)	208, 344, 563, 911, 979, 1143
AfeI	AGCGCT	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	31, 466, 1171
AflIII	ACRYGT	1 cut(s)	1509
AgeI	ACCGGT	1 cut(s)	450
AgsI	TTSAA	3 cut(s)	457, 986, 1160
AhlI	ACTAGT	1 cut(s)	1804
AjnI	CCWGG	2 cut(s)	459, 812
AjuI	GAANNNNNNNTTGG	4 cut(s)	362, 394, 1020, 1052
AluBI	AGCT	9 cut(s)	48, 558, 567, 783, 989, 1082, 1156, 1634, 1824
AluI	AGCT	9 cut(s)	48, 558, 567, 783, 989, 1082, 1156, 1634, 1824
Alw21I	GWGCWC	2 cut(s)	785, 1120
Alw26I	GTCTC	2 cut(s)	1291, 1518
Alw44I	GTGCAC	1 cut(s)	1116
AlwI	GGATC	5 cut(s)	7, 1691, 1704, 1769, 1960
Ama87I	CYCGRG	2 cut(s)	403, 1326
Aor51HI	AGCGCT	1 cut(s)	311
AoxI	GGCC	6 cut(s)	202, 229, 489, 764, 828, 1108
ApaLI	GTGCAC	1 cut(s)	1116
ApeKI	GCWGC	8 cut(s)	307, 312, 438, 470, 648, 848, 989, 1631
ApoI	RAATTY	3 cut(s)	634, 1124, 1688
AsiGI	ACCGGT	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	452
Asp718I	GGTACC	1 cut(s)	977
AspLEI	GCGC	4 cut(s)	312, 742, 748, 754
AspS9I	GGNCC	1 cut(s)	1639
AsuC2I	CCSGG	2 cut(s)	317, 1357
AsuHPI	GGTGA	4 cut(s)	28, 97, 247, 260
AsuII	TTCGAA	1 cut(s)	503
AvaI	CYCGRG	2 cut(s)	403, 1326
AvaII	GGWCC	1 cut(s)	1639
BaeGI	GKGCMC	1 cut(s)	1120
BalI	TGGCCA	3 cut(s)	491, 830, 1110
BamHI	GGATCC	1 cut(s)	1696
BanI	GGYRCC	4 cut(s)	739, 745, 751, 977
BanII	GRGCYC	2 cut(s)	763, 785
BarI	GAAGNNNNNNTAC	4 cut(s)	1140, 1172, 1595, 1627
BauI	CACGAG	1 cut(s)	1643
BbsI	GAAGAC	2 cut(s)	94, 1356
Bbv12I	GWGCWC	2 cut(s)	785, 1120
BbvCI	CCTCAGC	1 cut(s)	1635
BbvI	GCAGC	8 cut(s)	299, 319, 450, 457, 635, 860, 976, 1643
BccI	CCATC	5 cut(s)	1061, 1132, 1400, 1667, 1945
BceAI	ACGGC	4 cut(s)	50, 189, 244, 526
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciT130I	CCWGG	2 cut(s)	461, 814
BciVI	GTATCC	2 cut(s)	690, 1754
BclI	TGATCA	2 cut(s)	1462, 1912
BcnI	CCSGG	2 cut(s)	317, 1357
BcoDI	GTCTC	2 cut(s)	1291, 1518
BcuI	ACTAGT	1 cut(s)	1804
BfaI	CTAG	6 cut(s)	594, 948, 1583, 1722, 1805, 1875
BfmI	CTRYAG	1 cut(s)	1561
BfoI	RGCGCY	4 cut(s)	313, 743, 749, 755
BfuI	GTATCC	2 cut(s)	690, 1754
BglI	GCCNNNNNGGC	1 cut(s)	497
BlpI	GCTNAGC	1 cut(s)	44
Bme1390I	CCNGG	4 cut(s)	317, 461, 814, 1357
Bme18I	GGWCC	1 cut(s)	1639
BmeT110I	CYCGRG	2 cut(s)	403, 1326
BmgT120I	GGNCC	1 cut(s)	1639
BmiI	GGNNCC	6 cut(s)	625, 741, 747, 753, 979, 1698
BmrFI	CCNGG	4 cut(s)	317, 461, 814, 1357
BmsI	GCATC	3 cut(s)	1203, 1426, 1618
BpiI	GAAGAC	2 cut(s)	94, 1356
BpmI	CTGGAG	2 cut(s)	1500, 1925
Bpu10I	CCTNAGC	1 cut(s)	1635
