MD05G1340000.v1.1

transmembrane receptor protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000283
Physical Location & Seq
Reverse (-)
46078619 .. 46079455
837 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1340000.v1.1.491

Sequence Viewer

Length: 837 bp
ATGCTGATGAAGATGTCCATGATCATTTTGTTGTTTCTCTCCATGCTTAGCTTGCTCAGTTTGATCACCAGTAATGAAACTGGCCAATTTCTAGCCATTAGCTGCCCAAATAACACAACCATTTTCACCTCCGACACAGGCTGGTACTTTCCCTCCTTCCACGAGAGCTTCCAATCCAATCTCAACAAAGTCCTCAACACCCTTACCTCTCCCGCTGCCCATGACACCGGCTTTTACAACATCACAGCGGGCTTAAATTCTACGGAAAAGGCCTACGGCCTCTTTCTCTGCCAAGGATATGTCTCTACCGACGTTTGCAAAGATTGCGTGACTGCCGCAAGCATAATGGCAGCTCAACGCTGTCCCTCCCGAATAAATGTAATTGTATGGTACGACTACTGCATGCTACGCTACTCAAACGAGTCCTTATCCACCTTGTCCGAATCGCCGATCGTCAACTGGCGGAACACGCAGAACGCAACCGAATGGAATCGGTTCAACCAGGTGCTGGGGGAGAGTATGAACGAGGTGGTCACCGAGGCTACTAATACGGCCAACAAGTTTGCAACGAAACAGGCAAATATCAGTAGGTTTCTTTCTGTGTACAGCCTCGCACAGTGCACATGGGATCTGTCTGCAGTGGATTGCAACCGGTGTTTAAAGCTTGCCGTGGCGCTATTGCCGAGCTGTTGTGAAGGAAGTGAAGGGGGACGAGTTTTGATGCCGAGCTGTAACATTAGGTTTGAAATTTATCCCTTTTACCTCCAAAACGCCACCTCAGCACCGGGGCCTGCACCGAAGGCTCTTCCTCCTCCTGCACCTAAAGGTACCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr Stress-antifung

Protein Analysis

279

Amino Acids

30.65

Weight (kDa)