Bpu1102I	GCTNAGC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	503
BpuEI	CTTGAG	2 cut(s)	1455, 1833
BpuMI	CCSGG	2 cut(s)	317, 1357
BsaBI	GATNNNNATC	1 cut(s)	606
BsaHI	GRCGYC	4 cut(s)	252, 740, 746, 752
BsaJI	CCNNGG	7 cut(s)	244, 297, 404, 492, 755, 1111, 1327
BsaWI	WCCGGW	1 cut(s)	450
BsaXI	ACNNNNNCTCC	4 cut(s)	131, 161, 182, 212
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 466, 1171
Bse118I	RCCGGY	5 cut(s)	179, 450, 736, 742, 748
Bse1I	ACTGG	3 cut(s)	124, 1149, 1290
Bse3DI	GCAATG	3 cut(s)	581, 831, 1533
Bse8I	GATNNNNATC	1 cut(s)	606
BseBI	CCWGG	2 cut(s)	461, 814
BseDI	CCNNGG	7 cut(s)	244, 297, 404, 492, 755, 1111, 1327
BseGI	GGATG	1 cut(s)	1417
BseJI	GATNNNNATC	1 cut(s)	606
BseLI	CCNNNNNNNGG	3 cut(s)	31, 466, 1171
BseMI	GCAATG	3 cut(s)	581, 831, 1533
BseMII	CTCAG	4 cut(s)	798, 1260, 1626, 1697
BseNI	ACTGG	3 cut(s)	124, 1149, 1290
BseRI	GAGGAG	1 cut(s)	148
BseSI	GKGCMC	1 cut(s)	1120
BseX3I	CGGCCG	1 cut(s)	202
BseXI	GCAGC	8 cut(s)	299, 319, 450, 457, 635, 860, 976, 1643
BsgI	GTGCAG	1 cut(s)	326
Bsh1236I	CGCG	2 cut(s)	174, 246
Bsh1285I	CGRYCG	2 cut(s)	205, 321
BshFI	GGCC	6 cut(s)	204, 231, 491, 766, 830, 1110
BshNI	GGYRCC	4 cut(s)	739, 745, 751, 977
BshTI	ACCGGT	1 cut(s)	450
BsiEI	CGRYCG	2 cut(s)	205, 321
BsiHKAI	GWGCWC	2 cut(s)	785, 1120
BsiHKCI	CYCGRG	2 cut(s)	403, 1326
BsiSI	CCGG	9 cut(s)	180, 201, 317, 451, 737, 743, 749, 1357, 1778
BslFI	GGGAC	3 cut(s)	385, 681, 1217
BslI	CCNNNNNNNGG	3 cut(s)	31, 466, 1171
BsmAI	GTCTC	2 cut(s)	1291, 1518
BsmBI	CGTCTC	1 cut(s)	1291
BsmFI	GGGAC	3 cut(s)	385, 681, 1217
BsnI	GGCC	6 cut(s)	204, 231, 491, 766, 830, 1110
BsoBI	CYCGRG	2 cut(s)	403, 1326
Bsp119I	TTCGAA	1 cut(s)	503
Bsp1286I	GDGCHC	3 cut(s)	763, 785, 1120
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	9 cut(s)	12, 870, 1378, 1462, 1696, 1774, 1877, 1912, 1952
Bsp1720I	GCTNAGC	1 cut(s)	44
BspANI	GGCC	6 cut(s)	204, 231, 491, 766, 830, 1110
BspCNI	CTCAG	4 cut(s)	797, 1261, 1627, 1698
BspFNI	CGCG	2 cut(s)	174, 246
BspLI	GGNNCC	6 cut(s)	625, 741, 747, 753, 979, 1698
BspPI	GGATC	5 cut(s)	7, 1691, 1704, 1769, 1960
BspQI	GCTCTTC	1 cut(s)	794
BspT104I	TTCGAA	1 cut(s)	503
BspT107I	GGYRCC	4 cut(s)	739, 745, 751, 977
BsrDI	GCAATG	3 cut(s)	581, 831, 1533
BsrFI	RCCGGY	5 cut(s)	179, 450, 736, 742, 748
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	3 cut(s)	124, 1149, 1290
BssAI	RCCGGY	5 cut(s)	179, 450, 736, 742, 748
BssECI	CCNNGG	7 cut(s)	244, 297, 404, 492, 755, 1111, 1327
BssMI	GATC	9 cut(s)	12, 870, 1378, 1462, 1696, 1774, 1877, 1912, 1952
BssNI	GRCGYC	4 cut(s)	252, 740, 746, 752
BssSI	CACGAG	1 cut(s)	1643
BssT1I	CCWWGG	1 cut(s)	1111
Bst2BI	CACGAG	1 cut(s)	1643
Bst2UI	CCWGG	2 cut(s)	461, 814
Bst4CI	ACNGT	2 cut(s)	100, 223
Bst6I	CTCTTC	4 cut(s)	26, 149, 239, 794
BstACI	GRCGYC	4 cut(s)	252, 740, 746, 752
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstAUI	TGTACA	1 cut(s)	561
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	8 cut(s)	268, 356, 475, 581, 744, 750, 1390, 1857
BstDEI	CTNAG	9 cut(s)	44, 617, 784, 891, 1269, 1361, 1576, 1635, 1706
BstDSI	CCRYGG	3 cut(s)	244, 492, 755
BstEII	GGTNACC	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	1417
BstFNI	CGCG	2 cut(s)	174, 246
BstH2I	RGCGCY	4 cut(s)	313, 743, 749, 755
BstHHI	GCGC	4 cut(s)	312, 742, 748, 754
BstKTI	GATC	9 cut(s)	15, 873, 1381, 1465, 1699, 1777, 1880, 1915, 1955
BstMAI	GTCTC	2 cut(s)	1291, 1518
BstMBI	GATC	9 cut(s)	12, 870, 1378, 1462, 1696, 1774, 1877, 1912, 1952
BstMCI	CGRYCG	2 cut(s)	205, 321
BstMWI	GCNNNNNNNGC	8 cut(s)	180, 276, 360, 497, 564, 580, 758, 1322
BstNI	CCWGG	2 cut(s)	461, 814
BstNSI	RCATGY	1 cut(s)	1513
BstPI	GGTNACC	1 cut(s)	34
BstSCI	CCNGG	4 cut(s)	315, 459, 812, 1355
BstSFI	CTRYAG	1 cut(s)	1561
BstSLI	GKGCMC	1 cut(s)	1120
BstUI	CGCG	2 cut(s)	174, 246
BstV1I	GCAGC	8 cut(s)	299, 319, 450, 457, 635, 860, 976, 1643
BstV2I	GAAGAC	2 cut(s)	94, 1356
BstX2I	RGATCY	2 cut(s)	1696, 1774
BstYI	RGATCY	2 cut(s)	1696, 1774
BstZI	CGGCCG	1 cut(s)	202
BsuI	GTATCC	2 cut(s)	690, 1754
BsuRI	GGCC	6 cut(s)	204, 231, 491, 766, 830, 1110
BtgI	CCRYGG	3 cut(s)	244, 492, 755
BtsCI	GGATG	1 cut(s)	1417
BtsIMutI	CAGTG	3 cut(s)	792, 1600, 1959
Cac8I	GCNNGC	8 cut(s)	268, 356, 475, 581, 744, 750, 1390, 1857
CfoI	GCGC	4 cut(s)	312, 742, 748, 754
Cfr10I	RCCGGY	5 cut(s)	179, 450, 736, 742, 748
Cfr13I	GGNCC	1 cut(s)	1639
Cfr42I	CCGCGG	1 cut(s)	247
CsiI	ACCWGGT	1 cut(s)	459
Csp6I	GTAC	6 cut(s)	207, 343, 562, 910, 978, 1142
CspAI	ACCGGT	1 cut(s)	450
CviAII	CATG	8 cut(s)	415, 478, 1346, 1441, 1510, 1532, 1652, 1888
CviQI	GTAC	6 cut(s)	207, 343, 562, 910, 978, 1142
DdeI	CTNAG	9 cut(s)	44, 617, 784, 891, 1269, 1361, 1576, 1635, 1706
DinI	GGCGCC	3 cut(s)	741, 747, 753
DpnI	GATC	9 cut(s)	14, 872, 1380, 1464, 1698, 1776, 1879, 1914, 1954
DpnII	GATC	9 cut(s)	12, 870, 1378, 1462, 1696, 1774, 1877, 1912, 1952
EaeI	YGGCCR	4 cut(s)	202, 489, 828, 1108
EagI	CGGCCG	1 cut(s)	202
Eam1104I	CTCTTC	4 cut(s)	26, 149, 239, 794
EarI	CTCTTC	4 cut(s)	26, 149, 239, 794