6.13

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 54 - 141 1e-21 Salt stress response/antifungal
Stress-antifung PF01657 158 - 250 3.3e-11 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 827
AccB1I GGYRCC 1 cut(s) 827
AccB7I CCANNNNNTGG 1 cut(s) 508
AciI CCGC 4 cut(s) 213, 248, 336, 463
AclWI GGATC 1 cut(s) 636
AcoI YGGCCR 2 cut(s) 82, 552
AcsI RAATTY 2 cut(s) 256, 747
AfaI GTAC 4 cut(s) 146, 392, 605, 829
AfiI CCNNNNNNNGG 1 cut(s) 508
AgeI ACCGGT 1 cut(s) 651
AgsI TTSAA 2 cut(s) 499, 746
AjnI CCWGG 1 cut(s) 501
AluBI AGCT 7 cut(s) 51, 102, 168, 353, 664, 687, 729
AluI AGCT 7 cut(s) 51, 102, 168, 353, 664, 687, 729
Alw21I GWGCWC 1 cut(s) 623
Alw26I GTCTC 1 cut(s) 307
Alw44I GTGCAC 1 cut(s) 619
AlwI GGATC 1 cut(s) 636
AlwNI CAGNNNCTG 1 cut(s) 508
AoxI GGCC 5 cut(s) 82, 270, 277, 552, 788
ApaLI GTGCAC 1 cut(s) 619
ApeKI GCWGC 3 cut(s) 102, 215, 350
ApoI RAATTY 2 cut(s) 256, 747
AsiGI ACCGGT 1 cut(s) 651
Asp700I GAANNNNTTC 1 cut(s) 494
Asp718I GGTACC 1 cut(s) 827
AspLEI GCGC 1 cut(s) 676
AspS9I GGNCC 1 cut(s) 788
AsuC2I CCSGG 1 cut(s) 786
AsuHPI GGTGA 3 cut(s) 58, 118, 526
BaeGI GKGCMC 1 cut(s) 623
BalI TGGCCA 1 cut(s) 84
BanI GGYRCC 1 cut(s) 827
BauI CACGAG 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 623
BbvCI CCTCAGC 1 cut(s) 778
BbvI GCAGC 3 cut(s) 89, 202, 362
BceAI ACGGC 3 cut(s) 292, 567, 653
BciT130I CCWGG 1 cut(s) 503
BclI TGATCA 2 cut(s) 21, 63
BcnI CCSGG 1 cut(s) 786
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 636
BfoI RGCGCY 1 cut(s) 677
BisI GCNGC 4 cut(s) 103, 216, 336, 351
BlpI GCTNAGC 1 cut(s) 47
BlsI GCNGC 4 cut(s) 104, 217, 337, 352
Bme1390I CCNGG 2 cut(s) 503, 786
BmgT120I GGNCC 1 cut(s) 788
BmiI GGNNCC 2 cut(s) 789, 829
BmrFI CCNGG 2 cut(s) 503, 786
BmsI GCATC 1 cut(s) 711
Bpu10I CCTNAGC 1 cut(s) 778
Bpu1102I GCTNAGC 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 786
BsaJI CCNNGG 4 cut(s) 292, 537, 669, 785
BsaWI WCCGGW 1 cut(s) 651
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 508
Bse118I RCCGGY 2 cut(s) 227, 651
Bse1I ACTGG 3 cut(s) 69, 85, 464
BseBI CCWGG 1 cut(s) 503
BseDI CCNNGG 4 cut(s) 292, 537, 669, 785
BseLI CCNNNNNNNGG 1 cut(s) 508
BseMII CTCAG 2 cut(s) 70, 792
BseNI ACTGG 3 cut(s) 69, 85, 464
BseRI GAGGAG 1 cut(s) 801
BseSI GKGCMC 1 cut(s) 623
BseXI GCAGC 3 cut(s) 89, 202, 362
BseYI CCCAGC 1 cut(s) 508
BsgI GTGCAG 2 cut(s) 777, 801
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 5 cut(s) 84, 272, 279, 554, 790
BshNI GGYRCC 1 cut(s) 827
BshTI ACCGGT 1 cut(s) 651
BsiEI CGRYCG 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 623
BsiSI CCGG 3 cut(s) 228, 652, 785
BslFI GGGAC 2 cut(s) 348, 723
BslI CCNNNNNNNGG 1 cut(s) 508
BsmAI GTCTC 1 cut(s) 307
BsmFI GGGAC 2 cut(s) 348, 723
BsnI GGCC 5 cut(s) 84, 272, 279, 554, 790
Bsp1286I GDGCHC 1 cut(s) 623
Bsp1407I TGTACA 1 cut(s) 603
Bsp143I GATC 4 cut(s) 21, 63, 450, 628
Bsp1720I GCTNAGC 1 cut(s) 47
BspACI CCGC 4 cut(s) 213, 248, 336, 463
BspANI GGCC 5 cut(s) 84, 272, 279, 554, 790
BspCNI CTCAG 2 cut(s) 69, 791
BspLI GGNNCC 2 cut(s) 789, 829
BspMAI CTGCAG 1 cut(s) 640
BspPI GGATC 1 cut(s) 636
BspQI GCTCTTC 1 cut(s) 810
BspT107I GGYRCC 1 cut(s) 827
BsrFI RCCGGY 2 cut(s) 227, 651
BsrGI TGTACA 1 cut(s) 603
BsrI ACTGG 3 cut(s) 69, 85, 464