EciI	GGCGGA	1 cut(s)	765
Ecl136II	GAGCTC	1 cut(s)	783
EclXI	CGGCCG	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	1111
Eco24I	GRGCYC	2 cut(s)	763, 785
Eco32I	GATATC	1 cut(s)	1558
Eco47I	GGWCC	1 cut(s)	1639
Eco47III	AGCGCT	1 cut(s)	311
Eco52I	CGGCCG	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	783
Eco88I	CYCGRG	2 cut(s)	403, 1326
Eco91I	GGTNACC	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	783
EcoO109I	RGGNCCY	1 cut(s)	1639
EcoO65I	GGTNACC	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	459, 812
EcoRV	GATATC	1 cut(s)	1558
EcoT14I	CCWWGG	1 cut(s)	1111
EcoT22I	ATGCAT	2 cut(s)	1419, 1533
EcoT38I	GRGCYC	2 cut(s)	763, 785
EgeI	GGCGCC	3 cut(s)	741, 747, 753
EheI	GGCGCC	3 cut(s)	741, 747, 753
ErhI	CCWWGG	1 cut(s)	1111
Esp3I	CGTCTC	1 cut(s)	1291
FaeI	CATG	8 cut(s)	418, 481, 1349, 1444, 1513, 1535, 1655, 1891
FalI	AAGNNNNNCTT	1 cut(s)	32
FaqI	GGGAC	3 cut(s)	385, 681, 1217
FatI	CATG	8 cut(s)	414, 477, 1345, 1440, 1509, 1531, 1651, 1887
FauI	CCCGC	1 cut(s)	1309
FauNDI	CATATG	1 cut(s)	1501
FbaI	TGATCA	2 cut(s)	1462, 1912
FblI	GTMKAC	3 cut(s)	69, 225, 1047
FokI	GGATG	1 cut(s)	1404
FriOI	GRGCYC	2 cut(s)	763, 785
FspBI	CTAG	6 cut(s)	594, 948, 1583, 1722, 1805, 1875
GlaI	GCGC	4 cut(s)	311, 741, 747, 753
GsuI	CTGGAG	2 cut(s)	1500, 1925
HaeII	RGCGCY	4 cut(s)	313, 743, 749, 755
HaeIII	GGCC	6 cut(s)	204, 231, 491, 766, 830, 1110
HapII	CCGG	9 cut(s)	180, 201, 317, 451, 737, 743, 749, 1357, 1778
HhaI	GCGC	4 cut(s)	312, 742, 748, 754
Hin1I	GRCGYC	4 cut(s)	252, 740, 746, 752
Hin1II	CATG	8 cut(s)	418, 481, 1349, 1444, 1513, 1535, 1655, 1891
Hin6I	GCGC	4 cut(s)	310, 740, 746, 752
HinP1I	GCGC	4 cut(s)	310, 740, 746, 752
HindIII	AAGCTT	2 cut(s)	46, 1154
HinfI	GANTC	4 cut(s)	398, 956, 1352, 1712
HpaII	CCGG	9 cut(s)	180, 201, 317, 451, 737, 743, 749, 1357, 1778
HphI	GGTGA	4 cut(s)	28, 97, 247, 260
Hpy166II	GTNNAC	4 cut(s)	70, 226, 1048, 1118
Hpy8I	GTNNAC	4 cut(s)	70, 226, 1048, 1118
Hpy99I	CGWCG	3 cut(s)	350, 512, 529
HpyAV	CCTTC	6 cut(s)	26, 130, 388, 1022, 1193, 1943
HpyCH4III	ACNGT	2 cut(s)	100, 223
HpyCH4IV	ACGT	5 cut(s)	252, 432, 728, 1230, 1300
HpyF10VI	GCNNNNNNNGC	8 cut(s)	180, 276, 360, 497, 564, 580, 758, 1322
HpyF3I	CTNAG	9 cut(s)	44, 617, 784, 891, 1269, 1361, 1576, 1635, 1706
HpySE526I	ACGT	5 cut(s)	252, 432, 728, 1230, 1300
Hsp92I	GRCGYC	4 cut(s)	252, 740, 746, 752
Hsp92II	CATG	8 cut(s)	418, 481, 1349, 1444, 1513, 1535, 1655, 1891
HspAI	GCGC	4 cut(s)	310, 740, 746, 752
KasI	GGCGCC	3 cut(s)	739, 745, 751
KpnI	GGTACC	1 cut(s)	981
KroI	GCCGGC	2 cut(s)	742, 748
KroNI	GCCGGC	2 cut(s)	744, 750
Ksp22I	TGATCA	2 cut(s)	1462, 1912
KspI	CCGCGG	1 cut(s)	247
Kzo9I	GATC	9 cut(s)	12, 870, 1378, 1462, 1696, 1774, 1877, 1912, 1952
LguI	GCTCTTC	1 cut(s)	794
LmnI	GCTCC	2 cut(s)	363, 623
Lsp1109I	GCAGC	8 cut(s)	299, 319, 450, 457, 635, 860, 976, 1643
LweI	GCATC	3 cut(s)	1203, 1426, 1618
MabI	ACCWGGT	1 cut(s)	459
MaeI	CTAG	6 cut(s)	594, 948, 1583, 1722, 1805, 1875
MaeII	ACGT	5 cut(s)	252, 432, 728, 1230, 1300
MaeIII	GTNAC	8 cut(s)	34, 248, 253, 280, 1301, 1505, 1610, 1831
MalI	GATC	9 cut(s)	14, 872, 1380, 1464, 1698, 1776, 1879, 1914, 1954
MboI	GATC	9 cut(s)	12, 870, 1378, 1462, 1696, 1774, 1877, 1912, 1952
MfeI	CAATTG	1 cut(s)	843
MflI	RGATCY	2 cut(s)	1696, 1774
MhlI	GDGCHC	3 cut(s)	763, 785, 1120
MlsI	TGGCCA	3 cut(s)	491, 830, 1110
MluNI	TGGCCA	3 cut(s)	491, 830, 1110
Mly113I	GGCGCC	3 cut(s)	740, 746, 752
MlyI	GAGTC	3 cut(s)	407, 965, 1346
MmeI	TCCRAC	5 cut(s)	77, 153, 186, 393, 1474
Mox20I	TGGCCA	3 cut(s)	491, 830, 1110
Mph1103I	ATGCAT	2 cut(s)	1419, 1533
MreI	CGCCGGCG	2 cut(s)	742, 748
MroNI	GCCGGC	2 cut(s)	742, 748
MroXI	GAANNNNTTC	1 cut(s)	452
MscI	TGGCCA	3 cut(s)	491, 830, 1110
MseI	TTAA	3 cut(s)	29, 1128, 1383
Msp20I	TGGCCA	3 cut(s)	491, 830, 1110
MspA1I	CMGCKG	3 cut(s)	246, 1634, 1903
MspI	CCGG	9 cut(s)	180, 201, 317, 451, 737, 743, 749, 1357, 1778
MspR9I	CCNGG	4 cut(s)	317, 461, 814, 1357
MunI	CAATTG	1 cut(s)	843
MvaI	CCWGG	2 cut(s)	461, 814
MvnI	CGCG	2 cut(s)	174, 246
MwoI	GCNNNNNNNGC	8 cut(s)	180, 276, 360, 497, 564, 580, 758, 1322
NaeI	GCCGGC	2 cut(s)	744, 750
NarI	GGCGCC	3 cut(s)	740, 746, 752
NciI	CCSGG	2 cut(s)	317, 1357
NdeI	CATATG	1 cut(s)	1501
NdeII	GATC	9 cut(s)	12, 870, 1378, 1462, 1696, 1774, 1877, 1912, 1952
NgoMIV	GCCGGC	2 cut(s)	742, 748
NlaIII	CATG	8 cut(s)	418, 481, 1349, 1444, 1513, 1535, 1655, 1891
NlaIV	GGNNCC	6 cut(s)	625, 741, 747, 753, 979, 1698
NmeAIII	GCCGAG	3 cut(s)	421, 742, 804
NmuCI	GTSAC	4 cut(s)	34, 248, 253, 280
NsiI	ATGCAT	2 cut(s)	1419, 1533
NspI	RCATGY	1 cut(s)	1513
NspV	TTCGAA	1 cut(s)	503
PciI	ACATGT	1 cut(s)	1509
PciSI	GCTCTTC	1 cut(s)	794
PcsI	WCGNNNNNNNCGW	4 cut(s)	171, 438, 500, 533
PdiI	GCCGGC	2 cut(s)	744, 750
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	1712
PflMI	CCANNNNNTGG	1 cut(s)	466
PfoI	TCCNGGA	1 cut(s)	812
PinAI	ACCGGT	1 cut(s)	450
PleI	GAGTC	3 cut(s)	406, 964, 1346
PluTI	GGCGCC	3 cut(s)	743, 749, 755