BssAI RCCGGY 2 cut(s) 227, 651
BssECI CCNNGG 4 cut(s) 292, 537, 669, 785
BssMI GATC 4 cut(s) 21, 63, 450, 628
BssSI CACGAG 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 292
Bst2BI CACGAG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 1 cut(s) 618
Bst6I CTCTTC 1 cut(s) 810
BstAPI GCANNNNNTGC 1 cut(s) 324
BstAUI TGTACA 1 cut(s) 603
BstC8I GCNNGC 6 cut(s) 53, 250, 340, 404, 666, 792
BstDEI CTNAG 3 cut(s) 47, 56, 778
BstDSI CCRYGG 1 cut(s) 669
BstEII GGTNACC 1 cut(s) 532
BstH2I RGCGCY 1 cut(s) 677
BstHHI GCGC 1 cut(s) 676
BstKTI GATC 4 cut(s) 24, 66, 453, 631
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 4 cut(s) 21, 63, 450, 628
BstMCI CGRYCG 1 cut(s) 453
BstMWI GCNNNNNNNGC 6 cut(s) 52, 324, 408, 469, 779, 800
BstNI CCWGG 1 cut(s) 503
BstNSI RCATGY 1 cut(s) 406
BstPI GGTNACC 1 cut(s) 532
BstSCI CCNGG 2 cut(s) 501, 784
BstSFI CTRYAG 1 cut(s) 636
BstSLI GKGCMC 1 cut(s) 623
BstV1I GCAGC 3 cut(s) 89, 202, 362
BstX2I RGATCY 1 cut(s) 628
BstYI RGATCY 1 cut(s) 628
BsuRI GGCC 5 cut(s) 84, 272, 279, 554, 790
BtgI CCRYGG 1 cut(s) 669
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 2 cut(s) 623, 645
Cac8I GCNNGC 6 cut(s) 53, 250, 340, 404, 666, 792
CaiI CAGNNNCTG 1 cut(s) 508
CfoI GCGC 1 cut(s) 676
Cfr10I RCCGGY 2 cut(s) 227, 651
Cfr13I GGNCC 1 cut(s) 788
CsiI ACCWGGT 1 cut(s) 501
Csp6I GTAC 4 cut(s) 145, 391, 604, 828
CspAI ACCGGT 1 cut(s) 651
CviAII CATG 5 cut(s) 19, 43, 221, 403, 624
CviQI GTAC 4 cut(s) 145, 391, 604, 828
DdeI CTNAG 3 cut(s) 47, 56, 778
DpnI GATC 4 cut(s) 23, 65, 452, 630
DpnII GATC 4 cut(s) 21, 63, 450, 628
DraI TTTAAA 1 cut(s) 660
EaeI YGGCCR 2 cut(s) 82, 552
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
EciI GGCGGA 1 cut(s) 478
Eco130I CCWWGG 1 cut(s) 292
Eco147I AGGCCT 1 cut(s) 272
Eco91I GGTNACC 1 cut(s) 532
EcoO109I RGGNCCY 1 cut(s) 788
EcoO65I GGTNACC 1 cut(s) 532
EcoRII CCWGG 1 cut(s) 501
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 5 cut(s) 22, 46, 224, 406, 627
FaiI YATR 9 cut(s) 20, 44, 222, 300, 344, 388, 404, 521, 625
FaqI GGGAC 2 cut(s) 348, 723
FatI CATG 5 cut(s) 18, 42, 220, 402, 623
FauI CCCGC 2 cut(s) 220, 241
FbaI TGATCA 2 cut(s) 21, 63
Fnu4HI GCNGC 4 cut(s) 103, 216, 336, 351
Fsp4HI GCNGC 4 cut(s) 103, 216, 336, 351
FspBI CTAG 1 cut(s) 92
GlaI GCGC 1 cut(s) 675
GluI GCNGC 4 cut(s) 103, 216, 336, 351
GsaI CCCAGC 1 cut(s) 512
HaeII RGCGCY 1 cut(s) 677
HaeIII GGCC 5 cut(s) 84, 272, 279, 554, 790
HapII CCGG 3 cut(s) 228, 652, 785
HhaI GCGC 1 cut(s) 676
Hin1II CATG 5 cut(s) 22, 46, 224, 406, 627
Hin6I GCGC 1 cut(s) 674
HinP1I GCGC 1 cut(s) 674
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 3 cut(s) 422, 443, 490
HpaII CCGG 3 cut(s) 228, 652, 785
HphI GGTGA 3 cut(s) 58, 118, 526
Hpy166II GTNNAC 3 cut(s) 457, 604, 621
Hpy188I TCNGA 2 cut(s) 133, 442
Hpy188III TCNNGA 1 cut(s) 369
Hpy8I GTNNAC 3 cut(s) 457, 604, 621
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 4 cut(s) 166, 689, 698, 793
HpyCH4III ACNGT 1 cut(s) 618
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 8 cut(s) 318, 402, 566, 621, 638, 648, 794, 818
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 324, 408, 469, 779, 800
HpyF3I CTNAG 3 cut(s) 47, 56, 778
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 5 cut(s) 22, 46, 224, 406, 627
HspAI GCGC 1 cut(s) 674
KpnI GGTACC 1 cut(s) 831
Ksp22I TGATCA 2 cut(s) 21, 63
Kzo9I GATC 4 cut(s) 21, 63, 450, 628
LguI GCTCTTC 1 cut(s) 810
Lsp1109I GCAGC 3 cut(s) 89, 202, 362
LweI GCATC 1 cut(s) 711
MabI ACCWGGT 1 cut(s) 501
MaeI CTAG 1 cut(s) 92
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 3 cut(s) 328, 532, 731
MalI GATC 4 cut(s) 23, 65, 452, 630
MboI GATC 4 cut(s) 21, 63, 450, 628
MboII GAAGA 2 cut(s) 22, 797
MfeI CAATTG 1 cut(s) 832
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 1 cut(s) 623
MlsI TGGCCA 1 cut(s) 84
MluCI AATT 5 cut(s) 86, 256, 381, 747, 832
MluNI TGGCCA 1 cut(s) 84
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 156
Mox20I TGGCCA 1 cut(s) 84
MroXI GAANNNNTTC 1 cut(s) 494
MscI TGGCCA 1 cut(s) 84
MseI TTAA 2 cut(s) 254, 659
Msp20I TGGCCA 1 cut(s) 84
MspA1I CMGCKG 2 cut(s) 215, 248
MspI CCGG 3 cut(s) 228, 652, 785
MspR9I CCNGG 2 cut(s) 503, 786
MunI CAATTG 1 cut(s) 832
MvaI CCWGG 1 cut(s) 503
MwoI GCNNNNNNNGC 6 cut(s) 52, 324, 408, 469, 779, 800
NciI CCSGG 1 cut(s) 786
NdeII GATC 4 cut(s) 21, 63, 450, 628
NlaIII CATG 5 cut(s) 22, 46, 224, 406, 627
NlaIV GGNNCC 2 cut(s) 789, 829
NmeAIII GCCGAG 2 cut(s) 708, 750
NmuCI GTSAC 2 cut(s) 328, 532
NspI RCATGY 1 cut(s) 406
PaeI GCATGC 1 cut(s) 406
PceI AGGCCT 1 cut(s) 272
PciSI GCTCTTC 1 cut(s) 810
PdmI GAANNNNTTC 1 cut(s) 494
PfeI GAWTC 2 cut(s) 443, 490
PflMI CCANNNNNTGG 1 cut(s) 508
PinAI ACCGGT 1 cut(s) 651
PkrI GCNGC 4 cut(s) 104, 217, 337, 352
Ple19I CGATCG 1 cut(s) 453
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 501
PspEI GGTNACC 1 cut(s) 532
PspFI CCCAGC 1 cut(s) 508
PspGI CCWGG 1 cut(s) 501
PspN4I GGNNCC 2 cut(s) 789, 829
PspPI GGNCC 1 cut(s) 788
PstI CTGCAG 1 cut(s) 640
PstNI CAGNNNCTG 1 cut(s) 508
PsuI RGATCY 1 cut(s) 628
PvuI CGATCG 1 cut(s) 453
RsaI GTAC 4 cut(s) 146, 392, 605, 829
RsaNI GTAC 4 cut(s) 145, 391, 604, 828
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 2 cut(s) 254, 659
SatI GCNGC 4 cut(s) 103, 216, 336, 351
Sau3AI GATC 4 cut(s) 21, 63, 450, 628
Sau96I GGNCC 1 cut(s) 788
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 2 cut(s) 503, 786
SduI GDGCHC 1 cut(s) 623
SexAI ACCWGGT 1 cut(s) 501
SfaNI GCATC 1 cut(s) 711
SfcI CTRYAG 1 cut(s) 636
SphI GCATGC 1 cut(s) 406
Sse9I AATT 5 cut(s) 86, 256, 381, 747, 832
SseBI AGGCCT 1 cut(s) 272
SsiI CCGC 4 cut(s) 213, 248, 336, 463
SspMI CTAG 1 cut(s) 92
StuI AGGCCT 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 501, 784
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 1 cut(s) 618
TaiI ACGT 1 cut(s) 315
TasI AATT 5 cut(s) 86, 256, 381, 747, 832
TatI WGTACW 1 cut(s) 603
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 2 cut(s) 443, 490
Tru1I TTAA 2 cut(s) 254, 659
Tru9I TTAA 2 cut(s) 254, 659
TscAI CASTG 2 cut(s) 623, 645
TseFI GTSAC 2 cut(s) 328, 532
TseI GCWGC 3 cut(s) 102, 215, 350
Tsp45I GTSAC 2 cut(s) 328, 532
TspDTI ATGAA 3 cut(s) 23, 90, 536
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 2 cut(s) 623, 645
Van91I CCANNNNNTGG 1 cut(s) 508
VneI GTGCAC 1 cut(s) 619
XapI RAATTY 2 cut(s) 256, 747
XceI RCATGY 1 cut(s) 406
XmnI GAANNNNTTC 1 cut(s) 494
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.