PpsI	GAGTC	3 cut(s)	406, 964, 1346
PpuMI	RGGWCCY	1 cut(s)	1639
PscI	ACATGT	1 cut(s)	1509
PsiI	TTATAA	1 cut(s)	720
Psp124BI	GAGCTC	1 cut(s)	785
Psp5II	RGGWCCY	1 cut(s)	1639
Psp6I	CCWGG	2 cut(s)	459, 812
PspEI	GGTNACC	1 cut(s)	34
PspGI	CCWGG	2 cut(s)	459, 812
PspN4I	GGNNCC	6 cut(s)	625, 741, 747, 753, 979, 1698
PspPI	GGNCC	1 cut(s)	1639
PspPPI	RGGWCCY	1 cut(s)	1639
PsuI	RGATCY	2 cut(s)	1696, 1774
PvuII	CAGCTG	1 cut(s)	1634
RsaI	GTAC	6 cut(s)	208, 344, 563, 911, 979, 1143
RsaNI	GTAC	6 cut(s)	207, 343, 562, 910, 978, 1142
SacI	GAGCTC	1 cut(s)	785
SacII	CCGCGG	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	794
SaqAI	TTAA	3 cut(s)	29, 1128, 1383
Sau3AI	GATC	9 cut(s)	12, 870, 1378, 1462, 1696, 1774, 1877, 1912, 1952
Sau96I	GGNCC	1 cut(s)	1639
SchI	GAGTC	3 cut(s)	407, 965, 1346
ScrFI	CCNGG	4 cut(s)	317, 461, 814, 1357
SduI	GDGCHC	3 cut(s)	763, 785, 1120
SexAI	ACCWGGT	1 cut(s)	459
SfaNI	GCATC	3 cut(s)	1203, 1426, 1618
SfcI	CTRYAG	1 cut(s)	1561
SfoI	GGCGCC	3 cut(s)	741, 747, 753
Sfr303I	CCGCGG	1 cut(s)	247
SfuI	TTCGAA	1 cut(s)	503
SgrAI	CRCCGGYG	3 cut(s)	736, 742, 748
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	1639
SmlI	CTYRAG	2 cut(s)	1470, 1848
SmoI	CTYRAG	2 cut(s)	1470, 1848
SpeI	ACTAGT	1 cut(s)	1804
SspDI	GGCGCC	3 cut(s)	739, 745, 751
SspMI	CTAG	6 cut(s)	594, 948, 1583, 1722, 1805, 1875
SstI	GAGCTC	1 cut(s)	785
StyD4I	CCNGG	4 cut(s)	315, 459, 812, 1355
StyI	CCWWGG	1 cut(s)	1111
TaaI	ACNGT	2 cut(s)	100, 223
TaiI	ACGT	5 cut(s)	255, 435, 731, 1233, 1303
TaqI	TCGA	6 cut(s)	321, 503, 697, 1248, 1295, 1975
TatI	WGTACW	2 cut(s)	561, 909
TauI	GCSGC	3 cut(s)	246, 266, 395
TfiI	GAWTC	1 cut(s)	1712
Tru1I	TTAA	3 cut(s)	29, 1128, 1383
Tru9I	TTAA	3 cut(s)	29, 1128, 1383
TscAI	CASTG	3 cut(s)	792, 1600, 1966
TseFI	GTSAC	4 cut(s)	34, 248, 253, 280
TseI	GCWGC	8 cut(s)	307, 312, 438, 470, 648, 848, 989, 1631
Tsp45I	GTSAC	4 cut(s)	34, 248, 253, 280
TspDTI	ATGAA	7 cut(s)	403, 717, 1239, 1362, 1743, 1876, 1962
TspGWI	ACGGA	4 cut(s)	74, 497, 509, 1689
TspRI	CASTG	3 cut(s)	792, 1600, 1966
Van91I	CCANNNNNTGG	1 cut(s)	466
VneI	GTGCAC	1 cut(s)	1116
VpaK11BI	GGWCC	1 cut(s)	1639
XapI	RAATTY	3 cut(s)	634, 1124, 1688
XbaI	TCTAGA	2 cut(s)	1582, 1721
XceI	RCATGY	1 cut(s)	1513
XmiI	GTMKAC	3 cut(s)	69, 225, 1047
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	6 cut(s)	594, 948, 1583, 1722, 1805, 1875
ZraI	GACGTC	1 cut(s)	253
Zsp2I	ATGCAT	2 cut(s)	1419, 1533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.